Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1586

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,782,814	+		Psyr_1585	0.81	+0.5
1,782,814	+		Psyr_1585	0.81	-2.9
1,783,072	+		Psyr_1585	0.89	-0.1
1,783,073	-		Psyr_1585	0.89	-0.0
1,783,073	-		Psyr_1585	0.89	+0.1
1,783,073	-		Psyr_1585	0.89	-1.4
1,783,222	-				+0.4
1,783,247	-				-0.6
1,783,266	+				-2.1
1,783,266	+				+0.4
1,783,266	+				+1.0
1,783,266	+				+0.4
1,783,318	+				+0.0
1,783,318	+				-0.3
1,783,318	+				-1.1
1,783,319	-				+1.5
1,783,319	-				-0.3
1,783,340	-				-0.3
1,783,379	-				+1.0
1,783,391	-				-0.4
1,783,418	+				+0.8
1,783,418	+				+0.6
1,783,419	-				+0.5
1,783,420	+				+0.2
1,783,420	+				-0.1
1,783,420	+				+1.5
1,783,420	+				-2.0
1,783,420	+				-2.1
1,783,420	+				-2.1
1,783,420	+				-0.1
1,783,420	+				+0.8
1,783,420	+				-1.8
1,783,420	+				+0.8
1,783,420	+				-0.6
1,783,420	+				+0.9
1,783,420	+				-1.1
1,783,420	+				+0.1
1,783,420	+				-1.4
1,783,420	+				-0.7
1,783,420	+				-0.7
1,783,420	+				+0.1
1,783,420	+				+1.2
1,783,420	+				+0.3
1,783,420	+				-1.1
1,783,420	+				-0.8
1,783,420	+				-2.7
1,783,420	+				+0.6
1,783,420	+				-1.2
1,783,421	-				+0.4
1,783,421	-				-1.0
1,783,421	-				+0.3
1,783,421	-				+1.5
1,783,421	-				-0.5
1,783,421	-				+0.2
1,783,421	-				+0.9
1,783,421	-				-0.2
1,783,421	-				+0.5
1,783,421	-				+1.5
1,783,421	-				+1.1
1,783,421	-				+0.9
1,783,421	-				+0.4
1,783,421	-				-0.0
1,783,421	-				-1.1
1,783,421	-				-1.9
1,783,421	-				+1.6
1,783,421	-				-1.2
1,783,421	-				-2.9
1,783,421	-				+1.0
1,783,421	-				-2.4
1,783,421	-				-0.7
1,783,421	-				+1.7
1,783,421	-				+0.1
1,783,425	-				-2.8
1,783,463	+				-0.4
1,783,463	+				+1.0
1,783,463	+				+1.0
1,783,464	-				+0.1
1,783,464	-				+0.3
1,783,464	-				-0.9
1,783,480	+				+1.8
1,783,583	-				-0.4
1,783,639	+				-1.5
1,783,640	-				+0.1
1,783,640	-				-0.2
1,783,640	-				+0.8
1,783,829	+				+0.6
1,783,830	-				+1.3
1,783,830	-				+0.9
1,783,830	-				+0.8
1,783,862	+				-1.0
1,783,862	+				+1.8
1,783,862	+				+0.1
1,783,863	-				+1.0
1,783,863	-				-2.1
1,783,863	-				+0.6
1,783,863	-				-1.5
1,783,863	-				-0.5
1,783,863	-				-2.2
1,783,863	-				-1.3
1,783,863	-				+0.1
1,783,940	+		Psyr_1586	0.12	-0.2
1,784,093	+		Psyr_1586	0.21	-0.5
1,784,094	-		Psyr_1586	0.21	-0.1
1,784,222	+		Psyr_1586	0.28	-0.1
1,784,222	+		Psyr_1586	0.28	-1.8
1,784,222	+		Psyr_1586	0.28	+2.2
1,784,222	+		Psyr_1586	0.28	+0.6
1,784,223	-		Psyr_1586	0.28	+1.1
1,784,223	-		Psyr_1586	0.28	+0.3
1,784,437	+		Psyr_1586	0.39	-0.4
1,784,437	+		Psyr_1586	0.39	+0.2
1,784,441	+		Psyr_1586	0.39	+1.1
1,784,441	+		Psyr_1586	0.39	+0.8
1,784,441	+		Psyr_1586	0.39	-0.4
1,784,441	+		Psyr_1586	0.39	+2.8
1,784,441	+		Psyr_1586	0.39	-0.7
1,784,441	+		Psyr_1586	0.39	-1.9
1,784,442	-		Psyr_1586	0.39	+1.6
1,784,442	-		Psyr_1586	0.39	-0.1
1,784,442	-		Psyr_1586	0.39	+0.1
1,784,442	-		Psyr_1586	0.39	+0.8
1,784,442	-		Psyr_1586	0.39	+0.3
1,784,442	-		Psyr_1586	0.39	-0.4
1,784,442	-		Psyr_1586	0.39	+0.9
1,784,442	-		Psyr_1586	0.39	-1.1
1,784,442	-		Psyr_1586	0.39	+1.0
1,784,462	+		Psyr_1586	0.40	+2.2
1,784,462	+		Psyr_1586	0.40	-0.1
1,784,481	-		Psyr_1586	0.41	-1.2
1,784,481	-		Psyr_1586	0.41	-0.1
1,784,481	-		Psyr_1586	0.41	+0.5
1,784,518	-		Psyr_1586	0.43	+1.6
1,784,572	+		Psyr_1586	0.46	+1.0
1,784,572	+		Psyr_1586	0.46	+0.8
1,784,573	-		Psyr_1586	0.46	-0.4
1,784,573	-		Psyr_1586	0.46	+1.7
1,784,759	+		Psyr_1586	0.56	+0.4
1,784,759	+		Psyr_1586	0.56	+0.0
1,784,759	+		Psyr_1586	0.56	+0.3
1,784,760	-		Psyr_1586	0.56	-1.3
1,784,760	-		Psyr_1586	0.56	-0.4
1,784,760	-		Psyr_1586	0.56	-0.4
1,784,760	-		Psyr_1586	0.56	+1.3
1,784,760	-		Psyr_1586	0.56	-2.1
1,784,760	-		Psyr_1586	0.56	+1.2
1,784,760	-		Psyr_1586	0.56	+0.1
1,784,774	+		Psyr_1586	0.57	-0.6
1,784,956	+		Psyr_1586	0.67	-0.0
1,784,957	-		Psyr_1586	0.67	+0.1
1,784,957	-		Psyr_1586	0.67	+0.1
1,784,957	-		Psyr_1586	0.67	+1.3
1,784,960	+		Psyr_1586	0.67	-0.2
1,784,960	+		Psyr_1586	0.67	+0.7
1,784,960	+		Psyr_1586	0.67	+1.7
1,784,960	+		Psyr_1586	0.67	-0.6
1,784,960	+		Psyr_1586	0.67	+0.7
1,784,960	+		Psyr_1586	0.67	-0.5
1,784,961	-		Psyr_1586	0.67	-0.4
1,784,961	-		Psyr_1586	0.67	-0.1
1,784,961	-		Psyr_1586	0.67	-3.2
1,784,961	-		Psyr_1586	0.67	+0.9
1,784,961	-		Psyr_1586	0.67	+1.1
1,784,961	-		Psyr_1586	0.67	-1.2
1,784,961	-		Psyr_1586	0.67	-0.1
1,784,961	-		Psyr_1586	0.67	-0.4
1,785,027	-		Psyr_1586	0.70	-1.5
1,785,158	+		Psyr_1586	0.77	+0.3
1,785,159	-		Psyr_1586	0.77	-0.9
1,785,159	-		Psyr_1586	0.77	-2.2
1,785,159	-		Psyr_1586	0.77	+0.6
1,785,159	-		Psyr_1586	0.77	-2.1
1,785,159	-		Psyr_1586	0.77	-1.4
1,785,161	+		Psyr_1586	0.78	+1.2
1,785,161	+		Psyr_1586	0.78	+0.8
1,785,161	+		Psyr_1586	0.78	+0.2
1,785,162	-		Psyr_1586	0.78	-1.7
1,785,162	-		Psyr_1586	0.78	+0.5
1,785,171	-		Psyr_1586	0.78	-0.3
1,785,171	-		Psyr_1586	0.78	+0.3
1,785,187	+		Psyr_1586	0.79	+0.6
1,785,187	+		Psyr_1586	0.79	-1.4
1,785,187	+		Psyr_1586	0.79	-0.7
1,785,188	-		Psyr_1586	0.79	+0.5
1,785,251	+		Psyr_1586	0.82	+0.1
1,785,251	+		Psyr_1586	0.82	+1.2
1,785,251	+		Psyr_1586	0.82	+0.4
1,785,251	+		Psyr_1586	0.82	-1.2
1,785,251	+		Psyr_1586	0.82	+2.3
1,785,251	+		Psyr_1586	0.82	+1.7
1,785,252	-		Psyr_1586	0.82	-1.9
1,785,252	-		Psyr_1586	0.82	+0.2
1,785,281	+		Psyr_1586	0.84	-0.7
1,785,540	+				-0.9
1,785,541	-				+0.1
1,785,541	-				+0.4
1,785,594	+				+1.9
1,785,594	+				+0.4
1,785,653	+				+2.5
1,785,653	+				-1.4
1,785,653	+				+0.8
1,785,654	-				+0.9
1,785,654	-				-1.2
1,785,654	-				+0.2
1,785,880	-				-0.4
1,785,880	-				-0.8
1,785,880	-				-0.0
1,785,898	+				+0.8
1,785,898	+				-0.9
1,785,899	-				+0.2
1,785,899	-				+0.8
1,785,899	-				+1.2
1,785,899	-				-0.1
1,785,899	-				+0.2
1,786,068	-				+0.5
1,786,068	-				+2.4
1,786,094	+				+1.7
1,786,094	+				-0.2
1,786,094	+				+0.8
1,786,095	-				-0.2
1,786,095	-				+0.2
1,786,123	+				-0.5
1,786,123	+				+0.1
1,786,123	+				-0.5
1,786,123	+				-2.9
1,786,124	-				+0.9
1,786,148	+				-0.4
1,786,148	+				-0.9
1,786,149	-				+0.2
1,786,307	-				-1.9
1,786,421	+		Psyr_1587	0.36	-0.1
1,786,422	-		Psyr_1587	0.36	-0.2
1,786,422	-		Psyr_1587	0.36	-1.7
1,786,422	-		Psyr_1587	0.36	-1.1
1,786,459	+		Psyr_1587	0.40	+0.7
1,786,459	+		Psyr_1587	0.40	-1.2
1,786,460	-		Psyr_1587	0.40	-1.6
1,786,545	-		Psyr_1587	0.49	+1.2