Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3983

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
4,735,508	-		Psyr_3982	0.57	+1.7
4,735,537	+		Psyr_3982	0.60	-0.2
4,735,537	+		Psyr_3982	0.60	-2.5
4,735,537	+		Psyr_3982	0.60	+1.2
4,735,562	+		Psyr_3982	0.63	-0.6
4,735,562	+		Psyr_3982	0.63	-0.1
4,735,578	-		Psyr_3982	0.65	-0.5
4,735,616	+		Psyr_3982	0.69	+0.3
4,735,616	+		Psyr_3982	0.69	+0.5
4,735,616	+		Psyr_3982	0.69	+1.1
4,735,617	-		Psyr_3982	0.69	-0.5
4,735,617	-		Psyr_3982	0.69	+1.1
4,735,617	-		Psyr_3982	0.69	+1.2
4,735,617	-		Psyr_3982	0.69	-0.1
4,735,617	-		Psyr_3982	0.69	+0.0
4,735,617	-		Psyr_3982	0.69	+0.5
4,735,679	+		Psyr_3982	0.76	+0.1
4,735,679	+		Psyr_3982	0.76	+1.6
4,735,679	+		Psyr_3982	0.76	+1.8
4,735,679	+		Psyr_3982	0.76	+0.8
4,735,679	+		Psyr_3982	0.76	+0.4
4,735,680	-		Psyr_3982	0.76	-2.0
4,735,680	-		Psyr_3982	0.76	+2.6
4,735,680	-		Psyr_3982	0.76	+0.8
4,735,680	-		Psyr_3982	0.76	-0.4
4,735,680	-		Psyr_3982	0.76	+1.3
4,735,680	-		Psyr_3982	0.76	+0.0
4,736,015	+				-0.5
4,736,055	-		Psyr_RNA61	0.11	-1.8
4,736,055	-		Psyr_RNA61	0.11	+0.7
4,736,055	-		Psyr_RNA61	0.11	+1.8
4,736,055	-		Psyr_RNA61	0.11	+0.9
4,736,059	+		Psyr_RNA61	0.16	+1.5
4,736,066	-		Psyr_RNA61	0.26	+1.0
4,736,088	+		Psyr_RNA61	0.55	-2.5
4,736,089	-		Psyr_RNA61	0.57	-0.2
4,736,182	+				+0.5
4,736,182	+				+0.8
4,736,297	-				-2.3
4,736,297	-				-0.5
4,736,304	+				-0.6
4,736,356	+				+0.2
4,736,356	+				-0.0
4,736,357	-				-0.5
4,736,411	+				-1.3
4,736,411	+				-0.9
4,736,664	-				+1.1
4,736,685	+				-2.0
4,736,686	-				+0.8
4,736,686	-				-0.5
4,736,686	-				-0.7
4,736,686	-				-0.3
4,736,830	-		Psyr_3983	0.15	+0.4
4,736,830	-		Psyr_3983	0.15	+0.1
4,736,831	+		Psyr_3983	0.15	+0.6
4,736,831	+		Psyr_3983	0.15	-0.5
4,736,831	+		Psyr_3983	0.15	-0.1
4,736,832	-		Psyr_3983	0.15	-1.2
4,736,832	-		Psyr_3983	0.15	-3.6
4,737,009	+		Psyr_3983	0.22	-2.3
4,737,009	+		Psyr_3983	0.22	-1.1
4,737,010	-		Psyr_3983	0.22	-2.2
4,737,010	-		Psyr_3983	0.22	+1.0
4,737,010	-		Psyr_3983	0.22	-0.9
4,737,310	+		Psyr_3983	0.35	+1.6
4,737,311	-		Psyr_3983	0.35	-0.9
4,737,359	+		Psyr_3983	0.37	-3.2
4,737,360	-				+0.1
4,737,444	+		Psyr_3983	0.41	-0.5
4,737,444	+		Psyr_3983	0.41	-0.9
4,737,444	+		Psyr_3983	0.41	-1.2
4,737,485	+		Psyr_3983	0.43	-0.6
4,737,544	-		Psyr_3983	0.45	-0.3
4,737,737	+		Psyr_3983	0.53	+1.2
4,737,737	+		Psyr_3983	0.53	-3.0
4,737,737	+		Psyr_3983	0.53	+0.7
4,737,737	+		Psyr_3983	0.53	+0.2
4,737,738	-		Psyr_3983	0.53	-0.0
4,737,738	-		Psyr_3983	0.53	+2.1
4,737,738	-		Psyr_3983	0.53	-0.0
4,737,750	-		Psyr_3983	0.54	+0.8
4,737,770	+		Psyr_3983	0.55	-0.8
4,737,770	+		Psyr_3983	0.55	+1.7
4,737,770	+		Psyr_3983	0.55	-0.8
4,737,771	-		Psyr_3983	0.55	-1.5
4,737,771	-		Psyr_3983	0.55	-1.0
4,737,771	-		Psyr_3983	0.55	+0.2
4,737,771	-		Psyr_3983	0.55	-1.0
4,737,771	-		Psyr_3983	0.55	+1.0
4,737,771	-		Psyr_3983	0.55	-0.3
4,737,771	-		Psyr_3983	0.55	+0.9
4,737,771	-		Psyr_3983	0.55	+0.9
4,737,883	+		Psyr_3983	0.59	+1.1
4,737,915	+		Psyr_3983	0.61	-2.5
4,737,935	-		Psyr_3983	0.62	+0.6
4,737,991	+		Psyr_3983	0.64	-1.8
4,737,991	+		Psyr_3983	0.64	-0.3
4,737,991	+		Psyr_3983	0.64	-1.4
4,737,991	+		Psyr_3983	0.64	+1.9
4,737,991	+		Psyr_3983	0.64	-0.5
4,737,992	-		Psyr_3983	0.64	+0.9
4,738,040	+		Psyr_3983	0.66	-0.6
4,738,040	+		Psyr_3983	0.66	-0.4
4,738,040	+		Psyr_3983	0.66	+1.1
4,738,040	+		Psyr_3983	0.66	-0.6
4,738,040	+		Psyr_3983	0.66	+0.2
4,738,040	+		Psyr_3983	0.66	-0.7
4,738,040	+		Psyr_3983	0.66	-0.8
4,738,040	+		Psyr_3983	0.66	+0.4
4,738,041	-		Psyr_3983	0.66	+1.3
4,738,041	-		Psyr_3983	0.66	+0.2
4,738,041	-		Psyr_3983	0.66	+2.1
4,738,041	-		Psyr_3983	0.66	+2.0
4,738,041	-		Psyr_3983	0.66	+0.6
4,738,041	-		Psyr_3983	0.66	+0.3
4,738,041	-		Psyr_3983	0.66	+1.1
4,738,079	+		Psyr_3983	0.68	+0.5
4,738,079	+		Psyr_3983	0.68	-0.6
4,738,079	+		Psyr_3983	0.68	+0.5
4,738,080	-		Psyr_3983	0.68	+1.4
4,738,080	-		Psyr_3983	0.68	+1.8
4,738,080	-		Psyr_3983	0.68	-0.4
4,738,080	-		Psyr_3983	0.68	+0.1
4,738,145	+		Psyr_3983	0.71	+0.1
4,738,145	+		Psyr_3983	0.71	-0.9
4,738,145	+		Psyr_3983	0.71	-0.3
4,738,145	+		Psyr_3983	0.71	+0.1
4,738,145	+		Psyr_3983	0.71	+1.0
4,738,149	+		Psyr_3983	0.71	-1.2
4,738,149	+		Psyr_3983	0.71	-0.5
4,738,150	-		Psyr_3983	0.71	+0.6
4,738,150	-		Psyr_3983	0.71	-0.7
4,738,150	-		Psyr_3983	0.71	+0.8
4,738,150	-		Psyr_3983	0.71	-1.3
4,738,150	-		Psyr_3983	0.71	-0.3
4,738,150	-		Psyr_3983	0.71	+0.2
4,738,150	-		Psyr_3983	0.71	+1.5
4,738,150	-		Psyr_3983	0.71	-2.6
4,738,181	+		Psyr_3983	0.72	-0.3
4,738,182	-		Psyr_3983	0.72	-1.9
4,738,229	+		Psyr_3983	0.74	+1.1
4,738,250	+		Psyr_3983	0.75	-0.0
4,738,250	+		Psyr_3983	0.75	+1.9
4,738,250	+		Psyr_3983	0.75	-1.7
4,738,251	-		Psyr_3983	0.75	-0.5
4,738,251	-		Psyr_3983	0.75	-3.3
4,738,254	+		Psyr_3983	0.75	+1.0
4,738,254	+		Psyr_3983	0.75	+1.5
4,738,254	+		Psyr_3983	0.75	+0.4
4,738,254	+		Psyr_3983	0.75	+0.7
4,738,254	+		Psyr_3983	0.75	+1.0
4,738,255	-		Psyr_3983	0.75	+0.6
4,738,255	-		Psyr_3983	0.75	+2.7
4,738,255	-		Psyr_3983	0.75	-1.4
4,738,255	-		Psyr_3983	0.75	-2.5
4,738,255	-		Psyr_3983	0.75	+0.9
4,738,255	-		Psyr_3983	0.75	+0.5
4,738,274	+		Psyr_3983	0.76	+0.5
4,738,289	+		Psyr_3983	0.77	+2.2
4,738,290	-		Psyr_3983	0.77	-0.1
4,738,290	-		Psyr_3983	0.77	-0.5
4,738,290	-		Psyr_3983	0.77	+0.4
4,738,310	+				-1.7
4,738,310	+		Psyr_3983	0.78	+0.2
4,738,310	+		Psyr_3983	0.78	-2.8
4,738,310	+		Psyr_3983	0.78	+0.5
4,738,310	+		Psyr_3983	0.78	+0.8
4,738,311	-		Psyr_3983	0.78	+0.5
4,738,311	-		Psyr_3983	0.78	-0.7
4,738,311	-		Psyr_3983	0.78	+1.5
4,738,346	+		Psyr_3983	0.79	-2.5
4,738,346	+		Psyr_3983	0.79	+1.0
4,738,346	+		Psyr_3983	0.79	+1.0
4,738,346	+		Psyr_3983	0.79	+0.5
4,738,346	+		Psyr_3983	0.79	+1.4
4,738,346	+		Psyr_3983	0.79	-2.0
4,738,347	-		Psyr_3983	0.79	-1.6
4,738,347	-		Psyr_3983	0.79	+0.3
4,738,347	-		Psyr_3983	0.79	+1.9
4,738,347	-		Psyr_3983	0.79	-0.5
4,738,347	-		Psyr_3983	0.79	-1.4
4,738,347	-		Psyr_3983	0.79	-0.1
4,738,347	-		Psyr_3983	0.79	-0.6
4,738,394	+		Psyr_3983	0.81	-0.1
4,738,394	+		Psyr_3983	0.81	+3.1
4,738,394	+		Psyr_3983	0.81	-2.6
4,738,395	-		Psyr_3983	0.81	-2.1
4,738,395	-		Psyr_3983	0.81	-1.1
4,738,406	+		Psyr_3983	0.82	-0.9
4,738,406	+		Psyr_3983	0.82	-2.7
4,738,407	-		Psyr_3983	0.82	-0.4
4,738,409	+		Psyr_3983	0.82	-0.4
4,738,409	+		Psyr_3983	0.82	+0.2
4,738,409	+		Psyr_3983	0.82	-1.5
4,738,409	+		Psyr_3983	0.82	+1.6
4,738,409	+		Psyr_3983	0.82	-1.2
4,738,410	-		Psyr_3983	0.82	-1.9
4,738,410	-		Psyr_3983	0.82	-0.4
4,738,418	+		Psyr_3983	0.82	-3.0
4,738,475	+		Psyr_3983	0.85	+0.7
4,738,475	+		Psyr_3983	0.85	-1.1
4,738,475	+		Psyr_3983	0.85	+1.4
4,738,476	-		Psyr_3983	0.85	+0.7
4,738,476	-		Psyr_3983	0.85	+1.7
4,738,490	+		Psyr_3983	0.85	-0.3
4,738,490	+		Psyr_3983	0.85	+1.2
4,738,490	+		Psyr_3983	0.85	-1.7
4,738,707	+				-0.5
4,738,707	+				+1.3
4,738,707	+				+2.2
4,738,707	+				+1.6
4,738,708	-				+2.0
4,738,712	+				+1.1
4,738,712	+				+0.4
4,738,712	+				+1.1
4,738,712	+				+0.9
4,738,712	+				-0.9
4,738,712	+				-0.1
4,738,713	-				-0.8
4,738,713	-				-0.0
4,738,713	-				-3.3
4,738,713	-				-1.7
4,738,713	-				-2.3
4,738,715	+				+0.2
4,738,715	+				-0.0
4,738,715	+				-0.0
4,738,715	+				-2.6
4,738,715	+				+2.7
4,738,715	+				-3.3
4,738,715	+				+1.5
4,738,715	+				+0.7
4,738,716	-				-0.4
4,738,716	-				+0.8
4,738,816	-				-0.5
4,738,841	+				-0.9
4,738,841	+				-0.4
4,738,841	+				+0.3
4,738,842	-				-1.5
4,738,842	-				-2.0
4,738,875	+				+1.3
4,738,875	+				+0.1
4,738,876	-				+1.0
4,738,876	-				+0.8
4,738,880	-				+0.8
4,739,077	+				+1.4
4,739,077	+				-0.6
4,739,078	-				+0.2
4,739,078	-				-0.2
4,739,106	+				-0.6
4,739,107	-				+2.4
4,739,107	-				-3.2
4,739,107	-				+0.0
4,739,107	-				-3.3
4,739,175	+				-3.5
4,739,189	+				+1.0
4,739,189	+				-0.3
4,739,295	+				-0.5
4,739,295	+				+0.4
4,739,296	-				-0.4
4,739,296	-				-0.5
4,739,296	-				+0.0
4,739,299	+				-1.2
4,739,299	+				-0.2
4,739,299	+				-1.2
4,739,299	+				-0.0
4,739,300	-				+0.7
4,739,300	-				+0.3
4,739,300	-				-1.6
4,739,300	-				+0.8
4,739,300	-				+1.5
4,739,300	-				-1.9
4,739,300	-				-2.2
4,739,300	-				-1.1
4,739,300	-				+0.7
4,739,300	-				-1.1
4,739,300	-				-1.5
4,739,300	-				+0.1
4,739,300	-				-0.5
4,739,300	-				-0.3
4,739,300	-				-1.7
4,739,303	+				-1.9
4,739,303	+				+0.1
4,739,303	+				-1.2
4,739,303	+				+0.1
4,739,303	+				-0.9
4,739,303	+				-0.3
4,739,303	+				-1.3
4,739,303	+				-0.3
4,739,303	+				+1.1
4,739,303	+				+1.6
4,739,303	+				-0.9
4,739,303	+				-2.2
4,739,303	+				-1.7
4,739,303	+				-0.6
4,739,303	+				-0.9
4,739,303	+				+0.1
4,739,303	+				+0.6
4,739,303	+				+0.4
4,739,303	+				-1.5
4,739,303	+				-1.2
4,739,303	+				+0.3
4,739,303	+				-0.3
4,739,303	+				-1.7
4,739,303	+				-1.1
4,739,303	+				+0.9
4,739,303	+				-1.3
4,739,303	+				+1.4
4,739,303	+				-1.2
4,739,303	+				+0.0
4,739,303	+				+0.4
4,739,303	+				-0.2
4,739,303	+				+0.8
4,739,304	-				+0.7
4,739,304	-				+1.0
4,739,304	-				+1.1
4,739,304	-				+0.8
4,739,304	-				+0.9
4,739,304	-				-0.3
4,739,304	-				-0.5
4,739,304	-				+0.1
4,739,304	-				+0.4
4,739,304	-				-1.0
4,739,304	-				+0.1
4,739,304	-				+0.8
4,739,304	-				-1.0
4,739,304	-				+0.4
4,739,304	-				+0.5
4,739,304	-				-0.0
4,739,304	-				-0.9
4,739,304	-				+1.0
4,739,304	-				-1.4
4,739,304	-				-1.2
4,739,304	-				+0.0
4,739,304	-				-2.5
4,739,304	-				+0.5
4,739,304	-				+0.1
4,739,304	-				-3.0
4,739,304	-				-0.1
4,739,304	-				-1.7
4,739,304	-				-0.4
4,739,307	+				-1.5
4,739,307	+				+0.4
4,739,307	+				+0.8
4,739,307	+				-1.7
4,739,307	+				+1.0
4,739,307	+				-0.9
4,739,307	+				+0.1
4,739,308	-				-2.1
4,739,308	-				+0.2
4,739,308	-				+0.9
4,739,308	-				-0.0
4,739,308	-				+0.1
4,739,308	-				+0.9
4,739,308	-				+0.7
4,739,308	-				+0.3
4,739,308	-				-0.9
4,739,321	+				+0.1
4,739,322	-				+1.0
4,739,322	-				-0.8
4,739,322	-				+0.4
4,739,322	-				-3.5
4,739,334	+				-1.0
4,739,421	+				-0.2
4,739,421	+				+0.1
4,739,421	+				-1.9
4,739,421	+				-0.2
4,739,421	+				-1.9
4,739,421	+				-3.8
4,739,421	+				+1.1
4,739,421	+				-1.3
4,739,422	-				+0.1
4,739,422	-				+0.6
4,739,422	-				-0.6
4,739,422	-				-1.7
4,739,491	+				+2.8
4,739,491	+				+0.9
4,739,491	+				+0.4
4,739,491	+				-1.6
4,739,491	+				+0.6
4,739,491	+				+1.7
4,739,491	+				+0.7
4,739,492	-				+0.4
4,739,492	-				-1.9
4,739,732	+				-0.3
4,739,732	+				+0.4
4,739,732	+				+0.5
4,739,732	+				-0.6
4,739,733	-				+0.5
4,739,733	-				+0.8
4,739,733	-				-3.5
4,739,775	+				+1.7
4,739,830	+				-3.0