Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00155

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00150 and MMP_RS00155 are separated by 53 nucleotidesMMP_RS00155 and MMP_RS00160 are separated by 67 nucleotides MMP_RS00150: MMP_RS00150 - AAA family ATPase, at 31,747 to 32,862 _RS00150 MMP_RS00155: MMP_RS00155 - heavy metal-binding domain-containing protein, at 32,916 to 33,188 _RS00155 MMP_RS00160: MMP_RS00160 - DNA polymerase II large subunit, at 33,256 to 36,651 _RS00160 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1 2 3at 32.007 kb on - strand, within MMP_RS00150at 32.061 kb on + strand, within MMP_RS00150at 32.065 kb on + strand, within MMP_RS00150at 32.176 kb on - strand, within MMP_RS00150at 32.225 kb on - strand, within MMP_RS00150at 32.304 kb on + strand, within MMP_RS00150at 32.304 kb on + strand, within MMP_RS00150at 32.304 kb on + strand, within MMP_RS00150at 32.402 kb on - strand, within MMP_RS00150at 32.474 kb on - strand, within MMP_RS00150at 32.475 kb on + strand, within MMP_RS00150at 32.860 kb on - strandat 32.909 kb on - strandat 32.918 kb on + strandat 32.947 kb on - strand, within MMP_RS00155at 32.953 kb on - strand, within MMP_RS00155at 33.015 kb on - strand, within MMP_RS00155at 33.016 kb on + strand, within MMP_RS00155at 33.016 kb on + strand, within MMP_RS00155at 33.016 kb on + strand, within MMP_RS00155at 33.217 kb on - strandat 33.231 kb on + strandat 33.232 kb on - strandat 33.232 kb on - strandat 33.233 kb on + strandat 33.233 kb on + strandat 33.233 kb on + strandat 33.234 kb on - strandat 33.235 kb on + strandat 33.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
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32,007 - MMP_RS00150 0.23 -0.3
32,061 + MMP_RS00150 0.28 -0.5
32,065 + MMP_RS00150 0.28 -0.4
32,176 - MMP_RS00150 0.38 +0.4
32,225 - MMP_RS00150 0.43 -0.1
32,304 + MMP_RS00150 0.50 -0.1
32,304 + MMP_RS00150 0.50 -0.4
32,304 + MMP_RS00150 0.50 +0.2
32,402 - MMP_RS00150 0.59 -0.0
32,474 - MMP_RS00150 0.65 +3.5
32,475 + MMP_RS00150 0.65 +0.3
32,860 - +0.1
32,909 - -0.2
32,918 + +0.4
32,947 - MMP_RS00155 0.11 -1.2
32,953 - MMP_RS00155 0.14 -1.5
33,015 - MMP_RS00155 0.36 -0.8
33,016 + MMP_RS00155 0.37 -0.5
33,016 + MMP_RS00155 0.37 -0.9
33,016 + MMP_RS00155 0.37 -1.1
33,217 - -0.8
33,231 + -0.7
33,232 - -1.1
33,232 - -0.7
33,233 + -0.8
33,233 + -0.8
33,233 + -0.7
33,234 - -0.3
33,235 + -0.8
33,666 - -0.9

Or see this region's nucleotide sequence