Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01050

Experiment: PYE with nitrite 1.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 1.25 mM
1,145,283	+		CCNA_01048	0.67	-0.9
1,145,340	-		CCNA_01048	0.89	-0.3
1,145,340	-		CCNA_01048	0.89	-1.3
1,145,340	-		CCNA_01048	0.89	-1.9
1,145,351	-				+0.3
1,145,364	-				+1.2
1,145,371	-				-1.1
1,145,395	-				-1.1
1,145,401	+				+2.0
1,145,411	+				-1.1
1,145,416	+				-0.3
1,145,450	+				-1.0
1,145,506	-		CCNA_03945	0.34	+0.2
1,145,518	-		CCNA_03945	0.42	-1.4
1,145,530	-		CCNA_03945	0.50	-2.3
1,145,547	-		CCNA_03945	0.61	+0.9
1,145,562	+		CCNA_03945	0.71	+1.3
1,145,570	-		CCNA_03945	0.76	-1.6
1,145,589	-		CCNA_03945	0.88	-0.6
1,145,589	-		CCNA_03945	0.88	-0.4
1,145,589	-		CCNA_03945	0.88	-1.4
1,145,612	-				+0.7
1,145,656	+				-1.6
1,145,664	-				-0.5
1,145,664	-				-0.6
1,145,669	-				-1.9
1,145,669	-				-0.7
1,145,674	+				-0.6
1,145,680	+				-0.6
1,145,688	-				-2.9
1,145,713	+				+0.3
1,145,722	-		CCNA_01049	0.10	+0.6
1,145,772	-		CCNA_01049	0.21	+0.1
1,145,809	+		CCNA_01049	0.28	-0.3
1,145,823	+		CCNA_01049	0.31	-1.2
1,145,826	-		CCNA_01049	0.32	-0.9
1,145,827	-		CCNA_01049	0.32	+1.0
1,145,831	-		CCNA_01049	0.33	-1.4
1,145,871	+		CCNA_01049	0.41	+0.4
1,145,871	+		CCNA_01049	0.41	-2.6
1,145,879	-		CCNA_01049	0.43	-0.2
1,145,891	+		CCNA_01049	0.45	-0.0
1,145,909	+		CCNA_01049	0.49	+0.7
1,145,939	+		CCNA_01049	0.55	-0.9
1,145,939	+		CCNA_01049	0.55	+1.0
1,145,939	+		CCNA_01049	0.55	-1.4
1,145,947	-		CCNA_01049	0.57	+0.2
1,145,949	-		CCNA_01049	0.57	-0.3
1,145,951	-		CCNA_01049	0.58	-0.9
1,145,961	-		CCNA_01049	0.60	-0.9
1,146,008	+		CCNA_01049	0.70	+0.0
1,146,008	-		CCNA_01049	0.70	+0.4
1,146,073	+		CCNA_01049	0.83	+0.8
1,146,127	+				-2.0
1,146,192	+				+0.4
1,146,193	-				-1.4
1,146,193	-				-1.2
1,146,224	+				+0.2
1,146,267	+				-0.1
1,146,277	+				+1.7
1,146,280	+				-0.2
1,146,348	-				+0.4
1,146,360	-				+0.2
1,146,362	-				+1.3
1,146,378	+				+0.6
1,146,397	+				+0.4
1,146,401	+				-0.7
1,146,405	-				+0.7
1,146,428	+				-0.1
1,146,428	+				+0.8
1,146,433	+				+0.0
1,146,436	-				-2.1
1,146,449	+		CCNA_01050	0.10	+0.6
1,146,545	+		CCNA_01050	0.16	+0.3
1,146,605	+		CCNA_01050	0.20	+0.1
1,146,605	+		CCNA_01050	0.20	-0.3
1,146,605	+		CCNA_01050	0.20	+0.7
1,146,613	-		CCNA_01050	0.20	-1.7
1,146,627	-		CCNA_01050	0.21	+1.6
1,146,632	+		CCNA_01050	0.21	+0.7
1,146,642	-		CCNA_01050	0.22	-0.2
1,146,642	-		CCNA_01050	0.22	+0.2
1,146,642	-		CCNA_01050	0.22	+0.3
1,146,663	-		CCNA_01050	0.23	+0.9
1,146,665	+		CCNA_01050	0.23	-0.2
1,146,676	-		CCNA_01050	0.24	-0.3
1,146,691	-		CCNA_01050	0.25	-1.2
1,146,712	+		CCNA_01050	0.26	+0.2
1,146,712	+		CCNA_01050	0.26	-0.3
1,146,728	+		CCNA_01050	0.27	+0.4
1,146,731	-		CCNA_01050	0.28	-0.8
1,146,734	+		CCNA_01050	0.28	+0.3
1,146,765	+		CCNA_01050	0.30	+1.3
1,146,765	+		CCNA_01050	0.30	-0.2
1,146,765	+		CCNA_01050	0.30	+0.8
1,146,765	+		CCNA_01050	0.30	+0.0
1,146,765	+		CCNA_01050	0.30	-0.3
1,146,773	-		CCNA_01050	0.30	-1.4
1,146,773	-		CCNA_01050	0.30	-1.0
1,146,784	-		CCNA_01050	0.31	-1.1
1,146,784	-		CCNA_01050	0.31	+0.3
1,146,793	+		CCNA_01050	0.31	-0.8
1,146,793	+		CCNA_01050	0.31	-1.0
1,146,793	+		CCNA_01050	0.31	+0.3
1,146,793	+		CCNA_01050	0.31	-0.3
1,146,801	-		CCNA_01050	0.32	-2.4
1,146,801	-		CCNA_01050	0.32	+0.0
1,146,878	+		CCNA_01050	0.37	-1.4
1,146,878	+		CCNA_01050	0.37	-0.3
1,146,878	+		CCNA_01050	0.37	-0.3
1,146,886	-		CCNA_01050	0.37	-1.1
1,146,908	+		CCNA_01050	0.38	+0.8
1,146,915	+		CCNA_01050	0.39	-0.3
1,146,921	-		CCNA_01050	0.39	-0.9
1,146,921	-		CCNA_01050	0.39	-0.4
1,146,923	-		CCNA_01050	0.39	-1.1
1,146,964	+		CCNA_01050	0.42	+1.4
1,147,015	-		CCNA_01050	0.45	+0.4
1,147,053	-		CCNA_01050	0.47	-0.1
1,147,113	+		CCNA_01050	0.51	-1.4
1,147,113	-		CCNA_01050	0.51	+0.9
1,147,121	-		CCNA_01050	0.51	-1.8
1,147,121	-		CCNA_01050	0.51	-0.4
1,147,144	+		CCNA_01050	0.53	-1.0
1,147,144	+		CCNA_01050	0.53	+0.1
1,147,144	-		CCNA_01050	0.53	-2.4
1,147,152	-		CCNA_01050	0.53	-2.8
1,147,152	-		CCNA_01050	0.53	-0.5
1,147,157	-		CCNA_01050	0.54	+1.4
1,147,173	+		CCNA_01050	0.55	+0.3
1,147,215	-		CCNA_01050	0.57	-2.6
1,147,218	-		CCNA_01050	0.57	-1.0
1,147,278	+		CCNA_01050	0.61	-2.3
1,147,278	+		CCNA_01050	0.61	+0.6
1,147,278	+		CCNA_01050	0.61	-1.7
1,147,288	-		CCNA_01050	0.62	-1.7
1,147,301	+		CCNA_01050	0.62	-0.2
1,147,343	-		CCNA_01050	0.65	+1.0
1,147,367	-		CCNA_01050	0.67	-1.0
1,147,414	-		CCNA_01050	0.69	-2.6
1,147,414	-		CCNA_01050	0.69	-1.0
1,147,414	-		CCNA_01050	0.69	+0.2
1,147,428	+		CCNA_01050	0.70	-0.3
1,147,439	+		CCNA_01050	0.71	-1.3
1,147,472	-		CCNA_01050	0.73	+0.8
1,147,472	-		CCNA_01050	0.73	-0.4
1,147,472	-		CCNA_01050	0.73	+0.1
1,147,497	-		CCNA_01050	0.75	-2.5
1,147,542	-		CCNA_01050	0.77	+0.0
1,147,596	+		CCNA_01050	0.81	+0.3
1,147,596	+		CCNA_01050	0.81	+0.2
1,147,596	+		CCNA_01050	0.81	+0.2
1,147,604	-		CCNA_01050	0.81	-0.2
1,147,627	-		CCNA_01050	0.83	-0.3
1,147,635	+		CCNA_01050	0.83	-0.2
1,147,647	+		CCNA_01050	0.84	+1.3
1,147,675	+		CCNA_01050	0.85	-0.6
1,147,710	+		CCNA_01050	0.88	-0.4
1,147,716	+		CCNA_01050	0.88	+0.8
1,147,766	+				-0.6
1,147,805	-				-1.8
1,147,807	+				+0.6
1,147,894	-				-2.1
1,147,906	+				+0.3
1,147,916	+				+1.0
1,147,916	-				+0.9
1,147,924	-				-2.2
1,147,924	-				-0.4
1,147,933	-				+1.0
1,147,958	-				-0.6
1,147,966	-				+0.3
1,148,003	+				-1.9
1,148,012	-				-0.7
1,148,088	+				+0.7
1,148,298	+				-0.4
1,148,388	+				+0.3
1,148,543	+				-0.7
1,148,642	+				-1.0
1,148,649	+				-0.0
1,148,663	+				-1.4
1,148,663	+				+0.1
1,148,671	-		CCNA_01051	0.10	+0.7
1,148,681	+		CCNA_01051	0.10	+0.2
1,148,691	-		CCNA_01051	0.11	+0.5
1,148,697	+		CCNA_01051	0.11	-1.5
1,148,833	+		CCNA_01051	0.15	-0.5
1,148,833	+		CCNA_01051	0.15	-0.2
1,148,833	+		CCNA_01051	0.15	-2.6
1,148,841	-		CCNA_01051	0.16	-0.0
1,148,841	-		CCNA_01051	0.16	-0.9
1,148,855	+		CCNA_01051	0.16	-0.7
1,148,876	-		CCNA_01051	0.17	-1.1
1,148,887	-		CCNA_01051	0.17	+2.3
1,148,895	-		CCNA_01051	0.17	-2.8