Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16220

Experiment: Recovery broth with Erythromycin 1e-05 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Erythromycin 1e-05 mM
1,385,623	-		BBR_RS16215	0.54	-0.7
1,385,623	-		BBR_RS16215	0.54	-0.8
1,385,654	+		BBR_RS16215	0.55	+0.1
1,385,663	+		BBR_RS16215	0.55	+0.1
1,385,666	+		BBR_RS16215	0.56	-1.8
1,385,729	-		BBR_RS16215	0.59	-0.1
1,385,766	+		BBR_RS16215	0.60	+0.6
1,385,792	+		BBR_RS16215	0.62	-1.3
1,385,894	-		BBR_RS16215	0.67	+0.5
1,385,894	-		BBR_RS16215	0.67	+0.1
1,385,894	-		BBR_RS16215	0.67	+0.9
1,385,894	-		BBR_RS16215	0.67	-0.9
1,385,896	+		BBR_RS16215	0.67	-1.8
1,385,904	-		BBR_RS16215	0.67	+0.3
1,385,904	-		BBR_RS16215	0.67	-0.5
1,385,906	+		BBR_RS16215	0.67	+0.8
1,385,906	+		BBR_RS16215	0.67	-0.3
1,385,914	-		BBR_RS16215	0.67	-1.6
1,385,923	+		BBR_RS16215	0.68	+0.4
1,386,042	-		BBR_RS16215	0.74	-2.0
1,386,049	-		BBR_RS16215	0.74	-0.3
1,386,079	-		BBR_RS16215	0.75	+0.7
1,386,089	-		BBR_RS16215	0.76	+0.3
1,386,094	+		BBR_RS16215	0.76	-0.4
1,386,102	-		BBR_RS16215	0.76	+0.2
1,386,143	+		BBR_RS16215	0.78	-0.4
1,386,151	-		BBR_RS16215	0.79	+0.6
1,386,151	-		BBR_RS16215	0.79	-0.1
1,386,168	-		BBR_RS16215	0.80	-0.7
1,386,181	+		BBR_RS16215	0.80	-0.2
1,386,198	-		BBR_RS16215	0.81	+0.2
1,386,218	-		BBR_RS16215	0.82	+0.3
1,386,218	-		BBR_RS16215	0.82	+0.5
1,386,218	-		BBR_RS16215	0.82	+0.3
1,386,245	-		BBR_RS16215	0.83	+0.6
1,386,245	-		BBR_RS16215	0.83	+0.8
1,386,271	-		BBR_RS16215	0.85	-1.7
1,386,422	-				-0.2
1,386,436	-				+0.5
1,386,480	+				-0.1
1,387,366	+		BBR_RS16220	0.73	-3.1
1,387,671	-				+0.5
1,387,719	+				-0.5
1,387,729	+				-0.2
1,387,736	-				+0.2
1,387,775	+				-0.6
1,387,775	+				-0.6
1,387,783	-				-0.1
1,387,790	+				-0.3
1,387,798	+				-0.9
1,387,798	-				+0.5
1,387,867	+				-0.2
1,387,869	+				-0.2
1,387,869	+				+0.1
1,387,879	+				-0.1
1,388,058	-				-0.7
1,388,074	-				+0.4
1,388,147	+		BBR_RS16225	0.12	+2.1
1,388,185	+		BBR_RS16225	0.14	+0.1
1,388,185	+		BBR_RS16225	0.14	-0.2
1,388,198	-		BBR_RS16225	0.15	-1.2
1,388,226	-		BBR_RS16225	0.17	+0.3
1,388,237	+		BBR_RS16225	0.17	-0.1
1,388,249	+		BBR_RS16225	0.18	+1.0
1,388,249	+		BBR_RS16225	0.18	-0.1
1,388,249	+		BBR_RS16225	0.18	+0.5
1,388,257	-		BBR_RS16225	0.18	+0.4
1,388,257	-		BBR_RS16225	0.18	+0.1
1,388,257	-		BBR_RS16225	0.18	+0.5
1,388,257	-		BBR_RS16225	0.18	-1.3
1,388,257	-		BBR_RS16225	0.18	+0.2
1,388,257	-		BBR_RS16225	0.18	-0.3
1,388,262	-		BBR_RS16225	0.18	-0.3
1,388,326	+		BBR_RS16225	0.22	+0.0
1,388,326	+		BBR_RS16225	0.22	+0.2
1,388,341	+		BBR_RS16225	0.23	-0.4
1,388,341	+		BBR_RS16225	0.23	-0.3
1,388,387	-		BBR_RS16225	0.25	-1.6
1,388,397	-		BBR_RS16225	0.25	-0.2
1,388,419	-		BBR_RS16225	0.27	-0.6
1,388,444	+		BBR_RS16225	0.28	+0.2
1,388,465	+		BBR_RS16225	0.29	-1.2
1,388,549	+		BBR_RS16225	0.33	-0.1
1,388,551	+		BBR_RS16225	0.33	-0.7
1,388,556	+		BBR_RS16225	0.34	+0.6
1,388,559	-		BBR_RS16225	0.34	-0.6
1,388,615	+		BBR_RS16225	0.37	+0.3
1,388,615	+		BBR_RS16225	0.37	+0.3
1,388,615	+		BBR_RS16225	0.37	-0.0
1,388,615	+		BBR_RS16225	0.37	-0.1
1,388,615	+		BBR_RS16225	0.37	-0.3
1,388,623	-		BBR_RS16225	0.37	-0.2
1,388,623	-		BBR_RS16225	0.37	-0.1