Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4348

Experiment: epiphytic; Green bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4346 and Psyr_4347 overlap by 8 nucleotidesPsyr_4347 and Psyr_4348 are separated by 5 nucleotidesPsyr_4348 and Psyr_4349 are separated by 28 nucleotides Psyr_4346: Psyr_4346 - PhoH-like protein, at 5,199,803 to 5,200,825 _4346 Psyr_4347: Psyr_4347 - Protein of unknown function UPF0054, at 5,200,818 to 5,201,318 _4347 Psyr_4348: Psyr_4348 - CBS:Transporter-associated region, at 5,201,324 to 5,202,166 _4348 Psyr_4349: Psyr_4349 - Apolipoprotein N-acyltransferase, at 5,202,195 to 5,203,715 _4349 Position (kb) 5201 5202 5203Strain fitness (log2 ratio) -2 -1 0 1 2at 5200.385 kb on + strand, within Psyr_4346at 5200.385 kb on + strand, within Psyr_4346at 5200.397 kb on + strand, within Psyr_4346at 5200.418 kb on + strand, within Psyr_4346at 5200.469 kb on + strand, within Psyr_4346at 5200.469 kb on + strand, within Psyr_4346at 5200.469 kb on + strand, within Psyr_4346at 5200.469 kb on + strand, within Psyr_4346at 5200.469 kb on + strand, within Psyr_4346at 5200.469 kb on + strand, within Psyr_4346at 5200.469 kb on + strand, within Psyr_4346at 5200.489 kb on + strand, within Psyr_4346at 5200.489 kb on + strand, within Psyr_4346at 5200.725 kb on + strandat 5201.915 kb on + strand, within Psyr_4348at 5201.915 kb on + strand, within Psyr_4348at 5201.915 kb on + strand, within Psyr_4348at 5202.192 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
remove
5,200,385 + Psyr_4346 0.57 +1.7
5,200,385 + Psyr_4346 0.57 +0.8
5,200,397 + Psyr_4346 0.58 +2.2
5,200,418 + Psyr_4346 0.60 +0.7
5,200,469 + Psyr_4346 0.65 -0.2
5,200,469 + Psyr_4346 0.65 -0.7
5,200,469 + Psyr_4346 0.65 +0.9
5,200,469 + Psyr_4346 0.65 +0.1
5,200,469 + Psyr_4346 0.65 +0.0
5,200,469 + Psyr_4346 0.65 +1.4
5,200,469 + Psyr_4346 0.65 +0.5
5,200,489 + Psyr_4346 0.67 -1.9
5,200,489 + Psyr_4346 0.67 +0.5
5,200,725 + +0.9
5,201,915 + Psyr_4348 0.70 -1.8
5,201,915 + Psyr_4348 0.70 +1.1
5,201,915 + Psyr_4348 0.70 +0.9
5,202,192 + -0.6

Or see this region's nucleotide sequence