Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1481

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,669,247	+		Psyr_1479	0.77	-2.2
1,669,247	+		Psyr_1479	0.77	+0.3
1,669,247	+		Psyr_1479	0.77	-1.1
1,669,247	+		Psyr_1479	0.77	-0.1
1,669,247	+		Psyr_1479	0.77	+0.2
1,669,248	-		Psyr_1479	0.77	+0.2
1,669,248	-		Psyr_1479	0.77	-0.2
1,669,248	-		Psyr_1479	0.77	-0.7
1,669,261	+		Psyr_1479	0.78	-0.1
1,669,261	+		Psyr_1479	0.78	-1.5
1,669,324	+		Psyr_1479	0.84	-0.3
1,669,324	+		Psyr_1479	0.84	+0.6
1,669,324	+		Psyr_1479	0.84	-0.1
1,669,324	+		Psyr_1479	0.84	-2.2
1,669,325	-		Psyr_1479	0.84	-1.3
1,669,325	-		Psyr_1479	0.84	+0.2
1,669,325	-		Psyr_1479	0.84	+1.6
1,669,325	-		Psyr_1479	0.84	-0.5
1,669,325	-		Psyr_1479	0.84	-0.5
1,669,353	+		Psyr_1479	0.86	+0.5
1,669,353	+		Psyr_1479	0.86	+0.5
1,669,353	+		Psyr_1479	0.86	+0.6
1,669,353	+		Psyr_1479	0.86	+0.5
1,669,354	-		Psyr_1479	0.86	+0.8
1,669,374	+		Psyr_1479	0.88	+3.8
1,669,374	+		Psyr_1479	0.88	-0.0
1,669,375	-		Psyr_1479	0.88	+0.3
1,669,375	-		Psyr_1479	0.88	+1.6
1,669,435	-				-0.3
1,669,482	+				+0.1
1,669,525	+				-0.2
1,669,575	-				+0.9
1,669,637	+		Psyr_1480	0.19	-2.7
1,669,801	-		Psyr_1480	0.46	-0.4
1,669,810	+		Psyr_1480	0.47	-0.2
1,669,909	+		Psyr_1480	0.64	+1.4
1,669,909	+		Psyr_1480	0.64	+0.3
1,669,909	+		Psyr_1480	0.64	-2.3
1,669,909	+		Psyr_1480	0.64	+1.0
1,669,910	-		Psyr_1480	0.64	+0.4
1,669,910	-		Psyr_1480	0.64	-0.6
1,669,910	-		Psyr_1480	0.64	-0.3
1,669,910	-		Psyr_1480	0.64	+1.8
1,669,910	-		Psyr_1480	0.64	-0.2
1,669,956	+		Psyr_1480	0.72	-0.2
1,669,956	+		Psyr_1480	0.72	+0.2
1,669,994	-		Psyr_1480	0.78	-1.8
1,669,999	-		Psyr_1480	0.79	+1.2
1,670,079	+				-0.6
1,670,079	+				-1.3
1,670,079	+				+1.2
1,670,080	-				-0.0
1,670,080	-				+1.4
1,670,080	-				-0.6
1,670,080	-				+0.4
1,670,080	-				-0.3
1,670,122	-				-0.1
1,670,127	+				+1.0
1,670,127	+				+1.2
1,670,127	+				-0.0
1,670,127	+				+1.0
1,670,128	-				-0.0
1,670,128	-				+0.6
1,670,128	-				-0.9
1,670,128	-				+0.7
1,670,155	-				-0.7
1,670,177	-				-0.8
1,670,237	+		Psyr_1481	0.20	-0.2
1,670,247	+		Psyr_1481	0.22	+0.0
1,670,247	+		Psyr_1481	0.22	+0.6
1,670,247	+		Psyr_1481	0.22	-2.2
1,670,248	-		Psyr_1481	0.22	+1.8
1,670,309	+		Psyr_1481	0.34	+1.4
1,670,309	+		Psyr_1481	0.34	+0.1
1,670,310	-		Psyr_1481	0.34	-0.3
1,670,310	-		Psyr_1481	0.34	-2.6
1,670,310	-		Psyr_1481	0.34	-0.5
1,670,310	-		Psyr_1481	0.34	-0.0
1,670,319	+		Psyr_1481	0.35	+2.4
1,670,319	+		Psyr_1481	0.35	-1.0
1,670,319	+		Psyr_1481	0.35	-0.5
1,670,319	+		Psyr_1481	0.35	+1.6
1,670,320	-		Psyr_1481	0.36	+1.4
1,670,320	-		Psyr_1481	0.36	-3.0
1,670,320	-		Psyr_1481	0.36	+0.6
1,670,320	-		Psyr_1481	0.36	+1.7
1,670,320	-		Psyr_1481	0.36	-2.3
1,670,320	-		Psyr_1481	0.36	+0.8
1,670,323	+		Psyr_1481	0.36	-0.7
1,670,323	+		Psyr_1481	0.36	+0.7
1,670,323	+		Psyr_1481	0.36	+1.2
1,670,324	-		Psyr_1481	0.36	+1.0
1,670,324	-		Psyr_1481	0.36	-0.7
1,670,324	-		Psyr_1481	0.36	+1.3
1,670,324	-		Psyr_1481	0.36	+1.4
1,670,324	-		Psyr_1481	0.36	-1.3
1,670,354	+		Psyr_1481	0.42	-2.1
1,670,354	+		Psyr_1481	0.42	-0.0
1,670,354	+		Psyr_1481	0.42	-0.6
1,670,355	-		Psyr_1481	0.42	-0.5
1,670,355	-		Psyr_1481	0.42	-2.7
1,670,355	-		Psyr_1481	0.42	+0.8
1,670,355	-		Psyr_1481	0.42	+1.0
1,670,388	+		Psyr_1481	0.48	+0.1
1,670,388	+		Psyr_1481	0.48	-1.6
1,670,388	+		Psyr_1481	0.48	-1.0
1,670,388	+		Psyr_1481	0.48	-2.0
1,670,388	+		Psyr_1481	0.48	+0.8
1,670,388	+		Psyr_1481	0.48	-0.1
1,670,388	+		Psyr_1481	0.48	-1.3
1,670,388	+		Psyr_1481	0.48	-0.7
1,670,388	+		Psyr_1481	0.48	+0.1
1,670,388	+		Psyr_1481	0.48	+1.2
1,670,388	+		Psyr_1481	0.48	+1.0
1,670,388	+		Psyr_1481	0.48	+0.4
1,670,388	+		Psyr_1481	0.48	-2.2
1,670,388	+		Psyr_1481	0.48	+1.4
1,670,388	+		Psyr_1481	0.48	+1.1
1,670,389	-		Psyr_1481	0.48	-0.8
1,670,389	-		Psyr_1481	0.48	+0.3
1,670,389	-		Psyr_1481	0.48	-1.2
1,670,389	-		Psyr_1481	0.48	-0.2
1,670,389	-		Psyr_1481	0.48	+0.1
1,670,389	-		Psyr_1481	0.48	+1.2
1,670,389	-		Psyr_1481	0.48	-2.1
1,670,389	-		Psyr_1481	0.48	-0.8
1,670,389	-		Psyr_1481	0.48	-0.6
1,670,389	-		Psyr_1481	0.48	+0.3
1,670,389	-		Psyr_1481	0.48	+0.8
1,670,389	-		Psyr_1481	0.48	+1.0
1,670,389	-		Psyr_1481	0.48	-0.6
1,670,389	-		Psyr_1481	0.48	-1.0
1,670,389	-		Psyr_1481	0.48	-0.2
1,670,399	+		Psyr_1481	0.50	-2.9
1,670,399	+		Psyr_1481	0.50	-0.2
1,670,400	-		Psyr_1481	0.50	+0.4
1,670,488	+		Psyr_1481	0.66	+1.0
1,670,488	+		Psyr_1481	0.66	+0.4
1,670,489	-		Psyr_1481	0.66	-0.0
1,670,489	-		Psyr_1481	0.66	-0.2
1,670,505	+		Psyr_1481	0.69	+0.8
1,670,505	+		Psyr_1481	0.69	-0.6
1,670,580	+		Psyr_1481	0.83	+0.3
1,670,580	+		Psyr_1481	0.83	+0.6
1,670,581	-		Psyr_1481	0.83	+0.9
1,670,581	-		Psyr_1481	0.83	-1.8
1,670,581	-		Psyr_1481	0.83	+0.1
1,670,581	-		Psyr_1481	0.83	-1.6
1,670,656	+				-1.7
1,670,664	+				+1.6
1,670,664	+				-0.2
1,670,664	+				-1.1
1,670,664	+				-0.9
1,670,665	-				-1.1
1,670,665	-				-1.6
1,670,665	-				-2.0
1,670,665	-				+0.0
1,670,677	+				-2.0
1,670,677	+				-1.0
1,670,677	+				+2.1
1,670,678	-				-1.6
1,670,678	-				-0.6
1,670,692	-				+0.3
1,670,729	+				-0.1
1,670,729	+				+2.3
1,670,729	+				-1.3
1,670,729	+				-1.8
1,670,729	+				+0.1
1,670,730	-				-2.8
1,670,730	-				+0.5
1,670,730	-				-1.5
1,670,730	-				-1.8
1,670,730	-				-0.5
1,670,730	-				+0.2
1,670,731	+				+0.1
1,670,731	+				-1.6
1,670,731	+				-1.8
1,670,731	+				-0.4
1,670,731	+				+0.7
1,670,731	+				+1.7
1,670,731	+				-2.2
1,670,732	-				+0.3
1,670,732	-				-2.3
1,670,732	-				-0.2
1,670,732	-				-0.8
1,670,732	-				+0.9
1,670,732	-				-0.0
1,670,732	-				+0.6
1,670,732	-				+1.2
1,670,732	-				-0.3
1,670,732	-				+1.3
1,670,732	-				-1.4
1,670,732	-				+1.2
1,670,732	-				-2.3
1,670,732	-				+0.5
1,670,732	-				+0.8
1,670,815	+				+0.0
1,670,815	+				-1.3
1,670,815	+				+0.4
1,670,816	-				+1.7
1,670,844	+				-0.6
1,670,863	+				-1.3
1,670,863	+				-0.5
1,670,863	+				-2.5
1,670,863	+				+0.2
1,670,864	-				-0.1
1,670,864	-				-0.0
1,670,864	-				-1.2
1,671,050	+		Psyr_1482	0.20	-0.3
1,671,050	+		Psyr_1482	0.20	+0.2
1,671,050	+		Psyr_1482	0.20	-1.9
1,671,051	-		Psyr_1482	0.21	-1.9
1,671,051	-		Psyr_1482	0.21	+1.4
1,671,051	-		Psyr_1482	0.21	+0.6
1,671,063	+		Psyr_1482	0.21	+1.5
1,671,123	+		Psyr_1482	0.26	-0.8
1,671,123	+		Psyr_1482	0.26	+1.4
1,671,123	+		Psyr_1482	0.26	-2.6
1,671,123	+		Psyr_1482	0.26	-0.6
1,671,123	+		Psyr_1482	0.26	+0.3
1,671,123	+		Psyr_1482	0.26	+1.2
1,671,123	+		Psyr_1482	0.26	-0.0
1,671,123	+		Psyr_1482	0.26	+0.7
1,671,123	+		Psyr_1482	0.26	+0.3
1,671,124	-		Psyr_1482	0.26	-1.6
1,671,124	-		Psyr_1482	0.26	+1.1
1,671,124	-		Psyr_1482	0.26	+0.0
1,671,172	-		Psyr_1482	0.30	-1.2
1,671,172	-		Psyr_1482	0.30	+0.2
1,671,172	-		Psyr_1482	0.30	+0.2
1,671,229	+		Psyr_1482	0.34	+2.1
1,671,250	+		Psyr_1482	0.36	-0.6
1,671,251	-		Psyr_1482	0.36	-1.0
1,671,251	-		Psyr_1482	0.36	+1.5
1,671,258	-		Psyr_1482	0.37	+0.5
1,671,281	+		Psyr_1482	0.38	-1.0
1,671,282	-		Psyr_1482	0.39	+0.1
1,671,304	+		Psyr_1482	0.40	+0.2
1,671,304	+		Psyr_1482	0.40	+0.1
1,671,319	+		Psyr_1482	0.41	-1.5
1,671,319	+		Psyr_1482	0.41	+2.8
1,671,320	-		Psyr_1482	0.42	+0.2
1,671,374	-		Psyr_1482	0.46	+3.1
1,671,486	-		Psyr_1482	0.54	-1.0
1,671,508	+		Psyr_1482	0.56	-1.6
1,671,509	-		Psyr_1482	0.56	-1.9
1,671,557	+		Psyr_1482	0.60	+1.1
1,671,557	+		Psyr_1482	0.60	-1.4
1,671,557	+		Psyr_1482	0.60	-0.3
1,671,557	+		Psyr_1482	0.60	-1.5
1,671,558	-		Psyr_1482	0.60	+0.9
1,671,624	-		Psyr_1482	0.65	-1.0
1,671,671	-		Psyr_1482	0.69	-0.1
1,671,671	-		Psyr_1482	0.69	+0.7