Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19550

Experiment: no_plant_soil sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19545 and ABZR87_RS19550 overlap by 8 nucleotidesABZR87_RS19550 and ABZR87_RS19555 are separated by 9 nucleotides ABZR87_RS19545: ABZR87_RS19545 - CpaF family protein, at 757,184 to 758,539 _RS19545 ABZR87_RS19550: ABZR87_RS19550 - type II secretion system F family protein, at 758,532 to 759,458 _RS19550 ABZR87_RS19555: ABZR87_RS19555 - type II secretion system F family protein, at 759,468 to 760,457 _RS19555 Position (kb) 758 759 760Strain fitness (log2 ratio) -2 -1 0 1at 757.901 kb on + strand, within ABZR87_RS19545at 757.902 kb on - strand, within ABZR87_RS19545at 757.902 kb on - strand, within ABZR87_RS19545at 758.129 kb on - strand, within ABZR87_RS19545at 758.372 kb on + strand, within ABZR87_RS19545at 758.373 kb on - strand, within ABZR87_RS19545at 758.378 kb on + strand, within ABZR87_RS19545at 758.379 kb on - strand, within ABZR87_RS19545at 758.387 kb on + strand, within ABZR87_RS19545at 758.388 kb on - strand, within ABZR87_RS19545at 758.388 kb on - strand, within ABZR87_RS19545at 758.537 kb on + strandat 758.537 kb on + strandat 758.537 kb on + strandat 758.537 kb on + strandat 758.538 kb on - strandat 758.679 kb on + strand, within ABZR87_RS19550at 758.784 kb on + strand, within ABZR87_RS19550at 758.785 kb on - strand, within ABZR87_RS19550at 758.827 kb on + strand, within ABZR87_RS19550at 758.828 kb on - strand, within ABZR87_RS19550at 758.874 kb on + strand, within ABZR87_RS19550at 758.874 kb on + strand, within ABZR87_RS19550at 758.874 kb on + strand, within ABZR87_RS19550at 758.875 kb on - strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.456 kb on + strandat 759.457 kb on - strandat 759.457 kb on - strandat 759.804 kb on + strand, within ABZR87_RS19555at 759.805 kb on - strand, within ABZR87_RS19555at 759.842 kb on + strand, within ABZR87_RS19555at 759.842 kb on + strand, within ABZR87_RS19555at 759.843 kb on - strand, within ABZR87_RS19555at 759.843 kb on - strand, within ABZR87_RS19555at 759.940 kb on - strand, within ABZR87_RS19555at 759.950 kb on + strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 760.181 kb on + strand, within ABZR87_RS19555at 760.223 kb on + strand, within ABZR87_RS19555at 760.224 kb on - strand, within ABZR87_RS19555at 760.224 kb on - strand, within ABZR87_RS19555at 760.442 kb on + strandat 760.442 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB
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757,901 + ABZR87_RS19545 0.53 +0.5
757,902 - ABZR87_RS19545 0.53 +0.6
757,902 - ABZR87_RS19545 0.53 +1.3
758,129 - ABZR87_RS19545 0.70 +0.1
758,372 + ABZR87_RS19545 0.88 +0.3
758,373 - ABZR87_RS19545 0.88 +0.5
758,378 + ABZR87_RS19545 0.88 +0.7
758,379 - ABZR87_RS19545 0.88 +1.3
758,387 + ABZR87_RS19545 0.89 +0.4
758,388 - ABZR87_RS19545 0.89 +0.3
758,388 - ABZR87_RS19545 0.89 +1.6
758,537 + +1.4
758,537 + +0.9
758,537 + +0.9
758,537 + -1.4
758,538 - +0.7
758,679 + ABZR87_RS19550 0.16 +1.1
758,784 + ABZR87_RS19550 0.27 +0.6
758,785 - ABZR87_RS19550 0.27 +1.0
758,827 + ABZR87_RS19550 0.32 +1.1
758,828 - ABZR87_RS19550 0.32 +0.5
758,874 + ABZR87_RS19550 0.37 +0.6
758,874 + ABZR87_RS19550 0.37 +0.4
758,874 + ABZR87_RS19550 0.37 +0.9
758,875 - ABZR87_RS19550 0.37 -2.3
759,348 + ABZR87_RS19550 0.88 +0.4
759,348 + ABZR87_RS19550 0.88 +0.3
759,348 + ABZR87_RS19550 0.88 +1.0
759,348 + ABZR87_RS19550 0.88 +0.9
759,348 + ABZR87_RS19550 0.88 +0.9
759,348 + ABZR87_RS19550 0.88 +1.2
759,348 + ABZR87_RS19550 0.88 +0.2
759,349 - ABZR87_RS19550 0.88 +0.8
759,349 - ABZR87_RS19550 0.88 +0.6
759,349 - ABZR87_RS19550 0.88 +1.0
759,349 - ABZR87_RS19550 0.88 +0.2
759,349 - ABZR87_RS19550 0.88 +1.1
759,349 - ABZR87_RS19550 0.88 +0.8
759,349 - ABZR87_RS19550 0.88 +1.5
759,349 - ABZR87_RS19550 0.88 +0.8
759,456 + +0.5
759,457 - +1.0
759,457 - +1.0
759,804 + ABZR87_RS19555 0.34 +0.6
759,805 - ABZR87_RS19555 0.34 +1.0
759,842 + ABZR87_RS19555 0.38 +0.4
759,842 + ABZR87_RS19555 0.38 +0.5
759,843 - ABZR87_RS19555 0.38 +1.7
759,843 - ABZR87_RS19555 0.38 +0.9
759,940 - ABZR87_RS19555 0.48 +0.4
759,950 + ABZR87_RS19555 0.49 +0.3
759,951 - ABZR87_RS19555 0.49 +1.1
759,951 - ABZR87_RS19555 0.49 +0.7
759,951 - ABZR87_RS19555 0.49 +1.4
759,951 - ABZR87_RS19555 0.49 +1.3
759,951 - ABZR87_RS19555 0.49 +1.4
759,951 - ABZR87_RS19555 0.49 +0.2
760,181 + ABZR87_RS19555 0.72 -0.1
760,223 + ABZR87_RS19555 0.76 +0.3
760,224 - ABZR87_RS19555 0.76 -0.2
760,224 - ABZR87_RS19555 0.76 +1.3
760,442 + +0.5
760,442 + -0.2

Or see this region's nucleotide sequence