Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3638

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
4,319,128	-				-3.3
4,319,128	-				-1.7
4,319,136	+				-2.1
4,319,136	+				-0.2
4,319,136	+				-3.4
4,319,136	+				-2.7
4,319,136	+				+1.4
4,319,136	+				-1.8
4,319,137	-				-0.9
4,319,137	-				+0.4
4,319,137	-				+1.8
4,319,137	-				+3.5
4,319,137	-				+0.2
4,319,138	+				+0.6
4,319,138	+				-1.0
4,319,138	+				-0.9
4,319,138	+				-0.0
4,319,138	+				-1.2
4,319,138	+				-2.1
4,319,138	+				-1.5
4,319,138	+				-2.0
4,319,138	+				-3.4
4,319,138	+				+2.5
4,319,138	+				-1.4
4,319,138	+				-1.7
4,319,139	-				-3.3
4,319,139	-				-1.4
4,319,139	-				-0.3
4,319,139	-				+1.7
4,319,139	-				-2.4
4,319,139	-				-3.8
4,319,139	-				+0.6
4,319,139	-				-1.4
4,319,139	-				-0.7
4,319,139	-				+0.0
4,319,139	-				+2.1
4,319,139	-				-1.3
4,319,139	-				+1.1
4,319,139	-				-1.1
4,319,139	-				+0.9
4,319,139	-				-3.3
4,319,139	-				-0.5
4,319,139	-				+0.7
4,319,139	-				-2.8
4,319,139	-				-2.0
4,319,139	-				-0.4
4,319,169	+		Psyr_3637	0.10	+0.2
4,319,219	+		Psyr_3637	0.15	-4.2
4,319,302	-		Psyr_3637	0.23	+1.8
4,319,373	+		Psyr_3637	0.30	-1.2
4,319,457	+		Psyr_3637	0.39	-0.9
4,319,457	+		Psyr_3637	0.39	-0.5
4,319,457	+		Psyr_3637	0.39	-2.0
4,319,457	+		Psyr_3637	0.39	-2.4
4,319,458	-		Psyr_3637	0.39	-2.4
4,319,458	-		Psyr_3637	0.39	-1.1
4,319,458	-		Psyr_3637	0.39	-1.2
4,319,517	+		Psyr_3637	0.45	-1.3
4,319,517	+		Psyr_3637	0.45	+0.6
4,319,518	-		Psyr_3637	0.45	-0.7
4,319,518	-		Psyr_3637	0.45	-0.7
4,319,518	-		Psyr_3637	0.45	-0.1
4,319,518	-		Psyr_3637	0.45	-2.5
4,319,554	+		Psyr_3637	0.48	-2.0
4,319,554	+		Psyr_3637	0.48	-4.0
4,319,554	+		Psyr_3637	0.48	-0.2
4,319,554	+		Psyr_3637	0.48	-1.1
4,319,555	-		Psyr_3637	0.48	-2.7
4,319,555	-		Psyr_3637	0.48	-3.5
4,319,558	+		Psyr_3637	0.49	-1.8
4,319,558	+		Psyr_3637	0.49	-2.0
4,319,558	+		Psyr_3637	0.49	-0.8
4,319,558	+		Psyr_3637	0.49	-2.5
4,319,558	+		Psyr_3637	0.49	+0.2
4,319,558	+		Psyr_3637	0.49	-2.9
4,319,559	-		Psyr_3637	0.49	-2.3
4,319,559	-		Psyr_3637	0.49	-0.8
4,319,559	-		Psyr_3637	0.49	-3.8
4,319,559	-		Psyr_3637	0.49	+0.9
4,319,559	-		Psyr_3637	0.49	-1.1
4,319,577	+		Psyr_3637	0.50	-2.9
4,319,577	+		Psyr_3637	0.50	-1.1
4,319,577	+		Psyr_3637	0.50	-1.1
4,319,577	+		Psyr_3637	0.50	+0.1
4,319,578	-		Psyr_3637	0.51	+0.0
4,319,578	-		Psyr_3637	0.51	-3.2
4,319,610	+		Psyr_3637	0.54	-0.3
4,319,611	-		Psyr_3637	0.54	-1.1
4,319,629	+		Psyr_3637	0.56	-3.1
4,319,629	+		Psyr_3637	0.56	+2.0
4,319,629	+		Psyr_3637	0.56	-2.1
4,319,630	-		Psyr_3637	0.56	-1.1
4,319,630	-		Psyr_3637	0.56	-3.0
4,319,630	-		Psyr_3637	0.56	-3.4
4,319,630	-		Psyr_3637	0.56	+0.7
4,319,630	-		Psyr_3637	0.56	+1.1
4,319,631	+		Psyr_3637	0.56	-0.3
4,319,631	+		Psyr_3637	0.56	-0.8
4,319,631	+		Psyr_3637	0.56	-0.5
4,319,631	+		Psyr_3637	0.56	-0.2
4,319,631	+		Psyr_3637	0.56	+0.8
4,319,631	+		Psyr_3637	0.56	-2.8
4,319,631	+		Psyr_3637	0.56	-3.2
4,319,631	+		Psyr_3637	0.56	-4.2
4,319,631	+		Psyr_3637	0.56	+0.6
4,319,631	+		Psyr_3637	0.56	-1.2
4,319,631	+		Psyr_3637	0.56	+0.0
4,319,631	+		Psyr_3637	0.56	-3.0
4,319,632	-		Psyr_3637	0.56	-3.0
4,319,632	-		Psyr_3637	0.56	-0.6
4,319,632	-		Psyr_3637	0.56	-0.1
4,319,632	-		Psyr_3637	0.56	-2.3
4,319,632	-		Psyr_3637	0.56	-1.4
4,319,632	-		Psyr_3637	0.56	+0.2
4,319,632	-		Psyr_3637	0.56	-3.2
4,319,632	-		Psyr_3637	0.56	-0.4
4,319,632	-		Psyr_3637	0.56	-1.3
4,319,632	-		Psyr_3637	0.56	-1.1
4,319,653	+		Psyr_3637	0.58	-0.2
4,319,653	+		Psyr_3637	0.58	+0.6
4,319,654	-		Psyr_3637	0.58	-1.9
4,319,654	-		Psyr_3637	0.58	-2.8
4,319,654	-		Psyr_3637	0.58	-1.1
4,319,654	-		Psyr_3637	0.58	-1.1
4,320,007	+				-1.1
4,320,007	+				-0.8
4,320,007	+				-1.4
4,320,007	+				-3.3
4,320,008	-				+0.9
4,320,008	-				-0.3
4,320,008	-				-0.5
4,320,095	+				+0.5
4,320,095	+				-0.7
4,320,096	-				-2.1
4,320,099	-				+0.6
4,320,159	+				-1.7
4,320,519	-		Psyr_3638	0.46	-2.3
4,320,666	+		Psyr_3638	0.61	-1.9
4,320,666	+		Psyr_3638	0.61	+0.2
4,320,666	+		Psyr_3638	0.61	-0.3
4,320,666	+		Psyr_3638	0.61	+1.2
4,320,666	+		Psyr_3638	0.61	-1.1
4,320,667	-		Psyr_3638	0.61	-0.7
4,320,696	+		Psyr_3638	0.64	-2.4
4,320,773	+		Psyr_3638	0.72	+0.9
4,320,929	+		Psyr_3638	0.88	-0.6
4,320,929	+		Psyr_3638	0.88	-2.1
4,320,929	+		Psyr_3638	0.88	-0.7
4,320,929	+		Psyr_3638	0.88	+0.0
4,320,930	-		Psyr_3638	0.88	-0.4
4,320,930	-		Psyr_3638	0.88	-2.7
4,321,021	+				-1.4
4,321,079	+				-2.3
4,321,079	+				-2.8
4,321,080	-				-0.2
4,321,090	+				-0.9
4,321,112	+				+0.7
4,321,129	-				-0.2
4,321,131	-				+1.8
4,321,175	+				+1.3
4,321,230	+				+0.9
4,321,230	+				-0.8
4,321,230	+				-1.8
4,321,230	+				+0.2
4,321,231	-				+2.5
4,321,231	-				-0.6
4,321,231	-				+0.6
4,321,231	-				+0.9
4,321,231	-				+1.7
4,321,290	+				-1.7
4,321,291	-				-0.8
4,321,295	-				-0.8
4,321,307	-				+0.3
4,321,451	+		Psyr_3639	0.14	-1.3
4,321,451	+		Psyr_3639	0.14	-1.9
4,321,452	-		Psyr_3639	0.14	+0.7
4,321,452	-		Psyr_3639	0.14	-0.1
4,321,452	-		Psyr_3639	0.14	+0.2
4,321,478	+		Psyr_3639	0.16	+0.4
4,321,478	+		Psyr_3639	0.16	+0.1
4,321,478	+		Psyr_3639	0.16	+1.9
4,321,478	+		Psyr_3639	0.16	+0.3
4,321,478	+		Psyr_3639	0.16	-0.1
4,321,478	+		Psyr_3639	0.16	+1.4
4,321,478	+		Psyr_3639	0.16	-0.5
4,321,478	+		Psyr_3639	0.16	-2.4
4,321,479	-		Psyr_3639	0.16	-0.4
4,321,479	-		Psyr_3639	0.16	+1.5
4,321,479	-		Psyr_3639	0.16	+1.2
4,321,479	-		Psyr_3639	0.16	+0.4
4,321,479	-		Psyr_3639	0.16	-2.4
4,321,479	-		Psyr_3639	0.16	+0.2
4,321,479	-		Psyr_3639	0.16	-0.2
4,321,482	+		Psyr_3639	0.16	-0.7
4,321,482	+		Psyr_3639	0.16	+2.9
4,321,483	-		Psyr_3639	0.16	-2.5
4,321,550	+		Psyr_3639	0.21	-1.4
4,321,551	-		Psyr_3639	0.21	-0.1
4,321,551	-		Psyr_3639	0.21	+0.6
4,321,551	-		Psyr_3639	0.21	-0.2
4,321,558	+		Psyr_3639	0.21	-0.1
4,321,558	+		Psyr_3639	0.21	+1.3
4,321,558	+		Psyr_3639	0.21	-0.5
4,321,558	+		Psyr_3639	0.21	-0.3
4,321,559	-		Psyr_3639	0.21	+0.1
4,321,559	-		Psyr_3639	0.21	+0.9
4,321,559	-		Psyr_3639	0.21	-0.5
4,321,559	-		Psyr_3639	0.21	-0.3
4,321,559	-		Psyr_3639	0.21	+1.4
4,321,590	+		Psyr_3639	0.24	+0.8
4,321,590	+		Psyr_3639	0.24	-0.2
4,321,590	+		Psyr_3639	0.24	-0.4
4,321,591	-		Psyr_3639	0.24	-1.4
4,321,618	+		Psyr_3639	0.26	+0.7
4,321,618	+		Psyr_3639	0.26	+0.6
4,321,618	+		Psyr_3639	0.26	-0.4
4,321,618	+		Psyr_3639	0.26	+1.3
4,321,619	-		Psyr_3639	0.26	+0.1
4,321,619	-		Psyr_3639	0.26	+0.3
4,321,619	-		Psyr_3639	0.26	+0.4
4,321,665	+		Psyr_3639	0.29	-2.1
4,321,665	+		Psyr_3639	0.29	-0.4
4,321,665	+		Psyr_3639	0.29	+1.9
4,321,666	-		Psyr_3639	0.29	-0.9
4,321,666	-		Psyr_3639	0.29	+2.3
4,321,666	-		Psyr_3639	0.29	-0.5
4,321,666	-		Psyr_3639	0.29	-2.0
4,321,666	-		Psyr_3639	0.29	+0.2
4,321,666	-		Psyr_3639	0.29	-0.9
4,321,697	-		Psyr_3639	0.31	-0.8
4,321,697	-		Psyr_3639	0.31	-1.3
4,321,773	+		Psyr_3639	0.36	-1.1
4,321,774	-		Psyr_3639	0.36	+0.6
4,321,791	+		Psyr_3639	0.37	+0.7
4,321,792	-		Psyr_3639	0.38	+0.3
4,321,792	-		Psyr_3639	0.38	+2.0
4,321,862	+		Psyr_3639	0.42	-1.4
4,321,862	+		Psyr_3639	0.42	+1.3
4,321,863	-		Psyr_3639	0.42	+0.9
4,321,928	+		Psyr_3639	0.47	+0.5
4,321,928	+		Psyr_3639	0.47	-2.8
4,321,928	+		Psyr_3639	0.47	+0.3
4,321,928	+		Psyr_3639	0.47	+1.0
4,321,928	+		Psyr_3639	0.47	-0.5
4,321,928	+		Psyr_3639	0.47	-1.9
4,321,928	+		Psyr_3639	0.47	-3.3
4,321,928	+		Psyr_3639	0.47	-2.0
4,321,928	+		Psyr_3639	0.47	+0.8
4,321,929	-		Psyr_3639	0.47	+0.4
4,321,929	-		Psyr_3639	0.47	+0.2
4,321,929	-		Psyr_3639	0.47	-0.8
4,321,945	-		Psyr_3639	0.48	-0.7
4,322,018	+		Psyr_3639	0.53	-0.4
4,322,018	+		Psyr_3639	0.53	-0.9
4,322,018	+		Psyr_3639	0.53	+0.7
4,322,019	-		Psyr_3639	0.53	-1.1
4,322,019	-		Psyr_3639	0.53	+0.3
4,322,019	-		Psyr_3639	0.53	-0.5
4,322,019	-		Psyr_3639	0.53	-1.0
4,322,019	-		Psyr_3639	0.53	-0.0