Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1224

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,381,773	+		Psyr_1222	0.70	-0.9
1,381,773	+		Psyr_1222	0.70	+0.0
1,381,774	-		Psyr_1222	0.71	-1.1
1,381,774	-		Psyr_1222	0.71	+0.5
1,381,867	-				-0.5
1,381,921	+				-1.2
1,381,921	+				+1.5
1,381,922	-				+1.0
1,381,922	-				-1.2
1,381,923	+				+0.8
1,382,113	+		Psyr_1223	0.51	+0.4
1,382,249	-		Psyr_1223	0.89	-2.4
1,382,254	+				+1.3
1,382,254	+				+0.4
1,382,255	-				-3.3
1,382,255	-				-1.5
1,382,255	-				-0.6
1,382,372	-				-1.1
1,382,426	+				-1.2
1,382,427	-				+0.4
1,382,427	-				-1.8
1,382,469	+				+1.1
1,382,548	+				+2.9
1,382,548	+				-2.4
1,382,549	-				-0.8
1,382,574	+				-0.4
1,382,580	+				-0.1
1,382,580	+				-1.5
1,382,629	+		Psyr_1224	0.11	-0.8
1,382,632	+		Psyr_1224	0.11	+1.6
1,382,632	+		Psyr_1224	0.11	+2.5
1,382,664	+		Psyr_1224	0.14	+0.3
1,382,664	+		Psyr_1224	0.14	+0.2
1,382,701	+		Psyr_1224	0.17	+0.7
1,382,903	-		Psyr_1224	0.33	+2.4
1,382,923	+		Psyr_1224	0.34	+1.8
1,382,923	+		Psyr_1224	0.34	+0.1
1,382,923	+		Psyr_1224	0.34	-1.4
1,382,923	+		Psyr_1224	0.34	+1.2
1,382,924	-		Psyr_1224	0.35	-0.2
1,382,924	-		Psyr_1224	0.35	+0.5
1,382,924	-		Psyr_1224	0.35	+1.0
1,382,924	-		Psyr_1224	0.35	+1.3
1,382,924	-		Psyr_1224	0.35	-0.8
1,382,924	-		Psyr_1224	0.35	-0.0
1,382,924	-		Psyr_1224	0.35	+0.3
1,382,924	-		Psyr_1224	0.35	-0.2
1,382,924	-		Psyr_1224	0.35	+0.5
1,382,924	-		Psyr_1224	0.35	+1.0
1,382,926	-		Psyr_1224	0.35	+0.3
1,382,998	+		Psyr_1224	0.41	-1.1
1,382,998	+		Psyr_1224	0.41	+0.1
1,382,998	+		Psyr_1224	0.41	+1.4
1,382,998	+		Psyr_1224	0.41	-0.5
1,382,999	-		Psyr_1224	0.41	-3.1
1,382,999	-		Psyr_1224	0.41	-0.2
1,382,999	-		Psyr_1224	0.41	-3.1
1,382,999	-		Psyr_1224	0.41	-2.2
1,383,000	+		Psyr_1224	0.41	-0.9
1,383,001	-		Psyr_1224	0.41	+0.7
1,383,032	+		Psyr_1224	0.43	+0.1
1,383,045	+		Psyr_1224	0.44	-1.3
1,383,126	+		Psyr_1224	0.51	+0.1
1,383,153	+		Psyr_1224	0.53	-0.8
1,383,154	-		Psyr_1224	0.53	+0.4
1,383,204	+		Psyr_1224	0.57	-0.8
1,383,257	+		Psyr_1224	0.61	-1.9
1,383,273	+		Psyr_1224	0.63	+0.2
1,383,287	-		Psyr_1224	0.64	+0.9
1,383,330	+		Psyr_1224	0.67	-0.3
1,383,330	+		Psyr_1224	0.67	-2.1
1,383,330	+		Psyr_1224	0.67	-0.6
1,383,331	-		Psyr_1224	0.67	-0.3
1,383,331	-		Psyr_1224	0.67	-2.1
1,383,335	-		Psyr_1224	0.68	-2.6
1,383,335	-		Psyr_1224	0.68	-0.9
1,383,355	+		Psyr_1224	0.69	-0.7
1,383,355	+				+0.8
1,383,356	-		Psyr_1224	0.69	+0.7
1,383,356	-		Psyr_1224	0.69	+0.6
1,383,357	+		Psyr_1224	0.70	+1.7
1,383,357	+		Psyr_1224	0.70	+0.4
1,383,357	+		Psyr_1224	0.70	+0.8
1,383,357	+		Psyr_1224	0.70	-0.9
1,383,357	+		Psyr_1224	0.70	+0.2
1,383,357	+		Psyr_1224	0.70	+0.5
1,383,357	+		Psyr_1224	0.70	+0.5
1,383,358	-		Psyr_1224	0.70	-0.9
1,383,358	-		Psyr_1224	0.70	+0.6
1,383,358	-		Psyr_1224	0.70	+0.4
1,383,358	-		Psyr_1224	0.70	-0.5
1,383,358	-		Psyr_1224	0.70	-0.0
1,383,358	-		Psyr_1224	0.70	-0.1
1,383,358	-		Psyr_1224	0.70	-1.2
1,383,358	-		Psyr_1224	0.70	+0.3
1,383,396	+		Psyr_1224	0.73	+0.5
1,383,396	+		Psyr_1224	0.73	+0.8
1,383,396	+		Psyr_1224	0.73	+0.4
1,383,396	+		Psyr_1224	0.73	-2.1
1,383,396	+		Psyr_1224	0.73	-0.9
1,383,396	+		Psyr_1224	0.73	+1.3
1,383,396	+		Psyr_1224	0.73	-0.1
1,383,396	+		Psyr_1224	0.73	-1.7
1,383,396	+		Psyr_1224	0.73	-0.5
1,383,396	+		Psyr_1224	0.73	+1.5
1,383,396	+		Psyr_1224	0.73	+0.3
1,383,396	+		Psyr_1224	0.73	-0.8
1,383,396	+		Psyr_1224	0.73	+3.3
1,383,396	+		Psyr_1224	0.73	-0.8
1,383,396	+		Psyr_1224	0.73	+0.4
1,383,396	+		Psyr_1224	0.73	-1.0
1,383,396	+		Psyr_1224	0.73	-0.6
1,383,397	-		Psyr_1224	0.73	+1.9
1,383,397	-		Psyr_1224	0.73	+1.7
1,383,397	-		Psyr_1224	0.73	-1.3
1,383,397	-		Psyr_1224	0.73	+1.3
1,383,397	-		Psyr_1224	0.73	-0.1
1,383,397	-		Psyr_1224	0.73	-2.4
1,383,397	-		Psyr_1224	0.73	-2.0
1,383,397	-		Psyr_1224	0.73	+1.3
1,383,397	-		Psyr_1224	0.73	-1.6
1,383,397	-		Psyr_1224	0.73	-3.1
1,383,400	-		Psyr_1224	0.73	-0.4
1,383,400	-		Psyr_1224	0.73	+0.7
1,383,451	+		Psyr_1224	0.77	-0.2
1,383,495	+		Psyr_1224	0.81	+0.4
1,383,495	+		Psyr_1224	0.81	+1.3
1,383,496	-		Psyr_1224	0.81	+0.7
1,383,496	-		Psyr_1224	0.81	-1.3
1,383,530	+		Psyr_1224	0.84	-0.5
1,383,530	+		Psyr_1224	0.84	-0.3
1,383,530	+		Psyr_1224	0.84	-2.2
1,383,530	+		Psyr_1224	0.84	+0.2
1,383,531	-		Psyr_1224	0.84	-2.4
1,383,531	-		Psyr_1224	0.84	+0.0
1,383,531	-		Psyr_1224	0.84	+0.0
1,383,584	+		Psyr_1224	0.88	+1.2
1,383,584	+		Psyr_1224	0.88	-0.4
1,383,584	+		Psyr_1224	0.88	+0.1
1,383,584	+		Psyr_1224	0.88	+0.8
1,383,584	+		Psyr_1224	0.88	+0.1
1,383,584	+		Psyr_1224	0.88	+0.8
1,383,585	-		Psyr_1224	0.88	+1.4
1,383,585	-		Psyr_1224	0.88	+0.4
1,383,585	-		Psyr_1224	0.88	+0.0
1,383,585	-		Psyr_1224	0.88	-0.3
1,383,585	-		Psyr_1224	0.88	-0.7
1,383,585	-		Psyr_1224	0.88	+1.3
1,383,585	-		Psyr_1224	0.88	-0.2
1,383,585	-		Psyr_1224	0.88	-1.7
1,383,585	-		Psyr_1224	0.88	-0.5
1,383,654	+				-0.0
1,383,655	-				+2.1
1,383,655	-				+0.3
1,383,659	-				+0.3
1,383,726	+				+1.1
1,383,727	-				+0.5
1,383,727	-				+0.5
1,383,760	-				+0.9
1,383,816	+		Psyr_1225	0.19	+1.4
1,384,025	+		Psyr_1225	0.65	+0.9
1,384,025	+		Psyr_1225	0.65	+1.5
1,384,026	-		Psyr_1225	0.66	+1.5
1,384,048	+		Psyr_1225	0.70	+0.2
1,384,048	+		Psyr_1225	0.70	+0.6
1,384,048	+		Psyr_1225	0.70	+1.7
1,384,061	+		Psyr_1225	0.73	+1.4
1,384,061	+		Psyr_1225	0.73	-0.5
1,384,061	+		Psyr_1225	0.73	+2.3
1,384,062	-		Psyr_1225	0.74	+0.1
1,384,062	-		Psyr_1225	0.74	+1.3
1,384,186	+				+1.5
1,384,186	+				+1.5
1,384,186	+				+0.2
1,384,186	+				-2.2
1,384,186	+				+0.7
1,384,186	+				+0.8
1,384,186	+				+0.9
1,384,186	+				-2.7
1,384,186	+				-1.2
1,384,186	+				+0.7
1,384,187	-				-2.9
1,384,187	-				+1.0
1,384,187	-				-1.2
1,384,187	-				+1.7
1,384,187	-				-1.0
1,384,187	-				+0.1
1,384,187	-				+0.5
1,384,188	+				-0.1
1,384,188	+				+1.6
1,384,188	+				-0.0
1,384,188	+				+1.2
1,384,189	-				+0.2
1,384,189	-				-2.3
1,384,295	+				+0.6
1,384,295	+				+0.5
1,384,295	+				+0.8
1,384,295	+				-0.7
1,384,295	+				+0.9
1,384,295	+				+1.2
1,384,296	-				+0.1
1,384,296	-				+2.3
1,384,296	-				+1.0
1,384,296	-				-1.0
1,384,298	+				+0.3
1,384,299	-				+1.3
1,384,394	+				-0.2
1,384,395	-				+1.0
1,384,399	+				+0.8
1,384,400	-				+0.4
1,384,429	+				+0.7
1,384,430	-				-0.1
1,384,430	-				+0.4
1,384,430	-				-2.3
1,384,457	+				+0.2
1,384,482	+				+0.2
1,384,482	+				+0.1
1,384,601	-				+1.5
1,384,601	-				+0.2
1,384,601	-				+0.2