Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4347 and Psyr_4348 are separated by 5 nucleotides Psyr_4348 and Psyr_4349 are separated by 28 nucleotides Psyr_4349 and Psyr_4350 are separated by 66 nucleotides Psyr_4350 and Psyr_4351 are separated by 120 nucleotides
Psyr_4347: Psyr_4347 - Protein of unknown function UPF0054, at 5,200,818 to 5,201,318
_4347
Psyr_4348: Psyr_4348 - CBS:Transporter-associated region, at 5,201,324 to 5,202,166
_4348
Psyr_4349: Psyr_4349 - Apolipoprotein N-acyltransferase, at 5,202,195 to 5,203,715
_4349
Psyr_4350: Psyr_4350 - Protein of unknown function DUF218, at 5,203,782 to 5,204,552
_4350
Psyr_4351: Psyr_4351 - conserved domain protein, at 5,204,673 to 5,205,014
_4351
Position (kb) 5202
5203
5204 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5201.915 kb on + strand, within Psyr_4348 at 5201.915 kb on + strand, within Psyr_4348 at 5201.915 kb on + strand, within Psyr_4348 at 5202.192 kb on + strand at 5203.810 kb on + strand at 5204.015 kb on + strand, within Psyr_4350 at 5204.015 kb on + strand, within Psyr_4350 at 5204.015 kb on + strand, within Psyr_4350 at 5204.373 kb on - strand, within Psyr_4350 at 5204.581 kb on + strand at 5204.581 kb on + strand at 5204.581 kb on + strand at 5204.630 kb on - strand at 5204.674 kb on + strand at 5204.674 kb on + strand at 5204.675 kb on - strand at 5204.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 5,201,915 + Psyr_4348 0.70 -1.8 5,201,915 + Psyr_4348 0.70 +1.1 5,201,915 + Psyr_4348 0.70 +0.9 5,202,192 + -0.6 5,203,810 + +0.7 5,204,015 + Psyr_4350 0.30 -0.2 5,204,015 + Psyr_4350 0.30 -0.8 5,204,015 + Psyr_4350 0.30 -2.3 5,204,373 - Psyr_4350 0.77 +1.2 5,204,581 + -1.2 5,204,581 + -3.0 5,204,581 + -0.1 5,204,630 - -0.9 5,204,674 + +0.6 5,204,674 + +0.8 5,204,675 - -0.6 5,204,694 + +1.0
Or see this region's nucleotide sequence