Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2603 and Psyr_2604 are separated by 245 nucleotides Psyr_2604 and Psyr_2605 are separated by 96 nucleotides
Psyr_2603: Psyr_2603 - Secretion protein HlyD, at 3,057,159 to 3,058,328
_2603
Psyr_2604: Psyr_2604 - conserved hypothetical protein; putative membrane protein, at 3,058,574 to 3,059,179
_2604
Psyr_2605: Psyr_2605 - transposase, putative, at 3,059,276 to 3,059,773
_2605
Position (kb)
3058
3059
3060 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3057.679 kb on + strand, within Psyr_2603 at 3057.679 kb on + strand, within Psyr_2603 at 3057.679 kb on + strand, within Psyr_2603 at 3057.679 kb on + strand, within Psyr_2603 at 3057.680 kb on - strand, within Psyr_2603 at 3057.680 kb on - strand, within Psyr_2603 at 3057.680 kb on - strand, within Psyr_2603 at 3057.680 kb on - strand, within Psyr_2603 at 3057.909 kb on + strand, within Psyr_2603 at 3057.910 kb on - strand, within Psyr_2603 at 3057.942 kb on + strand, within Psyr_2603 at 3057.942 kb on + strand, within Psyr_2603 at 3057.943 kb on - strand, within Psyr_2603 at 3057.943 kb on - strand, within Psyr_2603 at 3057.943 kb on - strand, within Psyr_2603 at 3057.943 kb on - strand, within Psyr_2603 at 3058.032 kb on + strand, within Psyr_2603 at 3058.032 kb on + strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.075 kb on - strand, within Psyr_2603 at 3058.126 kb on + strand, within Psyr_2603 at 3058.127 kb on - strand, within Psyr_2603 at 3058.176 kb on + strand, within Psyr_2603 at 3058.176 kb on + strand, within Psyr_2603 at 3058.176 kb on + strand, within Psyr_2603 at 3058.177 kb on - strand, within Psyr_2603 at 3058.177 kb on - strand, within Psyr_2603 at 3058.177 kb on - strand, within Psyr_2603 at 3058.177 kb on - strand, within Psyr_2603 at 3058.183 kb on + strand, within Psyr_2603 at 3058.183 kb on + strand, within Psyr_2603 at 3058.183 kb on + strand, within Psyr_2603 at 3058.183 kb on + strand, within Psyr_2603 at 3058.184 kb on - strand, within Psyr_2603 at 3058.184 kb on - strand, within Psyr_2603 at 3058.221 kb on + strand at 3058.222 kb on - strand at 3058.222 kb on - strand at 3058.222 kb on - strand at 3058.222 kb on - strand at 3058.225 kb on + strand at 3058.261 kb on + strand at 3058.261 kb on + strand at 3058.275 kb on - strand at 3058.333 kb on - strand at 3058.346 kb on - strand at 3058.346 kb on - strand at 3058.423 kb on - strand at 3058.433 kb on + strand at 3058.433 kb on + strand at 3058.433 kb on + strand at 3058.445 kb on + strand at 3058.445 kb on + strand at 3058.445 kb on + strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.499 kb on + strand at 3058.499 kb on + strand at 3058.528 kb on - strand at 3058.567 kb on - strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.586 kb on + strand at 3058.587 kb on - strand at 3058.675 kb on + strand, within Psyr_2604 at 3058.676 kb on - strand, within Psyr_2604 at 3058.715 kb on + strand, within Psyr_2604 at 3058.715 kb on + strand, within Psyr_2604 at 3058.715 kb on + strand, within Psyr_2604 at 3058.716 kb on - strand, within Psyr_2604 at 3058.716 kb on - strand, within Psyr_2604 at 3058.716 kb on - strand, within Psyr_2604 at 3058.769 kb on + strand, within Psyr_2604 at 3058.769 kb on + strand, within Psyr_2604 at 3058.769 kb on + strand, within Psyr_2604 at 3058.770 kb on - strand, within Psyr_2604 at 3058.820 kb on + strand, within Psyr_2604 at 3058.820 kb on + strand, within Psyr_2604 at 3058.820 kb on + strand, within Psyr_2604 at 3059.071 kb on - strand, within Psyr_2604 at 3059.148 kb on - strand at 3059.219 kb on - strand at 3059.222 kb on + strand at 3059.222 kb on + strand at 3059.222 kb on + strand at 3059.222 kb on + strand at 3059.223 kb on - strand at 3059.223 kb on - strand at 3059.223 kb on - strand at 3059.223 kb on - strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.227 kb on - strand at 3059.227 kb on - strand at 3059.227 kb on - strand at 3059.230 kb on + strand at 3059.230 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.247 kb on - strand at 3059.247 kb on - strand at 3059.247 kb on - strand at 3059.247 kb on - strand at 3059.292 kb on + strand at 3059.292 kb on + strand at 3059.293 kb on - strand at 3059.293 kb on - strand at 3059.293 kb on - strand at 3059.293 kb on - strand at 3059.481 kb on + strand, within Psyr_2605 at 3059.481 kb on + strand, within Psyr_2605 at 3059.482 kb on - strand, within Psyr_2605 at 3059.482 kb on - strand, within Psyr_2605 at 3059.605 kb on + strand, within Psyr_2605 at 3059.605 kb on + strand, within Psyr_2605 at 3059.605 kb on + strand, within Psyr_2605 at 3059.606 kb on - strand, within Psyr_2605 at 3059.606 kb on - strand, within Psyr_2605 at 3059.656 kb on - strand, within Psyr_2605 at 3059.673 kb on + strand, within Psyr_2605 at 3059.674 kb on - strand, within Psyr_2605 at 3059.674 kb on - strand, within Psyr_2605 at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.753 kb on - strand at 3059.753 kb on - strand at 3059.772 kb on - strand at 3059.792 kb on + strand at 3059.793 kb on - strand at 3060.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 3,057,679 + Psyr_2603 0.44 +0.4 3,057,679 + Psyr_2603 0.44 +1.4 3,057,679 + Psyr_2603 0.44 +0.1 3,057,679 + Psyr_2603 0.44 -0.1 3,057,680 - Psyr_2603 0.45 +1.1 3,057,680 - Psyr_2603 0.45 -1.3 3,057,680 - Psyr_2603 0.45 +0.4 3,057,680 - Psyr_2603 0.45 +0.9 3,057,909 + Psyr_2603 0.64 +0.8 3,057,910 - Psyr_2603 0.64 +0.5 3,057,942 + Psyr_2603 0.67 -1.9 3,057,942 + Psyr_2603 0.67 -0.3 3,057,943 - Psyr_2603 0.67 -0.3 3,057,943 - Psyr_2603 0.67 +0.0 3,057,943 - Psyr_2603 0.67 -2.1 3,057,943 - Psyr_2603 0.67 -0.0 3,058,032 + Psyr_2603 0.75 +0.6 3,058,032 + Psyr_2603 0.75 -0.0 3,058,075 - Psyr_2603 0.78 +0.5 3,058,075 - Psyr_2603 0.78 -0.8 3,058,075 - Psyr_2603 0.78 +0.7 3,058,075 - Psyr_2603 0.78 -0.9 3,058,075 - Psyr_2603 0.78 +2.2 3,058,075 - Psyr_2603 0.78 -0.1 3,058,075 - Psyr_2603 0.78 +0.4 3,058,075 - Psyr_2603 0.78 -1.2 3,058,126 + Psyr_2603 0.83 +0.5 3,058,127 - Psyr_2603 0.83 +0.3 3,058,176 + Psyr_2603 0.87 -0.4 3,058,176 + Psyr_2603 0.87 +0.1 3,058,176 + Psyr_2603 0.87 -1.1 3,058,177 - Psyr_2603 0.87 -2.5 3,058,177 - Psyr_2603 0.87 +2.1 3,058,177 - Psyr_2603 0.87 +1.5 3,058,177 - Psyr_2603 0.87 +0.5 3,058,183 + Psyr_2603 0.88 +0.5 3,058,183 + Psyr_2603 0.88 +1.0 3,058,183 + Psyr_2603 0.88 -0.4 3,058,183 + Psyr_2603 0.88 -1.2 3,058,184 - Psyr_2603 0.88 -0.4 3,058,184 - Psyr_2603 0.88 +1.7 3,058,221 + -0.7 3,058,222 - -1.8 3,058,222 - +2.1 3,058,222 - -1.5 3,058,222 - -0.6 3,058,225 + -0.5 3,058,261 + -0.7 3,058,261 + -2.3 3,058,275 - +0.1 3,058,333 - -0.2 3,058,346 - -0.9 3,058,346 - -1.5 3,058,423 - -1.2 3,058,433 + -0.5 3,058,433 + +1.2 3,058,433 + +3.1 3,058,445 + -0.5 3,058,445 + -0.0 3,058,445 + +0.5 3,058,446 - +0.7 3,058,446 - -1.8 3,058,446 - -2.7 3,058,446 - -1.3 3,058,446 - -2.7 3,058,499 + -1.1 3,058,499 + -1.5 3,058,528 - -2.8 3,058,567 - -1.8 3,058,583 + -0.0 3,058,583 + -0.5 3,058,583 + -2.5 3,058,583 + +1.1 3,058,583 + -2.5 3,058,583 + +0.3 3,058,583 + -1.1 3,058,584 - -1.8 3,058,584 - +2.8 3,058,584 - +1.7 3,058,584 - +0.5 3,058,584 - -0.5 3,058,586 + +0.5 3,058,587 - +2.8 3,058,675 + Psyr_2604 0.17 -1.5 3,058,676 - Psyr_2604 0.17 -0.6 3,058,715 + Psyr_2604 0.23 -0.5 3,058,715 + Psyr_2604 0.23 +0.5 3,058,715 + Psyr_2604 0.23 -0.1 3,058,716 - Psyr_2604 0.23 -2.1 3,058,716 - Psyr_2604 0.23 -1.6 3,058,716 - Psyr_2604 0.23 -0.6 3,058,769 + Psyr_2604 0.32 -0.6 3,058,769 + Psyr_2604 0.32 -0.5 3,058,769 + Psyr_2604 0.32 -0.3 3,058,770 - Psyr_2604 0.32 +0.4 3,058,820 + Psyr_2604 0.41 -0.1 3,058,820 + Psyr_2604 0.41 +0.2 3,058,820 + Psyr_2604 0.41 -1.3 3,059,071 - Psyr_2604 0.82 +0.2 3,059,148 - -0.8 3,059,219 - +1.5 3,059,222 + +0.3 3,059,222 + -0.4 3,059,222 + +1.0 3,059,222 + +1.1 3,059,223 - -0.5 3,059,223 - +0.3 3,059,223 - -0.4 3,059,223 - -2.7 3,059,226 + +0.1 3,059,226 + +1.2 3,059,226 + +1.3 3,059,226 + -0.8 3,059,226 + +0.1 3,059,226 + -0.3 3,059,226 + -2.1 3,059,226 + +1.1 3,059,227 - -1.4 3,059,227 - +1.7 3,059,227 - -1.1 3,059,230 + -2.5 3,059,230 + -0.2 3,059,246 + -2.1 3,059,246 + -0.9 3,059,246 + -0.5 3,059,246 + +0.3 3,059,246 + +0.5 3,059,246 + -2.5 3,059,247 - +1.9 3,059,247 - +0.3 3,059,247 - +0.1 3,059,247 - +0.5 3,059,292 + -0.8 3,059,292 + +0.1 3,059,293 - -0.1 3,059,293 - -1.1 3,059,293 - +1.1 3,059,293 - -0.2 3,059,481 + Psyr_2605 0.41 +1.3 3,059,481 + Psyr_2605 0.41 -2.7 3,059,482 - Psyr_2605 0.41 +0.2 3,059,482 - Psyr_2605 0.41 +1.8 3,059,605 + Psyr_2605 0.66 -0.5 3,059,605 + Psyr_2605 0.66 +0.6 3,059,605 + Psyr_2605 0.66 -1.2 3,059,606 - Psyr_2605 0.66 -0.2 3,059,606 - Psyr_2605 0.66 +0.7 3,059,656 - Psyr_2605 0.76 +0.7 3,059,673 + Psyr_2605 0.80 -1.6 3,059,674 - Psyr_2605 0.80 -0.8 3,059,674 - Psyr_2605 0.80 -0.7 3,059,752 + -1.1 3,059,752 + -0.8 3,059,752 + +0.1 3,059,752 + +0.5 3,059,752 + -1.8 3,059,752 + -3.3 3,059,753 - -0.5 3,059,753 - +0.6 3,059,772 - -0.1 3,059,792 + -3.3 3,059,793 - +0.0 3,060,064 - +0.6
Or see this region's nucleotide sequence