Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16745

Experiment: no_plant_soil sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16740 and ABZR87_RS16745 are separated by 46 nucleotidesABZR87_RS16745 and ABZR87_RS16750 are separated by 195 nucleotides ABZR87_RS16740: ABZR87_RS16740 - 2-methylcitrate synthase, at 105,909 to 107,078 _RS16740 ABZR87_RS16745: ABZR87_RS16745 - methylisocitrate lyase, at 107,125 to 108,021 _RS16745 ABZR87_RS16750: ABZR87_RS16750 - propionate catabolism operon regulatory protein PrpR, at 108,217 to 110,163 _RS16750 Position (kb) 107 108 109Strain fitness (log2 ratio) -2 -1 0 1at 106.249 kb on + strand, within ABZR87_RS16740at 106.250 kb on - strand, within ABZR87_RS16740at 106.333 kb on + strand, within ABZR87_RS16740at 106.420 kb on + strand, within ABZR87_RS16740at 106.420 kb on + strand, within ABZR87_RS16740at 106.420 kb on + strand, within ABZR87_RS16740at 106.420 kb on + strand, within ABZR87_RS16740at 106.421 kb on - strand, within ABZR87_RS16740at 106.421 kb on - strand, within ABZR87_RS16740at 106.489 kb on + strand, within ABZR87_RS16740at 106.489 kb on + strand, within ABZR87_RS16740at 106.621 kb on + strand, within ABZR87_RS16740at 106.622 kb on - strand, within ABZR87_RS16740at 106.622 kb on - strand, within ABZR87_RS16740at 106.627 kb on + strand, within ABZR87_RS16740at 106.627 kb on + strand, within ABZR87_RS16740at 106.633 kb on + strand, within ABZR87_RS16740at 106.633 kb on + strand, within ABZR87_RS16740at 106.633 kb on + strand, within ABZR87_RS16740at 106.633 kb on + strand, within ABZR87_RS16740at 106.633 kb on + strand, within ABZR87_RS16740at 106.634 kb on - strand, within ABZR87_RS16740at 106.634 kb on - strand, within ABZR87_RS16740at 106.634 kb on - strand, within ABZR87_RS16740at 106.843 kb on + strand, within ABZR87_RS16740at 106.843 kb on + strand, within ABZR87_RS16740at 106.844 kb on - strand, within ABZR87_RS16740at 106.844 kb on - strand, within ABZR87_RS16740at 106.844 kb on - strand, within ABZR87_RS16740at 106.939 kb on + strand, within ABZR87_RS16740at 106.979 kb on + strandat 106.980 kb on - strandat 106.980 kb on - strandat 106.980 kb on - strandat 107.127 kb on - strandat 107.174 kb on + strandat 107.183 kb on + strandat 107.183 kb on + strandat 107.184 kb on - strandat 107.184 kb on - strandat 107.189 kb on + strandat 107.190 kb on - strandat 107.190 kb on - strandat 107.190 kb on - strandat 107.292 kb on - strand, within ABZR87_RS16745at 107.307 kb on - strand, within ABZR87_RS16745at 107.307 kb on - strand, within ABZR87_RS16745at 107.350 kb on - strand, within ABZR87_RS16745at 107.481 kb on - strand, within ABZR87_RS16745at 107.481 kb on - strand, within ABZR87_RS16745at 107.806 kb on + strand, within ABZR87_RS16745at 107.806 kb on + strand, within ABZR87_RS16745at 107.807 kb on - strand, within ABZR87_RS16745at 107.807 kb on - strand, within ABZR87_RS16745at 107.807 kb on - strand, within ABZR87_RS16745at 107.879 kb on + strand, within ABZR87_RS16745at 107.880 kb on - strand, within ABZR87_RS16745at 107.880 kb on - strand, within ABZR87_RS16745at 107.880 kb on - strand, within ABZR87_RS16745at 107.880 kb on - strand, within ABZR87_RS16745at 107.880 kb on - strand, within ABZR87_RS16745at 107.922 kb on - strand, within ABZR87_RS16745at 107.922 kb on - strand, within ABZR87_RS16745at 107.922 kb on - strand, within ABZR87_RS16745at 108.083 kb on + strandat 108.083 kb on + strandat 108.098 kb on + strandat 108.099 kb on - strandat 108.099 kb on - strandat 108.179 kb on - strandat 108.179 kb on - strandat 108.179 kb on - strandat 108.313 kb on + strandat 108.314 kb on - strandat 108.433 kb on + strand, within ABZR87_RS16750at 108.434 kb on - strand, within ABZR87_RS16750at 108.434 kb on - strand, within ABZR87_RS16750at 108.590 kb on - strand, within ABZR87_RS16750at 108.590 kb on - strand, within ABZR87_RS16750at 108.590 kb on - strand, within ABZR87_RS16750at 108.616 kb on + strand, within ABZR87_RS16750at 108.616 kb on + strand, within ABZR87_RS16750at 108.616 kb on + strand, within ABZR87_RS16750at 108.616 kb on + strand, within ABZR87_RS16750at 108.617 kb on - strand, within ABZR87_RS16750at 108.617 kb on - strand, within ABZR87_RS16750at 108.617 kb on - strand, within ABZR87_RS16750at 108.617 kb on - strand, within ABZR87_RS16750at 108.617 kb on - strand, within ABZR87_RS16750at 108.617 kb on - strand, within ABZR87_RS16750at 108.743 kb on - strand, within ABZR87_RS16750at 108.743 kb on - strand, within ABZR87_RS16750at 108.915 kb on + strand, within ABZR87_RS16750

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB
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106,249 + ABZR87_RS16740 0.29 -2.1
106,250 - ABZR87_RS16740 0.29 +0.8
106,333 + ABZR87_RS16740 0.36 -0.5
106,420 + ABZR87_RS16740 0.44 -2.0
106,420 + ABZR87_RS16740 0.44 -1.4
106,420 + ABZR87_RS16740 0.44 -0.7
106,420 + ABZR87_RS16740 0.44 -0.8
106,421 - ABZR87_RS16740 0.44 +0.7
106,421 - ABZR87_RS16740 0.44 -0.2
106,489 + ABZR87_RS16740 0.50 -1.2
106,489 + ABZR87_RS16740 0.50 -0.5
106,621 + ABZR87_RS16740 0.61 -1.0
106,622 - ABZR87_RS16740 0.61 -0.6
106,622 - ABZR87_RS16740 0.61 -0.2
106,627 + ABZR87_RS16740 0.61 -2.4
106,627 + ABZR87_RS16740 0.61 -0.4
106,633 + ABZR87_RS16740 0.62 -1.0
106,633 + ABZR87_RS16740 0.62 -0.0
106,633 + ABZR87_RS16740 0.62 -1.8
106,633 + ABZR87_RS16740 0.62 -1.0
106,633 + ABZR87_RS16740 0.62 -1.6
106,634 - ABZR87_RS16740 0.62 -1.9
106,634 - ABZR87_RS16740 0.62 -1.0
106,634 - ABZR87_RS16740 0.62 +0.4
106,843 + ABZR87_RS16740 0.80 -2.0
106,843 + ABZR87_RS16740 0.80 -2.2
106,844 - ABZR87_RS16740 0.80 -0.8
106,844 - ABZR87_RS16740 0.80 -1.9
106,844 - ABZR87_RS16740 0.80 +0.4
106,939 + ABZR87_RS16740 0.88 +0.3
106,979 + -1.5
106,980 - +0.1
106,980 - -0.4
106,980 - -0.1
107,127 - +0.3
107,174 + -0.9
107,183 + -0.6
107,183 + -0.9
107,184 - -0.1
107,184 - +1.4
107,189 + -0.2
107,190 - +0.6
107,190 - -0.2
107,190 - -1.6
107,292 - ABZR87_RS16745 0.19 -0.3
107,307 - ABZR87_RS16745 0.20 +0.4
107,307 - ABZR87_RS16745 0.20 +0.5
107,350 - ABZR87_RS16745 0.25 -0.1
107,481 - ABZR87_RS16745 0.40 -0.0
107,481 - ABZR87_RS16745 0.40 -0.4
107,806 + ABZR87_RS16745 0.76 +0.5
107,806 + ABZR87_RS16745 0.76 +0.0
107,807 - ABZR87_RS16745 0.76 +0.1
107,807 - ABZR87_RS16745 0.76 +0.2
107,807 - ABZR87_RS16745 0.76 -1.1
107,879 + ABZR87_RS16745 0.84 +0.0
107,880 - ABZR87_RS16745 0.84 +0.2
107,880 - ABZR87_RS16745 0.84 -0.4
107,880 - ABZR87_RS16745 0.84 +1.1
107,880 - ABZR87_RS16745 0.84 +0.5
107,880 - ABZR87_RS16745 0.84 +0.0
107,922 - ABZR87_RS16745 0.89 -0.2
107,922 - ABZR87_RS16745 0.89 +1.1
107,922 - ABZR87_RS16745 0.89 +0.2
108,083 + -0.5
108,083 + +0.4
108,098 + -0.2
108,099 - -0.0
108,099 - +0.2
108,179 - -0.5
108,179 - +0.3
108,179 - -0.7
108,313 + -0.2
108,314 - -1.4
108,433 + ABZR87_RS16750 0.11 -1.8
108,434 - ABZR87_RS16750 0.11 +0.6
108,434 - ABZR87_RS16750 0.11 +0.2
108,590 - ABZR87_RS16750 0.19 -2.0
108,590 - ABZR87_RS16750 0.19 +0.0
108,590 - ABZR87_RS16750 0.19 +0.6
108,616 + ABZR87_RS16750 0.20 +0.1
108,616 + ABZR87_RS16750 0.20 +0.8
108,616 + ABZR87_RS16750 0.20 +1.3
108,616 + ABZR87_RS16750 0.20 -1.0
108,617 - ABZR87_RS16750 0.21 +0.7
108,617 - ABZR87_RS16750 0.21 -0.0
108,617 - ABZR87_RS16750 0.21 +0.7
108,617 - ABZR87_RS16750 0.21 -0.3
108,617 - ABZR87_RS16750 0.21 +0.3
108,617 - ABZR87_RS16750 0.21 -0.3
108,743 - ABZR87_RS16750 0.27 +0.4
108,743 - ABZR87_RS16750 0.27 +0.3
108,915 + ABZR87_RS16750 0.36 +0.2

Or see this region's nucleotide sequence