Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2604

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2603 and Psyr_2604 are separated by 245 nucleotidesPsyr_2604 and Psyr_2605 are separated by 96 nucleotides Psyr_2603: Psyr_2603 - Secretion protein HlyD, at 3,057,159 to 3,058,328 _2603 Psyr_2604: Psyr_2604 - conserved hypothetical protein; putative membrane protein, at 3,058,574 to 3,059,179 _2604 Psyr_2605: Psyr_2605 - transposase, putative, at 3,059,276 to 3,059,773 _2605 Position (kb) 3058 3059 3060Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3057.679 kb on + strand, within Psyr_2603at 3057.679 kb on + strand, within Psyr_2603at 3057.679 kb on + strand, within Psyr_2603at 3057.679 kb on + strand, within Psyr_2603at 3057.680 kb on - strand, within Psyr_2603at 3057.680 kb on - strand, within Psyr_2603at 3057.680 kb on - strand, within Psyr_2603at 3057.680 kb on - strand, within Psyr_2603at 3057.909 kb on + strand, within Psyr_2603at 3057.910 kb on - strand, within Psyr_2603at 3057.942 kb on + strand, within Psyr_2603at 3057.942 kb on + strand, within Psyr_2603at 3057.943 kb on - strand, within Psyr_2603at 3057.943 kb on - strand, within Psyr_2603at 3057.943 kb on - strand, within Psyr_2603at 3057.943 kb on - strand, within Psyr_2603at 3058.032 kb on + strand, within Psyr_2603at 3058.032 kb on + strand, within Psyr_2603at 3058.075 kb on - strand, within Psyr_2603at 3058.075 kb on - strand, within Psyr_2603at 3058.075 kb on - strand, within Psyr_2603at 3058.075 kb on - strand, within Psyr_2603at 3058.075 kb on - strand, within Psyr_2603at 3058.075 kb on - strand, within Psyr_2603at 3058.075 kb on - strand, within Psyr_2603at 3058.075 kb on - strand, within Psyr_2603at 3058.126 kb on + strand, within Psyr_2603at 3058.127 kb on - strand, within Psyr_2603at 3058.176 kb on + strand, within Psyr_2603at 3058.176 kb on + strand, within Psyr_2603at 3058.176 kb on + strand, within Psyr_2603at 3058.177 kb on - strand, within Psyr_2603at 3058.177 kb on - strand, within Psyr_2603at 3058.177 kb on - strand, within Psyr_2603at 3058.177 kb on - strand, within Psyr_2603at 3058.183 kb on + strand, within Psyr_2603at 3058.183 kb on + strand, within Psyr_2603at 3058.183 kb on + strand, within Psyr_2603at 3058.183 kb on + strand, within Psyr_2603at 3058.184 kb on - strand, within Psyr_2603at 3058.184 kb on - strand, within Psyr_2603at 3058.221 kb on + strandat 3058.222 kb on - strandat 3058.222 kb on - strandat 3058.222 kb on - strandat 3058.222 kb on - strandat 3058.225 kb on + strandat 3058.261 kb on + strandat 3058.261 kb on + strandat 3058.275 kb on - strandat 3058.333 kb on - strandat 3058.346 kb on - strandat 3058.346 kb on - strandat 3058.423 kb on - strandat 3058.433 kb on + strandat 3058.433 kb on + strandat 3058.433 kb on + strandat 3058.445 kb on + strandat 3058.445 kb on + strandat 3058.445 kb on + strandat 3058.446 kb on - strandat 3058.446 kb on - strandat 3058.446 kb on - strandat 3058.446 kb on - strandat 3058.446 kb on - strandat 3058.499 kb on + strandat 3058.499 kb on + strandat 3058.528 kb on - strandat 3058.567 kb on - strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.583 kb on + strandat 3058.584 kb on - strandat 3058.584 kb on - strandat 3058.584 kb on - strandat 3058.584 kb on - strandat 3058.584 kb on - strandat 3058.586 kb on + strandat 3058.587 kb on - strandat 3058.675 kb on + strand, within Psyr_2604at 3058.676 kb on - strand, within Psyr_2604at 3058.715 kb on + strand, within Psyr_2604at 3058.715 kb on + strand, within Psyr_2604at 3058.715 kb on + strand, within Psyr_2604at 3058.716 kb on - strand, within Psyr_2604at 3058.716 kb on - strand, within Psyr_2604at 3058.716 kb on - strand, within Psyr_2604at 3058.769 kb on + strand, within Psyr_2604at 3058.769 kb on + strand, within Psyr_2604at 3058.769 kb on + strand, within Psyr_2604at 3058.770 kb on - strand, within Psyr_2604at 3058.820 kb on + strand, within Psyr_2604at 3058.820 kb on + strand, within Psyr_2604at 3058.820 kb on + strand, within Psyr_2604at 3059.071 kb on - strand, within Psyr_2604at 3059.148 kb on - strandat 3059.219 kb on - strandat 3059.222 kb on + strandat 3059.222 kb on + strandat 3059.222 kb on + strandat 3059.222 kb on + strandat 3059.223 kb on - strandat 3059.223 kb on - strandat 3059.223 kb on - strandat 3059.223 kb on - strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.226 kb on + strandat 3059.227 kb on - strandat 3059.227 kb on - strandat 3059.227 kb on - strandat 3059.230 kb on + strandat 3059.230 kb on + strandat 3059.246 kb on + strandat 3059.246 kb on + strandat 3059.246 kb on + strandat 3059.246 kb on + strandat 3059.246 kb on + strandat 3059.246 kb on + strandat 3059.247 kb on - strandat 3059.247 kb on - strandat 3059.247 kb on - strandat 3059.247 kb on - strandat 3059.292 kb on + strandat 3059.292 kb on + strandat 3059.293 kb on - strandat 3059.293 kb on - strandat 3059.293 kb on - strandat 3059.293 kb on - strandat 3059.481 kb on + strand, within Psyr_2605at 3059.481 kb on + strand, within Psyr_2605at 3059.482 kb on - strand, within Psyr_2605at 3059.482 kb on - strand, within Psyr_2605at 3059.605 kb on + strand, within Psyr_2605at 3059.605 kb on + strand, within Psyr_2605at 3059.605 kb on + strand, within Psyr_2605at 3059.606 kb on - strand, within Psyr_2605at 3059.606 kb on - strand, within Psyr_2605at 3059.656 kb on - strand, within Psyr_2605at 3059.673 kb on + strand, within Psyr_2605at 3059.674 kb on - strand, within Psyr_2605at 3059.674 kb on - strand, within Psyr_2605at 3059.752 kb on + strandat 3059.752 kb on + strandat 3059.752 kb on + strandat 3059.752 kb on + strandat 3059.752 kb on + strandat 3059.752 kb on + strandat 3059.753 kb on - strandat 3059.753 kb on - strandat 3059.772 kb on - strandat 3059.792 kb on + strandat 3059.793 kb on - strandat 3060.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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3,057,679 + Psyr_2603 0.44 +0.4
3,057,679 + Psyr_2603 0.44 +1.4
3,057,679 + Psyr_2603 0.44 +0.1
3,057,679 + Psyr_2603 0.44 -0.1
3,057,680 - Psyr_2603 0.45 +1.1
3,057,680 - Psyr_2603 0.45 -1.3
3,057,680 - Psyr_2603 0.45 +0.4
3,057,680 - Psyr_2603 0.45 +0.9
3,057,909 + Psyr_2603 0.64 +0.8
3,057,910 - Psyr_2603 0.64 +0.5
3,057,942 + Psyr_2603 0.67 -1.9
3,057,942 + Psyr_2603 0.67 -0.3
3,057,943 - Psyr_2603 0.67 -0.3
3,057,943 - Psyr_2603 0.67 +0.0
3,057,943 - Psyr_2603 0.67 -2.1
3,057,943 - Psyr_2603 0.67 -0.0
3,058,032 + Psyr_2603 0.75 +0.6
3,058,032 + Psyr_2603 0.75 -0.0
3,058,075 - Psyr_2603 0.78 +0.5
3,058,075 - Psyr_2603 0.78 -0.8
3,058,075 - Psyr_2603 0.78 +0.7
3,058,075 - Psyr_2603 0.78 -0.9
3,058,075 - Psyr_2603 0.78 +2.2
3,058,075 - Psyr_2603 0.78 -0.1
3,058,075 - Psyr_2603 0.78 +0.4
3,058,075 - Psyr_2603 0.78 -1.2
3,058,126 + Psyr_2603 0.83 +0.5
3,058,127 - Psyr_2603 0.83 +0.3
3,058,176 + Psyr_2603 0.87 -0.4
3,058,176 + Psyr_2603 0.87 +0.1
3,058,176 + Psyr_2603 0.87 -1.1
3,058,177 - Psyr_2603 0.87 -2.5
3,058,177 - Psyr_2603 0.87 +2.1
3,058,177 - Psyr_2603 0.87 +1.5
3,058,177 - Psyr_2603 0.87 +0.5
3,058,183 + Psyr_2603 0.88 +0.5
3,058,183 + Psyr_2603 0.88 +1.0
3,058,183 + Psyr_2603 0.88 -0.4
3,058,183 + Psyr_2603 0.88 -1.2
3,058,184 - Psyr_2603 0.88 -0.4
3,058,184 - Psyr_2603 0.88 +1.7
3,058,221 + -0.7
3,058,222 - -1.8
3,058,222 - +2.1
3,058,222 - -1.5
3,058,222 - -0.6
3,058,225 + -0.5
3,058,261 + -0.7
3,058,261 + -2.3
3,058,275 - +0.1
3,058,333 - -0.2
3,058,346 - -0.9
3,058,346 - -1.5
3,058,423 - -1.2
3,058,433 + -0.5
3,058,433 + +1.2
3,058,433 + +3.1
3,058,445 + -0.5
3,058,445 + -0.0
3,058,445 + +0.5
3,058,446 - +0.7
3,058,446 - -1.8
3,058,446 - -2.7
3,058,446 - -1.3
3,058,446 - -2.7
3,058,499 + -1.1
3,058,499 + -1.5
3,058,528 - -2.8
3,058,567 - -1.8
3,058,583 + -0.0
3,058,583 + -0.5
3,058,583 + -2.5
3,058,583 + +1.1
3,058,583 + -2.5
3,058,583 + +0.3
3,058,583 + -1.1
3,058,584 - -1.8
3,058,584 - +2.8
3,058,584 - +1.7
3,058,584 - +0.5
3,058,584 - -0.5
3,058,586 + +0.5
3,058,587 - +2.8
3,058,675 + Psyr_2604 0.17 -1.5
3,058,676 - Psyr_2604 0.17 -0.6
3,058,715 + Psyr_2604 0.23 -0.5
3,058,715 + Psyr_2604 0.23 +0.5
3,058,715 + Psyr_2604 0.23 -0.1
3,058,716 - Psyr_2604 0.23 -2.1
3,058,716 - Psyr_2604 0.23 -1.6
3,058,716 - Psyr_2604 0.23 -0.6
3,058,769 + Psyr_2604 0.32 -0.6
3,058,769 + Psyr_2604 0.32 -0.5
3,058,769 + Psyr_2604 0.32 -0.3
3,058,770 - Psyr_2604 0.32 +0.4
3,058,820 + Psyr_2604 0.41 -0.1
3,058,820 + Psyr_2604 0.41 +0.2
3,058,820 + Psyr_2604 0.41 -1.3
3,059,071 - Psyr_2604 0.82 +0.2
3,059,148 - -0.8
3,059,219 - +1.5
3,059,222 + +0.3
3,059,222 + -0.4
3,059,222 + +1.0
3,059,222 + +1.1
3,059,223 - -0.5
3,059,223 - +0.3
3,059,223 - -0.4
3,059,223 - -2.7
3,059,226 + +0.1
3,059,226 + +1.2
3,059,226 + +1.3
3,059,226 + -0.8
3,059,226 + +0.1
3,059,226 + -0.3
3,059,226 + -2.1
3,059,226 + +1.1
3,059,227 - -1.4
3,059,227 - +1.7
3,059,227 - -1.1
3,059,230 + -2.5
3,059,230 + -0.2
3,059,246 + -2.1
3,059,246 + -0.9
3,059,246 + -0.5
3,059,246 + +0.3
3,059,246 + +0.5
3,059,246 + -2.5
3,059,247 - +1.9
3,059,247 - +0.3
3,059,247 - +0.1
3,059,247 - +0.5
3,059,292 + -0.8
3,059,292 + +0.1
3,059,293 - -0.1
3,059,293 - -1.1
3,059,293 - +1.1
3,059,293 - -0.2
3,059,481 + Psyr_2605 0.41 +1.3
3,059,481 + Psyr_2605 0.41 -2.7
3,059,482 - Psyr_2605 0.41 +0.2
3,059,482 - Psyr_2605 0.41 +1.8
3,059,605 + Psyr_2605 0.66 -0.5
3,059,605 + Psyr_2605 0.66 +0.6
3,059,605 + Psyr_2605 0.66 -1.2
3,059,606 - Psyr_2605 0.66 -0.2
3,059,606 - Psyr_2605 0.66 +0.7
3,059,656 - Psyr_2605 0.76 +0.7
3,059,673 + Psyr_2605 0.80 -1.6
3,059,674 - Psyr_2605 0.80 -0.8
3,059,674 - Psyr_2605 0.80 -0.7
3,059,752 + -1.1
3,059,752 + -0.8
3,059,752 + +0.1
3,059,752 + +0.5
3,059,752 + -1.8
3,059,752 + -3.3
3,059,753 - -0.5
3,059,753 - +0.6
3,059,772 - -0.1
3,059,792 + -3.3
3,059,793 - +0.0
3,060,064 - +0.6

Or see this region's nucleotide sequence