Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5476

Experiment: Cholin acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5476 and Pf1N1B4_5477 are separated by 90 nucleotides Pf1N1B4_5476 - hypothetical protein, at 227,952 to 228,143 _5476 Pf1N1B4_5477 - hypothetical protein, at 228,234 to 229,283 _5477 Position (kb) 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2at 227.017 kb on + strandat 227.017 kb on + strandat 227.017 kb on + strandat 227.017 kb on + strandat 227.018 kb on - strandat 227.018 kb on - strandat 227.018 kb on - strandat 227.018 kb on - strandat 227.018 kb on - strandat 227.018 kb on - strandat 227.018 kb on - strandat 227.018 kb on - strandat 227.018 kb on - strandat 227.018 kb on - strandat 227.072 kb on + strandat 227.072 kb on + strandat 227.193 kb on + strandat 227.281 kb on + strandat 227.281 kb on + strandat 227.282 kb on - strandat 227.282 kb on - strandat 227.336 kb on + strandat 227.336 kb on + strandat 227.336 kb on + strandat 227.336 kb on + strandat 227.336 kb on + strandat 227.337 kb on - strandat 227.343 kb on + strandat 227.344 kb on - strandat 227.344 kb on - strandat 227.422 kb on + strandat 227.422 kb on + strandat 227.422 kb on + strandat 227.423 kb on - strandat 227.423 kb on - strandat 227.423 kb on - strandat 227.433 kb on + strandat 227.433 kb on + strandat 227.433 kb on + strandat 227.434 kb on - strandat 227.434 kb on - strandat 227.491 kb on + strandat 227.491 kb on + strandat 227.491 kb on + strandat 227.509 kb on + strandat 227.509 kb on + strandat 227.550 kb on + strandat 227.550 kb on + strandat 227.550 kb on + strandat 227.550 kb on + strandat 227.626 kb on + strandat 227.626 kb on + strandat 227.626 kb on + strandat 227.626 kb on + strandat 227.627 kb on - strandat 227.627 kb on - strandat 227.627 kb on - strandat 227.627 kb on - strandat 227.631 kb on - strandat 227.659 kb on - strandat 227.694 kb on + strandat 227.695 kb on - strandat 227.776 kb on + strandat 227.776 kb on + strandat 227.777 kb on - strandat 227.777 kb on - strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.778 kb on + strandat 227.779 kb on - strandat 227.779 kb on - strandat 227.779 kb on - strandat 227.779 kb on - strandat 227.779 kb on - strandat 227.779 kb on - strandat 227.779 kb on - strandat 228.007 kb on + strand, within Pf1N1B4_5476at 228.007 kb on + strandat 228.007 kb on + strand, within Pf1N1B4_5476at 228.007 kb on + strand, within Pf1N1B4_5476at 228.008 kb on - strand, within Pf1N1B4_5476at 228.194 kb on + strandat 228.194 kb on + strandat 228.281 kb on + strandat 228.306 kb on + strandat 228.307 kb on - strandat 228.307 kb on - strandat 228.330 kb on + strandat 228.373 kb on + strand, within Pf1N1B4_5477at 228.374 kb on - strand, within Pf1N1B4_5477at 228.374 kb on - strand, within Pf1N1B4_5477at 228.374 kb on - strand, within Pf1N1B4_5477at 228.446 kb on - strand, within Pf1N1B4_5477at 228.479 kb on + strand, within Pf1N1B4_5477at 228.479 kb on + strand, within Pf1N1B4_5477at 228.479 kb on + strand, within Pf1N1B4_5477at 228.479 kb on + strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.480 kb on - strand, within Pf1N1B4_5477at 228.486 kb on + strand, within Pf1N1B4_5477at 228.487 kb on - strand, within Pf1N1B4_5477at 228.487 kb on - strand, within Pf1N1B4_5477at 228.487 kb on - strandat 228.487 kb on - strand, within Pf1N1B4_5477at 228.487 kb on - strand, within Pf1N1B4_5477at 228.487 kb on - strand, within Pf1N1B4_5477at 228.487 kb on - strand, within Pf1N1B4_5477at 228.498 kb on + strand, within Pf1N1B4_5477at 228.499 kb on - strand, within Pf1N1B4_5477at 228.499 kb on - strandat 228.499 kb on - strand, within Pf1N1B4_5477at 228.499 kb on - strand, within Pf1N1B4_5477at 228.499 kb on - strand, within Pf1N1B4_5477at 228.499 kb on - strandat 228.499 kb on - strand, within Pf1N1B4_5477at 228.499 kb on - strand, within Pf1N1B4_5477at 228.585 kb on - strand, within Pf1N1B4_5477at 228.729 kb on - strand, within Pf1N1B4_5477at 228.729 kb on - strand, within Pf1N1B4_5477at 228.752 kb on + strand, within Pf1N1B4_5477at 228.753 kb on - strandat 228.753 kb on - strand, within Pf1N1B4_5477at 228.781 kb on + strand, within Pf1N1B4_5477at 228.781 kb on + strandat 228.782 kb on - strand, within Pf1N1B4_5477at 228.782 kb on - strand, within Pf1N1B4_5477at 228.782 kb on - strand, within Pf1N1B4_5477at 228.794 kb on - strand, within Pf1N1B4_5477at 228.865 kb on - strand, within Pf1N1B4_5477at 228.865 kb on - strand, within Pf1N1B4_5477at 228.934 kb on + strand, within Pf1N1B4_5477at 228.934 kb on + strand, within Pf1N1B4_5477at 228.934 kb on + strand, within Pf1N1B4_5477at 228.934 kb on + strandat 228.935 kb on - strand, within Pf1N1B4_5477at 228.935 kb on - strand, within Pf1N1B4_5477at 228.935 kb on - strand, within Pf1N1B4_5477at 228.935 kb on - strand, within Pf1N1B4_5477at 229.017 kb on - strand, within Pf1N1B4_5477at 229.017 kb on - strand, within Pf1N1B4_5477at 229.084 kb on + strand, within Pf1N1B4_5477at 229.085 kb on - strand, within Pf1N1B4_5477at 229.085 kb on - strandat 229.085 kb on - strand, within Pf1N1B4_5477at 229.085 kb on - strand, within Pf1N1B4_5477at 229.085 kb on - strand, within Pf1N1B4_5477at 229.085 kb on - strand, within Pf1N1B4_5477

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 20 mM
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227,017 + -0.4
227,017 + +0.9
227,017 + -0.1
227,017 + +0.8
227,018 - -0.1
227,018 - +1.9
227,018 - -0.2
227,018 - -2.1
227,018 - +2.2
227,018 - -0.6
227,018 - -0.6
227,018 - +0.1
227,018 - +0.9
227,018 - -0.6
227,072 + +0.9
227,072 + +0.5
227,193 + -1.1
227,281 + +1.2
227,281 + -0.6
227,282 - +0.5
227,282 - +1.5
227,336 + +0.1
227,336 + -0.1
227,336 + -0.1
227,336 + +0.1
227,336 + +0.7
227,337 - +1.4
227,343 + -0.1
227,344 - -1.4
227,344 - +1.5
227,422 + +0.7
227,422 + +1.4
227,422 + +0.9
227,423 - +1.9
227,423 - +1.4
227,423 - -0.4
227,433 + -0.1
227,433 + -0.2
227,433 + +0.0
227,434 - -0.6
227,434 - -1.6
227,491 + -0.8
227,491 + +0.3
227,491 + -1.4
227,509 + -0.4
227,509 + -0.9
227,550 + -1.1
227,550 + +0.4
227,550 + -0.1
227,550 + -0.3
227,626 + +0.7
227,626 + -0.3
227,626 + -0.5
227,626 + +0.1
227,627 - -0.4
227,627 - +0.5
227,627 - +0.6
227,627 - -0.4
227,631 - +1.4
227,659 - +0.7
227,694 + -0.3
227,695 - -0.1
227,776 + -0.1
227,776 + -0.2
227,777 - -0.0
227,777 - +1.9
227,778 + -0.3
227,778 + +0.5
227,778 + -0.4
227,778 + -0.1
227,778 + +0.9
227,778 + -0.2
227,778 + -0.1
227,778 + +0.4
227,778 + +1.9
227,778 + +1.5
227,778 + +0.6
227,778 + +0.0
227,779 - -1.4
227,779 - +0.6
227,779 - -0.2
227,779 - +0.5
227,779 - -0.5
227,779 - +0.7
227,779 - -0.4
228,007 + Pf1N1B4_5476 0.29 -0.1
228,007 + +0.5
228,007 + Pf1N1B4_5476 0.29 -1.9
228,007 + Pf1N1B4_5476 0.29 -0.5
228,008 - Pf1N1B4_5476 0.29 +0.5
228,194 + +0.5
228,194 + +0.6
228,281 + +0.9
228,306 + -2.1
228,307 - -0.8
228,307 - -1.1
228,330 + +2.3
228,373 + Pf1N1B4_5477 0.13 -1.4
228,374 - Pf1N1B4_5477 0.13 +0.7
228,374 - Pf1N1B4_5477 0.13 -1.4
228,374 - Pf1N1B4_5477 0.13 +0.4
228,446 - Pf1N1B4_5477 0.20 +1.9
228,479 + Pf1N1B4_5477 0.23 +0.4
228,479 + Pf1N1B4_5477 0.23 -1.6
228,479 + Pf1N1B4_5477 0.23 +1.5
228,479 + Pf1N1B4_5477 0.23 +0.5
228,480 - Pf1N1B4_5477 0.23 +0.2
228,480 - Pf1N1B4_5477 0.23 +0.6
228,480 - Pf1N1B4_5477 0.23 -0.1
228,480 - Pf1N1B4_5477 0.23 -0.5
228,480 - Pf1N1B4_5477 0.23 +1.3
228,480 - Pf1N1B4_5477 0.23 -0.2
228,480 - Pf1N1B4_5477 0.23 -0.6
228,480 - Pf1N1B4_5477 0.23 +0.2
228,480 - Pf1N1B4_5477 0.23 -0.4
228,480 - Pf1N1B4_5477 0.23 -0.6
228,480 - Pf1N1B4_5477 0.23 +0.5
228,480 - Pf1N1B4_5477 0.23 +0.3
228,480 - Pf1N1B4_5477 0.23 -1.9
228,480 - Pf1N1B4_5477 0.23 -0.2
228,486 + Pf1N1B4_5477 0.24 +0.1
228,487 - Pf1N1B4_5477 0.24 +0.5
228,487 - Pf1N1B4_5477 0.24 +0.5
228,487 - +0.9
228,487 - Pf1N1B4_5477 0.24 -1.8
228,487 - Pf1N1B4_5477 0.24 -0.4
228,487 - Pf1N1B4_5477 0.24 -0.4
228,487 - Pf1N1B4_5477 0.24 +1.9
228,498 + Pf1N1B4_5477 0.25 -0.3
228,499 - Pf1N1B4_5477 0.25 -1.1
228,499 - -0.1
228,499 - Pf1N1B4_5477 0.25 -0.1
228,499 - Pf1N1B4_5477 0.25 -0.1
228,499 - Pf1N1B4_5477 0.25 -0.2
228,499 - -1.1
228,499 - Pf1N1B4_5477 0.25 +0.5
228,499 - Pf1N1B4_5477 0.25 -1.1
228,585 - Pf1N1B4_5477 0.33 -0.5
228,729 - Pf1N1B4_5477 0.47 +0.7
228,729 - Pf1N1B4_5477 0.47 -0.4
228,752 + Pf1N1B4_5477 0.49 -1.1
228,753 - -1.6
228,753 - Pf1N1B4_5477 0.49 +1.5
228,781 + Pf1N1B4_5477 0.52 -1.6
228,781 + -0.1
228,782 - Pf1N1B4_5477 0.52 -0.1
228,782 - Pf1N1B4_5477 0.52 +0.4
228,782 - Pf1N1B4_5477 0.52 -0.1
228,794 - Pf1N1B4_5477 0.53 +0.2
228,865 - Pf1N1B4_5477 0.60 +1.3
228,865 - Pf1N1B4_5477 0.60 -0.1
228,934 + Pf1N1B4_5477 0.67 +1.4
228,934 + Pf1N1B4_5477 0.67 +1.3
228,934 + Pf1N1B4_5477 0.67 -1.1
228,934 + +0.4
228,935 - Pf1N1B4_5477 0.67 +0.6
228,935 - Pf1N1B4_5477 0.67 -0.6
228,935 - Pf1N1B4_5477 0.67 +0.4
228,935 - Pf1N1B4_5477 0.67 -2.1
229,017 - Pf1N1B4_5477 0.75 -0.4
229,017 - Pf1N1B4_5477 0.75 +1.4
229,084 + Pf1N1B4_5477 0.81 +0.2
229,085 - Pf1N1B4_5477 0.81 -0.4
229,085 - -0.6
229,085 - Pf1N1B4_5477 0.81 -0.1
229,085 - Pf1N1B4_5477 0.81 +1.4
229,085 - Pf1N1B4_5477 0.81 -1.6
229,085 - Pf1N1B4_5477 0.81 -0.6

Or see this region's nucleotide sequence