Experiment: PYE with nitrite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00832 and CCNA_00833 are separated by 138 nucleotides CCNA_00833 and CCNA_03942 are separated by 136 nucleotides CCNA_03942 and CCNA_00834 are separated by 171 nucleotides
CCNA_00832: CCNA_00832 - LysR-family transcriptional regulator, at 897,582 to 898,481
_00832
CCNA_00833: CCNA_00833 - NAD(P)H:quinone oxidoreductase, at 898,620 to 899,219
_00833
CCNA_03942: CCNA_03942 - hypothetical protein, at 899,356 to 899,490
_03942
CCNA_00834: CCNA_00834 - flagellin FljM, at 899,662 to 900,483
_00834
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 897.646 kb on - strand at 897.648 kb on + strand at 897.656 kb on - strand at 897.656 kb on - strand at 897.670 kb on - strand at 897.675 kb on - strand, within CCNA_00832 at 897.691 kb on + strand, within CCNA_00832 at 897.694 kb on - strand, within CCNA_00832 at 897.696 kb on + strand, within CCNA_00832 at 897.704 kb on - strand, within CCNA_00832 at 897.730 kb on + strand, within CCNA_00832 at 897.745 kb on - strand, within CCNA_00832 at 897.745 kb on - strand, within CCNA_00832 at 897.745 kb on - strand, within CCNA_00832 at 897.751 kb on - strand, within CCNA_00832 at 897.793 kb on + strand, within CCNA_00832 at 897.816 kb on + strand, within CCNA_00832 at 897.823 kb on + strand, within CCNA_00832 at 897.824 kb on - strand, within CCNA_00832 at 897.824 kb on - strand, within CCNA_00832 at 897.833 kb on + strand, within CCNA_00832 at 897.860 kb on - strand, within CCNA_00832 at 897.865 kb on - strand, within CCNA_00832 at 897.878 kb on - strand, within CCNA_00832 at 897.891 kb on + strand, within CCNA_00832 at 897.892 kb on - strand, within CCNA_00832 at 897.892 kb on - strand, within CCNA_00832 at 897.892 kb on - strand, within CCNA_00832 at 897.892 kb on - strand, within CCNA_00832 at 897.892 kb on - strand, within CCNA_00832 at 897.917 kb on + strand, within CCNA_00832 at 897.953 kb on + strand, within CCNA_00832 at 897.953 kb on + strand, within CCNA_00832 at 897.953 kb on + strand, within CCNA_00832 at 897.961 kb on - strand, within CCNA_00832 at 897.979 kb on + strand, within CCNA_00832 at 897.987 kb on - strand, within CCNA_00832 at 898.034 kb on + strand, within CCNA_00832 at 898.037 kb on - strand, within CCNA_00832 at 898.042 kb on - strand, within CCNA_00832 at 898.047 kb on + strand, within CCNA_00832 at 898.047 kb on + strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.055 kb on - strand, within CCNA_00832 at 898.056 kb on + strand, within CCNA_00832 at 898.099 kb on - strand, within CCNA_00832 at 898.100 kb on - strand, within CCNA_00832 at 898.107 kb on + strand at 898.121 kb on - strand, within CCNA_00832 at 898.125 kb on + strand, within CCNA_00832 at 898.149 kb on + strand, within CCNA_00832 at 898.168 kb on - strand, within CCNA_00832 at 898.168 kb on - strand, within CCNA_00832 at 898.172 kb on + strand, within CCNA_00832 at 898.172 kb on + strand, within CCNA_00832 at 898.185 kb on - strand, within CCNA_00832 at 898.199 kb on - strand, within CCNA_00832 at 898.203 kb on + strand, within CCNA_00832 at 898.210 kb on + strand, within CCNA_00832 at 898.210 kb on + strand, within CCNA_00832 at 898.210 kb on + strand, within CCNA_00832 at 898.218 kb on - strand, within CCNA_00832 at 898.218 kb on - strand, within CCNA_00832 at 898.218 kb on - strand, within CCNA_00832 at 898.218 kb on - strand, within CCNA_00832 at 898.218 kb on - strand, within CCNA_00832 at 898.224 kb on - strand, within CCNA_00832 at 898.295 kb on - strand, within CCNA_00832 at 898.300 kb on - strand, within CCNA_00832 at 898.321 kb on + strand, within CCNA_00832 at 898.321 kb on + strand, within CCNA_00832 at 898.329 kb on - strand, within CCNA_00832 at 898.329 kb on - strand, within CCNA_00832 at 898.386 kb on + strand, within CCNA_00832 at 898.414 kb on - strand at 898.414 kb on - strand at 898.414 kb on - strand at 898.424 kb on + strand at 898.441 kb on + strand at 898.449 kb on - strand at 898.449 kb on - strand at 898.449 kb on - strand at 898.449 kb on - strand at 898.450 kb on - strand at 898.476 kb on + strand at 898.476 kb on + strand at 898.476 kb on + strand at 898.476 kb on + strand at 898.477 kb on + strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.561 kb on - strand at 898.597 kb on + strand at 898.597 kb on + strand at 898.603 kb on + strand at 898.605 kb on - strand at 898.661 kb on + strand at 898.668 kb on - strand at 898.668 kb on - strand at 898.668 kb on - strand at 898.669 kb on - strand at 898.669 kb on - strand at 898.682 kb on - strand, within CCNA_00833 at 898.721 kb on + strand, within CCNA_00833 at 898.733 kb on + strand, within CCNA_00833 at 898.742 kb on - strand, within CCNA_00833 at 898.742 kb on - strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.814 kb on - strand, within CCNA_00833 at 898.814 kb on - strand, within CCNA_00833 at 898.906 kb on + strand, within CCNA_00833 at 898.941 kb on - strand, within CCNA_00833 at 898.963 kb on + strand, within CCNA_00833 at 898.971 kb on - strand, within CCNA_00833 at 898.994 kb on + strand, within CCNA_00833 at 899.061 kb on + strand, within CCNA_00833 at 899.079 kb on - strand, within CCNA_00833 at 899.139 kb on - strand, within CCNA_00833 at 899.144 kb on - strand, within CCNA_00833 at 899.213 kb on - strand at 899.216 kb on - strand at 899.262 kb on - strand at 899.361 kb on - strand at 899.361 kb on - strand at 899.376 kb on - strand, within CCNA_03942 at 899.392 kb on - strand, within CCNA_03942 at 899.420 kb on + strand, within CCNA_03942 at 899.428 kb on - strand, within CCNA_03942 at 899.629 kb on + strand at 899.639 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.673 kb on - strand at 899.673 kb on - strand at 899.673 kb on - strand at 899.675 kb on + strand at 899.678 kb on - strand at 899.683 kb on - strand at 899.737 kb on - strand at 899.752 kb on - strand, within CCNA_00834 at 899.755 kb on + strand, within CCNA_00834 at 899.978 kb on + strand, within CCNA_00834 at 899.988 kb on + strand, within CCNA_00834 at 900.007 kb on + strand, within CCNA_00834 at 900.059 kb on - strand, within CCNA_00834 at 900.065 kb on - strand, within CCNA_00834 at 900.065 kb on - strand, within CCNA_00834 at 900.089 kb on + strand, within CCNA_00834 at 900.089 kb on + strand, within CCNA_00834 at 900.127 kb on + strand, within CCNA_00834 at 900.147 kb on + strand, within CCNA_00834 at 900.148 kb on + strand, within CCNA_00834 at 900.150 kb on - strand, within CCNA_00834 at 900.155 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 1.25 mM remove 897,646 - +1.1 897,648 + +1.5 897,656 - +2.8 897,656 - +1.3 897,670 - +1.0 897,675 - CCNA_00832 0.10 +1.1 897,691 + CCNA_00832 0.12 +0.3 897,694 - CCNA_00832 0.12 +1.6 897,696 + CCNA_00832 0.13 -0.8 897,704 - CCNA_00832 0.14 +1.5 897,730 + CCNA_00832 0.16 -0.8 897,745 - CCNA_00832 0.18 +0.7 897,745 - CCNA_00832 0.18 +1.1 897,745 - CCNA_00832 0.18 +1.1 897,751 - CCNA_00832 0.19 +1.0 897,793 + CCNA_00832 0.23 -1.7 897,816 + CCNA_00832 0.26 -0.8 897,823 + CCNA_00832 0.27 -1.3 897,824 - CCNA_00832 0.27 +0.7 897,824 - CCNA_00832 0.27 +1.6 897,833 + CCNA_00832 0.28 +1.5 897,860 - CCNA_00832 0.31 +0.8 897,865 - CCNA_00832 0.31 +1.2 897,878 - CCNA_00832 0.33 +0.9 897,891 + CCNA_00832 0.34 -1.1 897,892 - CCNA_00832 0.34 +0.8 897,892 - CCNA_00832 0.34 -0.1 897,892 - CCNA_00832 0.34 -0.7 897,892 - CCNA_00832 0.34 +1.6 897,892 - CCNA_00832 0.34 +1.3 897,917 + CCNA_00832 0.37 -1.6 897,953 + CCNA_00832 0.41 -1.2 897,953 + CCNA_00832 0.41 -1.5 897,953 + CCNA_00832 0.41 -1.8 897,961 - CCNA_00832 0.42 +0.2 897,979 + CCNA_00832 0.44 -0.0 897,987 - CCNA_00832 0.45 +0.7 898,034 + CCNA_00832 0.50 -0.5 898,037 - CCNA_00832 0.51 +1.1 898,042 - CCNA_00832 0.51 +0.6 898,047 + CCNA_00832 0.52 -1.5 898,047 + CCNA_00832 0.52 -0.2 898,055 - CCNA_00832 0.53 +1.1 898,055 - CCNA_00832 0.53 +1.3 898,055 - CCNA_00832 0.53 +0.8 898,055 - CCNA_00832 0.53 +0.7 898,055 - CCNA_00832 0.53 +1.1 898,055 - CCNA_00832 0.53 +0.8 898,055 - CCNA_00832 0.53 +1.2 898,055 - CCNA_00832 0.53 +0.9 898,056 + CCNA_00832 0.53 -1.3 898,099 - CCNA_00832 0.57 +1.3 898,100 - CCNA_00832 0.58 -0.5 898,107 + +2.1 898,121 - CCNA_00832 0.60 +0.4 898,125 + CCNA_00832 0.60 -1.8 898,149 + CCNA_00832 0.63 -0.0 898,168 - CCNA_00832 0.65 +1.7 898,168 - CCNA_00832 0.65 +0.8 898,172 + CCNA_00832 0.66 -1.1 898,172 + CCNA_00832 0.66 -0.6 898,185 - CCNA_00832 0.67 +1.1 898,199 - CCNA_00832 0.69 +1.2 898,203 + CCNA_00832 0.69 +0.8 898,210 + CCNA_00832 0.70 -0.0 898,210 + CCNA_00832 0.70 -1.9 898,210 + CCNA_00832 0.70 -0.1 898,218 - CCNA_00832 0.71 +0.3 898,218 - CCNA_00832 0.71 +1.7 898,218 - CCNA_00832 0.71 +1.5 898,218 - CCNA_00832 0.71 +0.5 898,218 - CCNA_00832 0.71 -0.3 898,224 - CCNA_00832 0.71 +1.4 898,295 - CCNA_00832 0.79 +0.9 898,300 - CCNA_00832 0.80 +0.2 898,321 + CCNA_00832 0.82 -1.0 898,321 + CCNA_00832 0.82 -1.0 898,329 - CCNA_00832 0.83 +0.7 898,329 - CCNA_00832 0.83 +0.0 898,386 + CCNA_00832 0.89 -1.2 898,414 - -0.4 898,414 - +0.5 898,414 - +0.9 898,424 + -1.2 898,441 + -1.3 898,449 - -0.7 898,449 - +0.9 898,449 - -0.3 898,449 - -0.5 898,450 - +0.8 898,476 + -1.0 898,476 + -0.4 898,476 + -1.8 898,476 + -1.3 898,477 + +0.5 898,484 - +0.3 898,484 - -1.0 898,484 - -0.5 898,484 - +0.7 898,484 - +0.8 898,484 - -0.8 898,484 - -1.5 898,484 - -0.0 898,561 - +0.4 898,597 + -1.2 898,597 + +0.3 898,603 + -1.8 898,605 - -2.1 898,661 + -1.3 898,668 - -1.2 898,668 - +0.5 898,668 - +0.4 898,669 - +0.5 898,669 - -0.7 898,682 - CCNA_00833 0.10 -0.3 898,721 + CCNA_00833 0.17 +0.8 898,733 + CCNA_00833 0.19 -0.1 898,742 - CCNA_00833 0.20 -2.8 898,742 - CCNA_00833 0.20 +0.9 898,772 + CCNA_00833 0.25 -1.9 898,772 + CCNA_00833 0.25 -2.5 898,772 + CCNA_00833 0.25 -0.0 898,780 - CCNA_00833 0.27 -2.0 898,780 - CCNA_00833 0.27 -0.3 898,780 - CCNA_00833 0.27 -0.7 898,780 - CCNA_00833 0.27 -0.9 898,814 - CCNA_00833 0.32 -2.4 898,814 - CCNA_00833 0.32 -0.7 898,906 + CCNA_00833 0.48 -2.1 898,941 - CCNA_00833 0.54 -1.0 898,963 + CCNA_00833 0.57 -1.8 898,971 - CCNA_00833 0.58 -0.6 898,994 + CCNA_00833 0.62 -1.0 899,061 + CCNA_00833 0.73 -1.4 899,079 - CCNA_00833 0.77 -1.0 899,139 - CCNA_00833 0.86 -0.6 899,144 - CCNA_00833 0.87 -1.0 899,213 - +1.5 899,216 - -0.3 899,262 - -1.3 899,361 - -1.3 899,361 - +0.4 899,376 - CCNA_03942 0.15 +0.2 899,392 - CCNA_03942 0.27 -2.4 899,420 + CCNA_03942 0.47 -0.4 899,428 - CCNA_03942 0.53 -1.0 899,629 + +0.7 899,639 + -0.3 899,665 + -1.0 899,665 + +0.1 899,665 + +1.1 899,665 + +0.7 899,673 - -1.2 899,673 - +0.9 899,673 - -0.7 899,675 + -0.0 899,678 - -1.1 899,683 - +0.1 899,737 - -1.8 899,752 - CCNA_00834 0.11 -1.5 899,755 + CCNA_00834 0.11 +1.1 899,978 + CCNA_00834 0.38 -0.8 899,988 + CCNA_00834 0.40 +0.4 900,007 + CCNA_00834 0.42 +1.0 900,059 - CCNA_00834 0.48 -0.3 900,065 - CCNA_00834 0.49 -1.7 900,065 - CCNA_00834 0.49 -2.9 900,089 + CCNA_00834 0.52 +1.5 900,089 + CCNA_00834 0.52 +1.0 900,127 + CCNA_00834 0.57 +1.3 900,147 + CCNA_00834 0.59 +2.0 900,148 + CCNA_00834 0.59 +2.0 900,150 - CCNA_00834 0.59 -1.0 900,155 - CCNA_00834 0.60 -1.7 900,156 - CCNA_00834 0.60 -0.7 900,156 - CCNA_00834 0.60 +0.5 900,156 - CCNA_00834 0.60 +0.7
Or see this region's nucleotide sequence