Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4411

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4409 and Psyr_4410 are separated by 6 nucleotidesPsyr_4410 and Psyr_4411 are separated by 35 nucleotidesPsyr_4411 and Psyr_4412 overlap by 8 nucleotidesPsyr_4412 and Psyr_4413 are separated by 58 nucleotides Psyr_4409: Psyr_4409 - Multiple antibiotic resistance (MarC)-related protein, at 5,273,741 to 5,274,337 _4409 Psyr_4410: Psyr_4410 - conserved hypothetical protein, at 5,274,344 to 5,274,979 _4410 Psyr_4411: Psyr_4411 - conserved hypothetical protein, at 5,275,015 to 5,275,650 _4411 Psyr_4412: Psyr_4412 - conserved hypothetical protein, at 5,275,643 to 5,276,341 _4412 Psyr_4413: Psyr_4413 - conserved hypothetical protein, at 5,276,400 to 5,277,215 _4413 Position (kb) 5275 5276Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5274.037 kb on + strand, within Psyr_4409at 5274.167 kb on - strand, within Psyr_4409at 5274.203 kb on + strand, within Psyr_4409at 5274.204 kb on - strand, within Psyr_4409at 5274.204 kb on - strand, within Psyr_4409at 5274.349 kb on + strandat 5274.349 kb on + strandat 5274.349 kb on + strandat 5274.349 kb on + strandat 5274.349 kb on + strandat 5274.350 kb on - strandat 5274.350 kb on - strandat 5274.350 kb on - strandat 5274.350 kb on - strandat 5274.390 kb on + strandat 5274.420 kb on + strand, within Psyr_4410at 5274.421 kb on - strand, within Psyr_4410at 5274.421 kb on - strand, within Psyr_4410at 5274.421 kb on - strand, within Psyr_4410at 5274.428 kb on - strand, within Psyr_4410at 5274.441 kb on + strand, within Psyr_4410at 5274.442 kb on - strand, within Psyr_4410at 5274.442 kb on - strand, within Psyr_4410at 5274.489 kb on + strand, within Psyr_4410at 5274.489 kb on + strand, within Psyr_4410at 5274.546 kb on + strand, within Psyr_4410at 5274.546 kb on + strand, within Psyr_4410at 5274.546 kb on + strand, within Psyr_4410at 5274.546 kb on + strand, within Psyr_4410at 5274.547 kb on - strand, within Psyr_4410at 5274.547 kb on - strand, within Psyr_4410at 5274.609 kb on + strand, within Psyr_4410at 5274.609 kb on + strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.773 kb on + strand, within Psyr_4410at 5274.773 kb on + strand, within Psyr_4410at 5274.773 kb on + strand, within Psyr_4410at 5274.773 kb on + strand, within Psyr_4410at 5274.773 kb on + strand, within Psyr_4410at 5274.774 kb on - strand, within Psyr_4410at 5274.774 kb on - strand, within Psyr_4410at 5274.774 kb on - strand, within Psyr_4410at 5274.774 kb on - strand, within Psyr_4410at 5274.776 kb on - strand, within Psyr_4410at 5274.801 kb on + strand, within Psyr_4410at 5274.801 kb on + strand, within Psyr_4410at 5274.802 kb on - strand, within Psyr_4410at 5274.804 kb on + strand, within Psyr_4410at 5274.804 kb on + strand, within Psyr_4410at 5274.804 kb on + strand, within Psyr_4410at 5274.804 kb on + strand, within Psyr_4410at 5274.804 kb on + strand, within Psyr_4410at 5274.805 kb on - strand, within Psyr_4410at 5274.805 kb on - strand, within Psyr_4410at 5274.940 kb on + strandat 5274.951 kb on + strandat 5274.952 kb on - strandat 5274.952 kb on - strandat 5275.017 kb on - strandat 5275.113 kb on + strand, within Psyr_4411at 5275.114 kb on - strand, within Psyr_4411at 5275.181 kb on - strand, within Psyr_4411at 5275.217 kb on - strand, within Psyr_4411at 5275.247 kb on - strand, within Psyr_4411at 5275.278 kb on + strand, within Psyr_4411at 5275.278 kb on + strand, within Psyr_4411at 5275.278 kb on + strand, within Psyr_4411at 5275.279 kb on - strand, within Psyr_4411at 5275.322 kb on - strand, within Psyr_4411at 5275.344 kb on - strand, within Psyr_4411at 5275.345 kb on + strand, within Psyr_4411at 5275.345 kb on + strand, within Psyr_4411at 5275.345 kb on + strand, within Psyr_4411at 5275.345 kb on + strand, within Psyr_4411at 5275.345 kb on + strand, within Psyr_4411at 5275.345 kb on + strand, within Psyr_4411at 5275.345 kb on + strand, within Psyr_4411at 5275.345 kb on + strand, within Psyr_4411at 5275.345 kb on + strand, within Psyr_4411at 5275.345 kb on + strand, within Psyr_4411at 5275.346 kb on - strand, within Psyr_4411at 5275.346 kb on - strand, within Psyr_4411at 5275.346 kb on - strand, within Psyr_4411at 5275.346 kb on - strand, within Psyr_4411at 5275.346 kb on - strand, within Psyr_4411at 5275.346 kb on - strand, within Psyr_4411at 5275.346 kb on - strand, within Psyr_4411at 5275.346 kb on - strand, within Psyr_4411at 5275.565 kb on - strand, within Psyr_4411at 5275.565 kb on - strand, within Psyr_4411at 5275.731 kb on + strand, within Psyr_4412at 5275.732 kb on - strand, within Psyr_4412at 5275.732 kb on - strand, within Psyr_4412at 5275.782 kb on + strand, within Psyr_4412at 5275.782 kb on + strand, within Psyr_4412at 5275.782 kb on + strand, within Psyr_4412at 5275.786 kb on + strand, within Psyr_4412at 5275.786 kb on + strand, within Psyr_4412at 5275.786 kb on + strand, within Psyr_4412at 5275.787 kb on - strand, within Psyr_4412at 5275.787 kb on - strand, within Psyr_4412at 5275.787 kb on - strand, within Psyr_4412at 5275.787 kb on - strand, within Psyr_4412at 5275.787 kb on - strand, within Psyr_4412at 5275.947 kb on - strand, within Psyr_4412at 5275.947 kb on - strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.373 kb on + strandat 5276.380 kb on + strandat 5276.380 kb on + strandat 5276.380 kb on + strandat 5276.380 kb on + strandat 5276.380 kb on + strandat 5276.380 kb on + strandat 5276.381 kb on - strandat 5276.381 kb on - strandat 5276.381 kb on - strandat 5276.476 kb on + strandat 5276.477 kb on - strandat 5276.477 kb on - strandat 5276.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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5,274,037 + Psyr_4409 0.50 -3.0
5,274,167 - Psyr_4409 0.71 +1.1
5,274,203 + Psyr_4409 0.77 -0.7
5,274,204 - Psyr_4409 0.78 +1.4
5,274,204 - Psyr_4409 0.78 -0.8
5,274,349 + +0.2
5,274,349 + -1.1
5,274,349 + -1.0
5,274,349 + +0.7
5,274,349 + +1.0
5,274,350 - -1.2
5,274,350 - +0.6
5,274,350 - -2.6
5,274,350 - -0.5
5,274,390 + -1.6
5,274,420 + Psyr_4410 0.12 -1.4
5,274,421 - Psyr_4410 0.12 +0.3
5,274,421 - Psyr_4410 0.12 -0.5
5,274,421 - Psyr_4410 0.12 -1.0
5,274,428 - Psyr_4410 0.13 -0.4
5,274,441 + Psyr_4410 0.15 -0.8
5,274,442 - Psyr_4410 0.15 +0.2
5,274,442 - Psyr_4410 0.15 +0.7
5,274,489 + Psyr_4410 0.23 +0.8
5,274,489 + Psyr_4410 0.23 +0.5
5,274,546 + Psyr_4410 0.32 +2.4
5,274,546 + Psyr_4410 0.32 -0.7
5,274,546 + Psyr_4410 0.32 -0.6
5,274,546 + Psyr_4410 0.32 -0.2
5,274,547 - Psyr_4410 0.32 -0.5
5,274,547 - Psyr_4410 0.32 -0.8
5,274,609 + Psyr_4410 0.42 +0.6
5,274,609 + Psyr_4410 0.42 +0.2
5,274,610 - Psyr_4410 0.42 +1.6
5,274,610 - Psyr_4410 0.42 +0.6
5,274,610 - Psyr_4410 0.42 +1.5
5,274,610 - Psyr_4410 0.42 +1.3
5,274,610 - Psyr_4410 0.42 -0.6
5,274,610 - Psyr_4410 0.42 +0.1
5,274,773 + Psyr_4410 0.67 +1.3
5,274,773 + Psyr_4410 0.67 +0.6
5,274,773 + Psyr_4410 0.67 -0.0
5,274,773 + Psyr_4410 0.67 -0.7
5,274,773 + Psyr_4410 0.67 +0.3
5,274,774 - Psyr_4410 0.68 +0.7
5,274,774 - Psyr_4410 0.68 +0.3
5,274,774 - Psyr_4410 0.68 -0.2
5,274,774 - Psyr_4410 0.68 -0.4
5,274,776 - Psyr_4410 0.68 -0.1
5,274,801 + Psyr_4410 0.72 -0.9
5,274,801 + Psyr_4410 0.72 +0.6
5,274,802 - Psyr_4410 0.72 +0.6
5,274,804 + Psyr_4410 0.72 +0.2
5,274,804 + Psyr_4410 0.72 -1.9
5,274,804 + Psyr_4410 0.72 +0.8
5,274,804 + Psyr_4410 0.72 -1.7
5,274,804 + Psyr_4410 0.72 -0.4
5,274,805 - Psyr_4410 0.72 -0.7
5,274,805 - Psyr_4410 0.72 -0.2
5,274,940 + -1.4
5,274,951 + -0.1
5,274,952 - -0.3
5,274,952 - +1.3
5,275,017 - -0.5
5,275,113 + Psyr_4411 0.15 -3.5
5,275,114 - Psyr_4411 0.16 +1.3
5,275,181 - Psyr_4411 0.26 +1.6
5,275,217 - Psyr_4411 0.32 -0.2
5,275,247 - Psyr_4411 0.36 +1.8
5,275,278 + Psyr_4411 0.41 -0.8
5,275,278 + Psyr_4411 0.41 -0.3
5,275,278 + Psyr_4411 0.41 -1.0
5,275,279 - Psyr_4411 0.42 -3.3
5,275,322 - Psyr_4411 0.48 +0.1
5,275,344 - Psyr_4411 0.52 -0.2
5,275,345 + Psyr_4411 0.52 +0.8
5,275,345 + Psyr_4411 0.52 -0.5
5,275,345 + Psyr_4411 0.52 -1.8
5,275,345 + Psyr_4411 0.52 +1.4
5,275,345 + Psyr_4411 0.52 +0.5
5,275,345 + Psyr_4411 0.52 +0.9
5,275,345 + Psyr_4411 0.52 +1.0
5,275,345 + Psyr_4411 0.52 -0.3
5,275,345 + Psyr_4411 0.52 +3.0
5,275,345 + Psyr_4411 0.52 +0.7
5,275,346 - Psyr_4411 0.52 -0.8
5,275,346 - Psyr_4411 0.52 +0.2
5,275,346 - Psyr_4411 0.52 -2.7
5,275,346 - Psyr_4411 0.52 -0.4
5,275,346 - Psyr_4411 0.52 +0.4
5,275,346 - Psyr_4411 0.52 +0.5
5,275,346 - Psyr_4411 0.52 +1.0
5,275,346 - Psyr_4411 0.52 +0.3
5,275,565 - Psyr_4411 0.86 +4.4
5,275,565 - Psyr_4411 0.86 +0.9
5,275,731 + Psyr_4412 0.13 +0.0
5,275,732 - Psyr_4412 0.13 +0.0
5,275,732 - Psyr_4412 0.13 +1.0
5,275,782 + Psyr_4412 0.20 -0.4
5,275,782 + Psyr_4412 0.20 -2.1
5,275,782 + Psyr_4412 0.20 -1.8
5,275,786 + Psyr_4412 0.20 -2.5
5,275,786 + Psyr_4412 0.20 +2.0
5,275,786 + Psyr_4412 0.20 -1.4
5,275,787 - Psyr_4412 0.21 -1.7
5,275,787 - Psyr_4412 0.21 -0.7
5,275,787 - Psyr_4412 0.21 +0.8
5,275,787 - Psyr_4412 0.21 +0.8
5,275,787 - Psyr_4412 0.21 -0.2
5,275,947 - Psyr_4412 0.43 -2.8
5,275,947 - Psyr_4412 0.43 +0.9
5,276,235 + Psyr_4412 0.85 -2.7
5,276,235 + Psyr_4412 0.85 +1.7
5,276,235 + Psyr_4412 0.85 -2.5
5,276,235 + Psyr_4412 0.85 -1.3
5,276,235 + Psyr_4412 0.85 +0.3
5,276,235 + Psyr_4412 0.85 -1.3
5,276,235 + Psyr_4412 0.85 -4.0
5,276,235 + Psyr_4412 0.85 -2.6
5,276,235 + Psyr_4412 0.85 -2.9
5,276,236 - Psyr_4412 0.85 +0.1
5,276,236 - Psyr_4412 0.85 -0.1
5,276,236 - Psyr_4412 0.85 -1.4
5,276,236 - Psyr_4412 0.85 +1.2
5,276,236 - Psyr_4412 0.85 +0.9
5,276,236 - Psyr_4412 0.85 +0.8
5,276,236 - Psyr_4412 0.85 +1.1
5,276,236 - Psyr_4412 0.85 +1.6
5,276,373 + +0.5
5,276,380 + -2.9
5,276,380 + +0.2
5,276,380 + -0.8
5,276,380 + +0.3
5,276,380 + +0.4
5,276,380 + +0.1
5,276,381 - +1.2
5,276,381 - +0.5
5,276,381 - +0.8
5,276,476 + +0.5
5,276,477 - -1.7
5,276,477 - +2.5
5,276,477 - -1.0

Or see this region's nucleotide sequence