Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08660

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08655 and MMP_RS08660 are separated by 49 nucleotidesMMP_RS08660 and MMP_RS08665 are separated by 132 nucleotidesMMP_RS08665 and MMP_RS08670 are separated by 0 nucleotides MMP_RS08655: MMP_RS08655 - phosphoadenosine phosphosulfate reductase family protein, at 1,622,934 to 1,624,220 _RS08655 MMP_RS08660: MMP_RS08660 - DHH family phosphoesterase, at 1,624,270 to 1,625,673 _RS08660 MMP_RS08665: MMP_RS08665 - hypothetical protein, at 1,625,806 to 1,626,447 _RS08665 MMP_RS08670: MMP_RS08670 - metallophosphoesterase, at 1,626,448 to 1,627,131 _RS08670 Position (kb) 1624 1625 1626Strain fitness (log2 ratio) -2 -1 0 1at 1623.495 kb on - strand, within MMP_RS08655at 1623.603 kb on + strand, within MMP_RS08655at 1623.752 kb on - strand, within MMP_RS08655at 1623.752 kb on - strand, within MMP_RS08655at 1623.753 kb on + strand, within MMP_RS08655at 1623.753 kb on + strand, within MMP_RS08655at 1623.753 kb on + strand, within MMP_RS08655at 1623.753 kb on + strand, within MMP_RS08655at 1623.753 kb on + strand, within MMP_RS08655at 1624.002 kb on + strand, within MMP_RS08655at 1624.003 kb on - strand, within MMP_RS08655at 1624.004 kb on + strand, within MMP_RS08655at 1624.004 kb on + strand, within MMP_RS08655at 1624.004 kb on + strand, within MMP_RS08655at 1624.170 kb on - strandat 1624.171 kb on + strandat 1624.180 kb on + strandat 1624.180 kb on + strandat 1624.221 kb on + strandat 1624.251 kb on + strandat 1624.251 kb on + strandat 1624.290 kb on + strandat 1624.320 kb on + strandat 1624.570 kb on + strand, within MMP_RS08660at 1624.570 kb on + strand, within MMP_RS08660at 1624.753 kb on + strand, within MMP_RS08660at 1624.846 kb on - strand, within MMP_RS08660at 1624.867 kb on + strand, within MMP_RS08660at 1624.869 kb on + strand, within MMP_RS08660at 1624.937 kb on - strand, within MMP_RS08660at 1624.984 kb on - strand, within MMP_RS08660at 1624.986 kb on - strand, within MMP_RS08660at 1624.987 kb on + strand, within MMP_RS08660at 1624.993 kb on + strand, within MMP_RS08660at 1625.042 kb on - strand, within MMP_RS08660at 1625.049 kb on - strand, within MMP_RS08660at 1625.050 kb on + strand, within MMP_RS08660at 1625.070 kb on - strand, within MMP_RS08660at 1625.070 kb on - strand, within MMP_RS08660at 1625.140 kb on - strand, within MMP_RS08660at 1625.326 kb on - strand, within MMP_RS08660at 1625.327 kb on + strand, within MMP_RS08660at 1625.453 kb on + strand, within MMP_RS08660at 1625.459 kb on + strand, within MMP_RS08660at 1625.467 kb on + strand, within MMP_RS08660at 1625.533 kb on + strandat 1625.575 kb on - strandat 1625.608 kb on - strandat 1625.632 kb on + strandat 1625.699 kb on - strandat 1625.746 kb on + strandat 1625.747 kb on - strandat 1625.748 kb on + strandat 1625.762 kb on + strandat 1625.763 kb on - strandat 1625.764 kb on + strandat 1625.764 kb on + strandat 1625.765 kb on - strandat 1625.765 kb on - strandat 1625.766 kb on + strandat 1625.802 kb on + strandat 1625.806 kb on + strandat 1625.846 kb on - strandat 1625.849 kb on - strandat 1625.849 kb on - strandat 1625.850 kb on + strandat 1625.850 kb on + strandat 1625.858 kb on - strandat 1625.890 kb on - strand, within MMP_RS08665at 1625.917 kb on + strand, within MMP_RS08665at 1625.922 kb on - strand, within MMP_RS08665at 1625.925 kb on - strand, within MMP_RS08665at 1625.925 kb on - strand, within MMP_RS08665at 1625.929 kb on - strand, within MMP_RS08665at 1625.929 kb on - strand, within MMP_RS08665at 1625.929 kb on - strand, within MMP_RS08665at 1625.929 kb on - strand, within MMP_RS08665at 1625.930 kb on + strand, within MMP_RS08665at 1625.930 kb on + strand, within MMP_RS08665at 1625.930 kb on + strand, within MMP_RS08665at 1625.933 kb on - strand, within MMP_RS08665at 1625.934 kb on + strand, within MMP_RS08665at 1625.976 kb on - strand, within MMP_RS08665at 1626.000 kb on + strand, within MMP_RS08665at 1626.050 kb on - strand, within MMP_RS08665at 1626.050 kb on - strand, within MMP_RS08665at 1626.051 kb on + strand, within MMP_RS08665at 1626.054 kb on - strand, within MMP_RS08665at 1626.103 kb on - strand, within MMP_RS08665at 1626.104 kb on + strand, within MMP_RS08665at 1626.106 kb on + strand, within MMP_RS08665at 1626.106 kb on + strand, within MMP_RS08665at 1626.120 kb on + strand, within MMP_RS08665at 1626.150 kb on + strand, within MMP_RS08665at 1626.152 kb on - strand, within MMP_RS08665at 1626.152 kb on - strand, within MMP_RS08665at 1626.155 kb on + strand, within MMP_RS08665at 1626.155 kb on + strand, within MMP_RS08665at 1626.155 kb on + strand, within MMP_RS08665at 1626.156 kb on - strand, within MMP_RS08665at 1626.157 kb on + strand, within MMP_RS08665at 1626.189 kb on - strand, within MMP_RS08665at 1626.211 kb on + strand, within MMP_RS08665at 1626.306 kb on + strand, within MMP_RS08665at 1626.314 kb on - strand, within MMP_RS08665at 1626.314 kb on - strand, within MMP_RS08665at 1626.314 kb on - strand, within MMP_RS08665at 1626.342 kb on + strand, within MMP_RS08665at 1626.365 kb on - strand, within MMP_RS08665at 1626.483 kb on - strandat 1626.488 kb on - strandat 1626.489 kb on + strandat 1626.489 kb on + strandat 1626.490 kb on - strandat 1626.491 kb on + strandat 1626.492 kb on - strandat 1626.518 kb on + strand, within MMP_RS08670at 1626.518 kb on + strand, within MMP_RS08670at 1626.529 kb on + strand, within MMP_RS08670at 1626.546 kb on - strand, within MMP_RS08670at 1626.592 kb on + strand, within MMP_RS08670at 1626.661 kb on + strand, within MMP_RS08670

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
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1,623,495 - MMP_RS08655 0.44 -0.2
1,623,603 + MMP_RS08655 0.52 +0.0
1,623,752 - MMP_RS08655 0.64 +0.1
1,623,752 - MMP_RS08655 0.64 -0.2
1,623,753 + MMP_RS08655 0.64 +0.2
1,623,753 + MMP_RS08655 0.64 -0.4
1,623,753 + MMP_RS08655 0.64 +0.2
1,623,753 + MMP_RS08655 0.64 -0.2
1,623,753 + MMP_RS08655 0.64 +0.0
1,624,002 + MMP_RS08655 0.83 -0.5
1,624,003 - MMP_RS08655 0.83 -1.1
1,624,004 + MMP_RS08655 0.83 -0.0
1,624,004 + MMP_RS08655 0.83 -0.1
1,624,004 + MMP_RS08655 0.83 -0.3
1,624,170 - -0.3
1,624,171 + +0.1
1,624,180 + +0.0
1,624,180 + +0.2
1,624,221 + -0.4
1,624,251 + +0.3
1,624,251 + +0.0
1,624,290 + -0.1
1,624,320 + -1.0
1,624,570 + MMP_RS08660 0.21 -1.3
1,624,570 + MMP_RS08660 0.21 -1.0
1,624,753 + MMP_RS08660 0.34 -0.8
1,624,846 - MMP_RS08660 0.41 +0.1
1,624,867 + MMP_RS08660 0.43 -0.4
1,624,869 + MMP_RS08660 0.43 -1.8
1,624,937 - MMP_RS08660 0.48 -1.3
1,624,984 - MMP_RS08660 0.51 -1.2
1,624,986 - MMP_RS08660 0.51 -1.7
1,624,987 + MMP_RS08660 0.51 -1.2
1,624,993 + MMP_RS08660 0.51 +0.0
1,625,042 - MMP_RS08660 0.55 -0.9
1,625,049 - MMP_RS08660 0.55 -1.8
1,625,050 + MMP_RS08660 0.56 -0.7
1,625,070 - MMP_RS08660 0.57 -0.9
1,625,070 - MMP_RS08660 0.57 +0.6
1,625,140 - MMP_RS08660 0.62 -0.9
1,625,326 - MMP_RS08660 0.75 -0.1
1,625,327 + MMP_RS08660 0.75 +0.4
1,625,453 + MMP_RS08660 0.84 -2.0
1,625,459 + MMP_RS08660 0.85 -1.7
1,625,467 + MMP_RS08660 0.85 -1.6
1,625,533 + +0.0
1,625,575 - -1.3
1,625,608 - -1.1
1,625,632 + -1.1
1,625,699 - +0.4
1,625,746 + +0.1
1,625,747 - +0.1
1,625,748 + +0.4
1,625,762 + +0.6
1,625,763 - -0.3
1,625,764 + +0.4
1,625,764 + -0.4
1,625,765 - +0.3
1,625,765 - -0.3
1,625,766 + +0.1
1,625,802 + +0.1
1,625,806 + +0.6
1,625,846 - -0.2
1,625,849 - -0.0
1,625,849 - -0.2
1,625,850 + +0.2
1,625,850 + +0.3
1,625,858 - -0.0
1,625,890 - MMP_RS08665 0.13 -0.4
1,625,917 + MMP_RS08665 0.17 -0.3
1,625,922 - MMP_RS08665 0.18 +0.7
1,625,925 - MMP_RS08665 0.19 +0.0
1,625,925 - MMP_RS08665 0.19 +0.3
1,625,929 - MMP_RS08665 0.19 +0.1
1,625,929 - MMP_RS08665 0.19 +0.2
1,625,929 - MMP_RS08665 0.19 -0.2
1,625,929 - MMP_RS08665 0.19 +0.0
1,625,930 + MMP_RS08665 0.19 -0.2
1,625,930 + MMP_RS08665 0.19 +0.3
1,625,930 + MMP_RS08665 0.19 -0.4
1,625,933 - MMP_RS08665 0.20 +0.2
1,625,934 + MMP_RS08665 0.20 +0.3
1,625,976 - MMP_RS08665 0.26 +0.0
1,626,000 + MMP_RS08665 0.30 +0.6
1,626,050 - MMP_RS08665 0.38 +0.1
1,626,050 - MMP_RS08665 0.38 +0.4
1,626,051 + MMP_RS08665 0.38 -0.1
1,626,054 - MMP_RS08665 0.39 +0.4
1,626,103 - MMP_RS08665 0.46 -0.1
1,626,104 + MMP_RS08665 0.46 -0.2
1,626,106 + MMP_RS08665 0.47 +0.3
1,626,106 + MMP_RS08665 0.47 +0.4
1,626,120 + MMP_RS08665 0.49 +0.5
1,626,150 + MMP_RS08665 0.54 +0.4
1,626,152 - MMP_RS08665 0.54 +0.1
1,626,152 - MMP_RS08665 0.54 +0.2
1,626,155 + MMP_RS08665 0.54 +0.5
1,626,155 + MMP_RS08665 0.54 -0.0
1,626,155 + MMP_RS08665 0.54 -0.4
1,626,156 - MMP_RS08665 0.55 +0.3
1,626,157 + MMP_RS08665 0.55 +0.5
1,626,189 - MMP_RS08665 0.60 +0.0
1,626,211 + MMP_RS08665 0.63 +0.3
1,626,306 + MMP_RS08665 0.78 +0.6
1,626,314 - MMP_RS08665 0.79 +0.1
1,626,314 - MMP_RS08665 0.79 +0.2
1,626,314 - MMP_RS08665 0.79 -0.2
1,626,342 + MMP_RS08665 0.83 +0.0
1,626,365 - MMP_RS08665 0.87 +0.3
1,626,483 - -0.1
1,626,488 - -0.2
1,626,489 + +0.0
1,626,489 + +0.2
1,626,490 - -0.5
1,626,491 + -0.4
1,626,492 - -0.5
1,626,518 + MMP_RS08670 0.10 -0.1
1,626,518 + MMP_RS08670 0.10 -0.3
1,626,529 + MMP_RS08670 0.12 -1.2
1,626,546 - MMP_RS08670 0.14 -0.3
1,626,592 + MMP_RS08670 0.21 -0.3
1,626,661 + MMP_RS08670 0.31 -0.2

Or see this region's nucleotide sequence