Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01997

Experiment: PYE with nitrite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01995 and CCNA_01996 overlap by 41 nucleotidesCCNA_01996 and CCNA_01997 are separated by 51 nucleotidesCCNA_01997 and CCNA_01998 are separated by 26 nucleotidesCCNA_01998 and CCNA_01999 are separated by 177 nucleotides CCNA_01995: CCNA_01995 - phosphatidate cytidylyltransferase, at 2,142,103 to 2,142,948 _01995 CCNA_01996: CCNA_01996 - undecaprenyl pyrophosphate synthetase, at 2,142,908 to 2,143,687 _01996 CCNA_01997: CCNA_01997 - ribosome recycling factor (RRF), at 2,143,739 to 2,144,305 _01997 CCNA_01998: CCNA_01998 - uridylate kinase, at 2,144,332 to 2,145,072 _01998 CCNA_01999: CCNA_01999 - translation elongation factor Ts (EF-Ts), at 2,145,250 to 2,146,188 _01999 Position (kb) 2143 2144 2145Strain fitness (log2 ratio) -1 0 1 2 3at 2142.904 kb on - strandat 2143.710 kb on - strandat 2143.737 kb on + strandat 2144.324 kb on - strandat 2144.362 kb on - strandat 2145.104 kb on + strandat 2145.117 kb on + strandat 2145.248 kb on + strandat 2145.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 1.25 mM
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2,142,904 - +1.3
2,143,710 - +1.6
2,143,737 + -0.1
2,144,324 - +2.0
2,144,362 - +1.8
2,145,104 + +0.0
2,145,117 + +0.5
2,145,248 + +1.2
2,145,256 - +2.8

Or see this region's nucleotide sequence