Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00609

Experiment: PYE with nitrite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00608 and CCNA_00609 are separated by 83 nucleotidesCCNA_00609 and CCNA_00610 are separated by 12 nucleotides CCNA_00608: CCNA_00608 - endopygalactorunase, at 645,702 to 647,285 _00608 CCNA_00609: CCNA_00609 - PurR-family transcriptional regulator, at 647,369 to 648,415 _00609 CCNA_00610: CCNA_00610 - alpha-1,2-mannosidase, at 648,428 to 651,031 _00610 Position (kb) 647 648 649Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 646.445 kb on - strand, within CCNA_00608at 646.445 kb on - strand, within CCNA_00608at 646.473 kb on + strand, within CCNA_00608at 646.473 kb on + strand, within CCNA_00608at 646.481 kb on - strand, within CCNA_00608at 646.481 kb on - strand, within CCNA_00608at 646.481 kb on - strand, within CCNA_00608at 646.494 kb on + strand, within CCNA_00608at 646.541 kb on + strand, within CCNA_00608at 646.580 kb on - strand, within CCNA_00608at 646.585 kb on + strand, within CCNA_00608at 646.593 kb on - strand, within CCNA_00608at 646.594 kb on - strand, within CCNA_00608at 646.621 kb on - strand, within CCNA_00608at 646.646 kb on - strand, within CCNA_00608at 646.699 kb on - strand, within CCNA_00608at 646.714 kb on + strand, within CCNA_00608at 646.722 kb on - strand, within CCNA_00608at 646.722 kb on - strand, within CCNA_00608at 646.733 kb on + strand, within CCNA_00608at 646.738 kb on + strand, within CCNA_00608at 646.772 kb on - strand, within CCNA_00608at 646.778 kb on - strand, within CCNA_00608at 646.782 kb on - strand, within CCNA_00608at 646.787 kb on - strand, within CCNA_00608at 646.790 kb on + strand, within CCNA_00608at 646.790 kb on + strand, within CCNA_00608at 646.801 kb on + strand, within CCNA_00608at 646.809 kb on - strand, within CCNA_00608at 646.819 kb on + strand, within CCNA_00608at 646.819 kb on + strand, within CCNA_00608at 646.839 kb on - strand, within CCNA_00608at 646.844 kb on - strand, within CCNA_00608at 646.850 kb on + strand, within CCNA_00608at 646.878 kb on + strand, within CCNA_00608at 646.878 kb on + strand, within CCNA_00608at 646.878 kb on + strand, within CCNA_00608at 646.886 kb on - strand, within CCNA_00608at 646.911 kb on + strand, within CCNA_00608at 646.918 kb on - strand, within CCNA_00608at 646.919 kb on + strand, within CCNA_00608at 646.919 kb on + strand, within CCNA_00608at 646.919 kb on - strand, within CCNA_00608at 646.927 kb on - strand, within CCNA_00608at 646.927 kb on - strand, within CCNA_00608at 646.928 kb on - strand, within CCNA_00608at 646.967 kb on + strand, within CCNA_00608at 646.986 kb on - strand, within CCNA_00608at 646.990 kb on - strand, within CCNA_00608at 646.997 kb on - strand, within CCNA_00608at 647.004 kb on + strand, within CCNA_00608at 647.016 kb on - strand, within CCNA_00608at 647.101 kb on + strand, within CCNA_00608at 647.101 kb on + strand, within CCNA_00608at 647.101 kb on + strand, within CCNA_00608at 647.109 kb on - strand, within CCNA_00608at 647.109 kb on - strand, within CCNA_00608at 647.109 kb on - strand, within CCNA_00608at 647.118 kb on + strand, within CCNA_00608at 647.157 kb on - strandat 647.186 kb on + strandat 647.200 kb on + strandat 647.215 kb on + strandat 647.215 kb on + strandat 647.223 kb on - strandat 647.241 kb on + strandat 647.263 kb on + strandat 647.309 kb on + strandat 647.310 kb on - strandat 647.317 kb on - strandat 647.317 kb on - strandat 647.327 kb on - strandat 647.330 kb on + strandat 647.344 kb on + strandat 647.361 kb on - strandat 647.392 kb on + strandat 647.417 kb on + strandat 647.442 kb on + strandat 647.476 kb on - strand, within CCNA_00609at 647.494 kb on + strand, within CCNA_00609at 647.549 kb on + strand, within CCNA_00609at 647.554 kb on + strand, within CCNA_00609at 647.565 kb on + strand, within CCNA_00609at 647.588 kb on - strand, within CCNA_00609at 647.628 kb on - strand, within CCNA_00609at 647.651 kb on + strand, within CCNA_00609at 647.656 kb on + strand, within CCNA_00609at 647.656 kb on + strand, within CCNA_00609at 647.659 kb on - strand, within CCNA_00609at 647.664 kb on - strand, within CCNA_00609at 647.682 kb on + strand, within CCNA_00609at 647.684 kb on + strand, within CCNA_00609at 647.684 kb on + strand, within CCNA_00609at 647.690 kb on - strand, within CCNA_00609at 647.695 kb on - strand, within CCNA_00609at 647.700 kb on - strand, within CCNA_00609at 647.702 kb on + strand, within CCNA_00609at 647.714 kb on + strand, within CCNA_00609at 647.714 kb on + strand, within CCNA_00609at 647.714 kb on + strand, within CCNA_00609at 647.722 kb on - strand, within CCNA_00609at 647.722 kb on - strand, within CCNA_00609at 647.745 kb on - strand, within CCNA_00609at 647.745 kb on - strand, within CCNA_00609at 647.747 kb on + strand, within CCNA_00609at 647.752 kb on - strand, within CCNA_00609at 647.753 kb on - strand, within CCNA_00609at 647.755 kb on - strand, within CCNA_00609at 647.782 kb on + strand, within CCNA_00609at 647.815 kb on - strand, within CCNA_00609at 647.824 kb on + strand, within CCNA_00609at 647.824 kb on + strand, within CCNA_00609at 647.824 kb on + strand, within CCNA_00609at 647.824 kb on + strand, within CCNA_00609at 647.832 kb on - strand, within CCNA_00609at 647.832 kb on - strand, within CCNA_00609at 647.858 kb on - strand, within CCNA_00609at 647.867 kb on + strand, within CCNA_00609at 647.873 kb on + strand, within CCNA_00609at 647.875 kb on - strand, within CCNA_00609at 647.906 kb on + strand, within CCNA_00609at 647.906 kb on + strand, within CCNA_00609at 647.914 kb on - strand, within CCNA_00609at 647.948 kb on - strand, within CCNA_00609at 647.993 kb on + strand, within CCNA_00609at 648.028 kb on + strand, within CCNA_00609at 648.043 kb on + strand, within CCNA_00609at 648.075 kb on + strand, within CCNA_00609at 648.075 kb on + strand, within CCNA_00609at 648.083 kb on - strand, within CCNA_00609at 648.100 kb on + strand, within CCNA_00609at 648.127 kb on + strand, within CCNA_00609at 648.155 kb on + strand, within CCNA_00609at 648.167 kb on + strand, within CCNA_00609at 648.214 kb on - strand, within CCNA_00609at 648.254 kb on + strand, within CCNA_00609at 648.259 kb on - strand, within CCNA_00609at 648.267 kb on - strand, within CCNA_00609at 648.267 kb on - strand, within CCNA_00609at 648.298 kb on - strand, within CCNA_00609at 648.307 kb on - strand, within CCNA_00609at 648.309 kb on + strand, within CCNA_00609at 648.370 kb on + strandat 648.378 kb on + strandat 648.386 kb on - strandat 648.386 kb on - strandat 648.388 kb on - strandat 648.390 kb on + strandat 648.395 kb on + strandat 648.398 kb on - strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.402 kb on + strandat 648.408 kb on - strandat 648.410 kb on - strandat 648.410 kb on - strandat 648.410 kb on - strandat 648.410 kb on - strandat 648.410 kb on - strandat 648.410 kb on - strandat 648.420 kb on + strandat 648.425 kb on + strandat 648.456 kb on + strandat 648.483 kb on + strandat 648.488 kb on + strandat 648.502 kb on - strandat 648.509 kb on + strandat 648.515 kb on + strandat 648.517 kb on - strandat 648.523 kb on - strandat 648.523 kb on - strandat 648.539 kb on + strandat 648.539 kb on - strandat 648.539 kb on - strandat 648.547 kb on - strandat 648.652 kb on + strandat 648.698 kb on + strand, within CCNA_00610at 648.784 kb on - strand, within CCNA_00610at 648.804 kb on - strand, within CCNA_00610at 648.808 kb on + strand, within CCNA_00610at 648.832 kb on + strand, within CCNA_00610at 648.840 kb on - strandat 648.868 kb on + strand, within CCNA_00610at 648.877 kb on - strand, within CCNA_00610at 648.877 kb on - strand, within CCNA_00610at 648.879 kb on + strand, within CCNA_00610at 648.887 kb on - strand, within CCNA_00610at 648.904 kb on - strand, within CCNA_00610at 648.904 kb on - strand, within CCNA_00610at 648.913 kb on - strand, within CCNA_00610at 648.916 kb on + strand, within CCNA_00610at 648.931 kb on + strand, within CCNA_00610at 648.931 kb on + strand, within CCNA_00610at 648.939 kb on - strand, within CCNA_00610at 648.940 kb on - strand, within CCNA_00610at 648.962 kb on + strand, within CCNA_00610at 648.983 kb on + strand, within CCNA_00610at 648.991 kb on - strand, within CCNA_00610at 648.995 kb on + strand, within CCNA_00610at 649.013 kb on - strand, within CCNA_00610at 649.015 kb on + strand, within CCNA_00610at 649.033 kb on + strand, within CCNA_00610at 649.039 kb on + strand, within CCNA_00610at 649.039 kb on + strand, within CCNA_00610at 649.039 kb on + strand, within CCNA_00610at 649.039 kb on + strand, within CCNA_00610at 649.039 kb on + strand, within CCNA_00610at 649.039 kb on + strand, within CCNA_00610at 649.039 kb on + strand, within CCNA_00610at 649.039 kb on + strand, within CCNA_00610at 649.047 kb on - strand, within CCNA_00610at 649.047 kb on - strand, within CCNA_00610at 649.047 kb on - strand, within CCNA_00610at 649.047 kb on - strand, within CCNA_00610at 649.061 kb on + strand, within CCNA_00610at 649.099 kb on + strand, within CCNA_00610at 649.110 kb on + strand, within CCNA_00610at 649.115 kb on + strand, within CCNA_00610at 649.118 kb on - strand, within CCNA_00610at 649.123 kb on + strand, within CCNA_00610at 649.130 kb on + strand, within CCNA_00610at 649.138 kb on - strand, within CCNA_00610at 649.138 kb on - strand, within CCNA_00610at 649.154 kb on - strand, within CCNA_00610at 649.161 kb on - strand, within CCNA_00610at 649.166 kb on + strand, within CCNA_00610at 649.172 kb on + strand, within CCNA_00610at 649.174 kb on - strand, within CCNA_00610at 649.221 kb on - strand, within CCNA_00610at 649.221 kb on - strand, within CCNA_00610at 649.245 kb on + strand, within CCNA_00610at 649.254 kb on + strand, within CCNA_00610at 649.264 kb on + strand, within CCNA_00610at 649.272 kb on - strand, within CCNA_00610at 649.279 kb on - strand, within CCNA_00610at 649.352 kb on + strand, within CCNA_00610at 649.360 kb on - strand, within CCNA_00610at 649.360 kb on - strand, within CCNA_00610at 649.369 kb on + strand, within CCNA_00610at 649.404 kb on - strand, within CCNA_00610at 649.406 kb on + strand, within CCNA_00610at 649.411 kb on + strand, within CCNA_00610at 649.414 kb on - strand, within CCNA_00610

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 1.25 mM
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646,445 - CCNA_00608 0.47 -0.2
646,445 - CCNA_00608 0.47 -0.8
646,473 + CCNA_00608 0.49 -0.0
646,473 + CCNA_00608 0.49 +0.3
646,481 - CCNA_00608 0.49 -1.8
646,481 - CCNA_00608 0.49 -0.2
646,481 - CCNA_00608 0.49 +0.2
646,494 + CCNA_00608 0.50 -2.1
646,541 + CCNA_00608 0.53 -2.4
646,580 - CCNA_00608 0.55 +1.0
646,585 + CCNA_00608 0.56 -0.5
646,593 - CCNA_00608 0.56 -0.7
646,594 - CCNA_00608 0.56 -0.8
646,621 - CCNA_00608 0.58 -0.5
646,646 - CCNA_00608 0.60 +0.7
646,699 - CCNA_00608 0.63 -1.2
646,714 + CCNA_00608 0.64 -2.1
646,722 - CCNA_00608 0.64 -1.4
646,722 - CCNA_00608 0.64 -2.1
646,733 + CCNA_00608 0.65 -0.9
646,738 + CCNA_00608 0.65 -0.7
646,772 - CCNA_00608 0.68 +0.7
646,778 - CCNA_00608 0.68 +2.1
646,782 - CCNA_00608 0.68 +0.4
646,787 - CCNA_00608 0.68 -1.7
646,790 + CCNA_00608 0.69 -1.9
646,790 + CCNA_00608 0.69 +1.1
646,801 + CCNA_00608 0.69 +0.4
646,809 - CCNA_00608 0.70 +0.6
646,819 + CCNA_00608 0.71 +1.3
646,819 + CCNA_00608 0.71 +0.4
646,839 - CCNA_00608 0.72 +1.1
646,844 - CCNA_00608 0.72 -0.2
646,850 + CCNA_00608 0.72 -0.4
646,878 + CCNA_00608 0.74 -1.0
646,878 + CCNA_00608 0.74 +1.7
646,878 + CCNA_00608 0.74 +0.0
646,886 - CCNA_00608 0.75 +0.5
646,911 + CCNA_00608 0.76 +0.2
646,918 - CCNA_00608 0.77 +0.7
646,919 + CCNA_00608 0.77 -0.0
646,919 + CCNA_00608 0.77 +0.0
646,919 - CCNA_00608 0.77 -1.1
646,927 - CCNA_00608 0.77 +0.4
646,927 - CCNA_00608 0.77 +0.7
646,928 - CCNA_00608 0.77 +0.6
646,967 + CCNA_00608 0.80 +0.2
646,986 - CCNA_00608 0.81 +1.4
646,990 - CCNA_00608 0.81 +0.8
646,997 - CCNA_00608 0.82 -0.1
647,004 + CCNA_00608 0.82 -1.8
647,016 - CCNA_00608 0.83 -0.6
647,101 + CCNA_00608 0.88 -0.5
647,101 + CCNA_00608 0.88 -1.8
647,101 + CCNA_00608 0.88 -0.2
647,109 - CCNA_00608 0.89 +0.3
647,109 - CCNA_00608 0.89 -2.0
647,109 - CCNA_00608 0.89 +2.4
647,118 + CCNA_00608 0.89 +0.5
647,157 - -1.0
647,186 + -0.3
647,200 + +1.1
647,215 + -0.2
647,215 + -0.3
647,223 - +0.6
647,241 + -2.0
647,263 + -0.9
647,309 + -0.3
647,310 - -0.2
647,317 - -1.1
647,317 - -0.0
647,327 - +1.7
647,330 + +0.2
647,344 + -1.7
647,361 - -2.4
647,392 + -1.0
647,417 + -2.5
647,442 + -2.5
647,476 - CCNA_00609 0.10 -0.6
647,494 + CCNA_00609 0.12 +2.1
647,549 + CCNA_00609 0.17 -0.6
647,554 + CCNA_00609 0.18 +0.5
647,565 + CCNA_00609 0.19 -2.1
647,588 - CCNA_00609 0.21 +0.1
647,628 - CCNA_00609 0.25 -1.4
647,651 + CCNA_00609 0.27 -1.2
647,656 + CCNA_00609 0.27 -1.2
647,656 + CCNA_00609 0.27 -0.9
647,659 - CCNA_00609 0.28 +0.2
647,664 - CCNA_00609 0.28 -0.9
647,682 + CCNA_00609 0.30 -2.1
647,684 + CCNA_00609 0.30 +0.9
647,684 + CCNA_00609 0.30 +0.6
647,690 - CCNA_00609 0.31 +1.3
647,695 - CCNA_00609 0.31 -0.6
647,700 - CCNA_00609 0.32 -0.0
647,702 + CCNA_00609 0.32 +0.6
647,714 + CCNA_00609 0.33 +0.0
647,714 + CCNA_00609 0.33 -0.0
647,714 + CCNA_00609 0.33 -0.2
647,722 - CCNA_00609 0.34 -0.7
647,722 - CCNA_00609 0.34 +0.3
647,745 - CCNA_00609 0.36 -1.1
647,745 - CCNA_00609 0.36 -0.9
647,747 + CCNA_00609 0.36 -1.2
647,752 - CCNA_00609 0.37 -0.8
647,753 - CCNA_00609 0.37 -0.5
647,755 - CCNA_00609 0.37 -1.3
647,782 + CCNA_00609 0.39 +0.3
647,815 - CCNA_00609 0.43 +0.5
647,824 + CCNA_00609 0.43 -2.4
647,824 + CCNA_00609 0.43 -2.1
647,824 + CCNA_00609 0.43 -0.3
647,824 + CCNA_00609 0.43 -1.1
647,832 - CCNA_00609 0.44 -0.9
647,832 - CCNA_00609 0.44 -0.9
647,858 - CCNA_00609 0.47 -0.7
647,867 + CCNA_00609 0.48 -0.2
647,873 + CCNA_00609 0.48 +0.4
647,875 - CCNA_00609 0.48 +0.7
647,906 + CCNA_00609 0.51 -2.2
647,906 + CCNA_00609 0.51 -1.5
647,914 - CCNA_00609 0.52 +0.1
647,948 - CCNA_00609 0.55 -0.4
647,993 + CCNA_00609 0.60 -0.4
648,028 + CCNA_00609 0.63 +0.4
648,043 + CCNA_00609 0.64 +0.0
648,075 + CCNA_00609 0.67 +1.1
648,075 + CCNA_00609 0.67 -1.6
648,083 - CCNA_00609 0.68 +1.0
648,100 + CCNA_00609 0.70 +0.0
648,127 + CCNA_00609 0.72 -0.0
648,155 + CCNA_00609 0.75 +0.5
648,167 + CCNA_00609 0.76 -0.4
648,214 - CCNA_00609 0.81 -1.0
648,254 + CCNA_00609 0.85 -0.9
648,259 - CCNA_00609 0.85 +0.8
648,267 - CCNA_00609 0.86 -0.4
648,267 - CCNA_00609 0.86 -3.1
648,298 - CCNA_00609 0.89 -0.3
648,307 - CCNA_00609 0.90 -1.2
648,309 + CCNA_00609 0.90 -2.0
648,370 + -0.8
648,378 + +0.5
648,386 - -1.4
648,386 - -0.0
648,388 - -1.4
648,390 + +0.5
648,395 + +0.4
648,398 - -1.4
648,402 + +1.0
648,402 + +0.3
648,402 + +0.3
648,402 + +0.8
648,402 + +2.3
648,402 + -0.7
648,402 + +1.4
648,402 + +0.5
648,402 + +1.0
648,402 + +0.5
648,402 + +0.3
648,402 + +1.0
648,408 - +1.9
648,410 - -0.6
648,410 - +1.1
648,410 - -0.4
648,410 - +0.3
648,410 - +0.4
648,410 - -1.5
648,420 + -2.4
648,425 + +1.8
648,456 + +1.9
648,483 + -1.0
648,488 + -1.2
648,502 - -1.4
648,509 + +0.5
648,515 + -0.6
648,517 - +2.0
648,523 - -1.4
648,523 - -2.2
648,539 + -1.1
648,539 - -0.2
648,539 - +2.0
648,547 - +1.0
648,652 + -2.2
648,698 + CCNA_00610 0.10 -0.5
648,784 - CCNA_00610 0.14 -0.7
648,804 - CCNA_00610 0.14 +0.1
648,808 + CCNA_00610 0.15 +1.4
648,832 + CCNA_00610 0.16 +0.1
648,840 - +1.7
648,868 + CCNA_00610 0.17 +0.1
648,877 - CCNA_00610 0.17 -2.0
648,877 - CCNA_00610 0.17 -0.1
648,879 + CCNA_00610 0.17 +0.4
648,887 - CCNA_00610 0.18 -0.4
648,904 - CCNA_00610 0.18 +1.0
648,904 - CCNA_00610 0.18 -2.2
648,913 - CCNA_00610 0.19 -0.4
648,916 + CCNA_00610 0.19 -0.1
648,931 + CCNA_00610 0.19 -0.4
648,931 + CCNA_00610 0.19 -1.3
648,939 - CCNA_00610 0.20 +0.9
648,940 - CCNA_00610 0.20 -1.6
648,962 + CCNA_00610 0.21 -1.4
648,983 + CCNA_00610 0.21 +1.0
648,991 - CCNA_00610 0.22 +1.0
648,995 + CCNA_00610 0.22 -1.5
649,013 - CCNA_00610 0.22 -0.3
649,015 + CCNA_00610 0.23 +1.5
649,033 + CCNA_00610 0.23 +0.0
649,039 + CCNA_00610 0.23 +1.8
649,039 + CCNA_00610 0.23 -0.9
649,039 + CCNA_00610 0.23 -0.5
649,039 + CCNA_00610 0.23 -0.6
649,039 + CCNA_00610 0.23 -1.5
649,039 + CCNA_00610 0.23 -0.3
649,039 + CCNA_00610 0.23 +1.1
649,039 + CCNA_00610 0.23 -1.4
649,047 - CCNA_00610 0.24 +0.8
649,047 - CCNA_00610 0.24 -0.5
649,047 - CCNA_00610 0.24 +0.7
649,047 - CCNA_00610 0.24 +0.8
649,061 + CCNA_00610 0.24 -2.0
649,099 + CCNA_00610 0.26 +0.2
649,110 + CCNA_00610 0.26 -1.4
649,115 + CCNA_00610 0.26 -0.5
649,118 - CCNA_00610 0.26 -0.1
649,123 + CCNA_00610 0.27 +0.9
649,130 + CCNA_00610 0.27 -2.6
649,138 - CCNA_00610 0.27 -0.8
649,138 - CCNA_00610 0.27 -0.6
649,154 - CCNA_00610 0.28 -1.3
649,161 - CCNA_00610 0.28 +1.8
649,166 + CCNA_00610 0.28 -0.5
649,172 + CCNA_00610 0.29 -0.1
649,174 - CCNA_00610 0.29 +1.3
649,221 - CCNA_00610 0.30 -0.6
649,221 - CCNA_00610 0.30 -1.8
649,245 + CCNA_00610 0.31 +0.1
649,254 + CCNA_00610 0.32 -0.0
649,264 + CCNA_00610 0.32 -0.2
649,272 - CCNA_00610 0.32 -0.7
649,279 - CCNA_00610 0.33 -0.2
649,352 + CCNA_00610 0.35 -0.6
649,360 - CCNA_00610 0.36 -0.7
649,360 - CCNA_00610 0.36 -0.6
649,369 + CCNA_00610 0.36 -0.2
649,404 - CCNA_00610 0.37 +0.1
649,406 + CCNA_00610 0.38 -2.1
649,411 + CCNA_00610 0.38 +1.4
649,414 - CCNA_00610 0.38 -0.1

Or see this region's nucleotide sequence