Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16270

Experiment: no_plant_soil sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16265 and ABZR87_RS16270 are separated by 78 nucleotidesABZR87_RS16270 and ABZR87_RS16275 are separated by 415 nucleotides ABZR87_RS16265: ABZR87_RS16265 - replication protein RepA, at 1 to 1,077 _RS16265 ABZR87_RS16270: ABZR87_RS16270 - cold-shock protein, at 1,156 to 1,359 _RS16270 ABZR87_RS16275: ABZR87_RS16275 - ParA family protein, at 1,775 to 2,443 _RS16275 Position (kb) 1 2Strain fitness (log2 ratio) -2 -1 0 1at 1.157 kb on + strandat 1.158 kb on - strandat 1.158 kb on - strandat 1.333 kb on - strand, within ABZR87_RS16270at 1.348 kb on - strandat 1.445 kb on + strandat 1.445 kb on + strandat 1.470 kb on + strandat 1.471 kb on - strandat 1.471 kb on - strandat 1.471 kb on - strandat 1.534 kb on - strandat 1.534 kb on - strandat 1.548 kb on + strandat 1.549 kb on - strandat 1.556 kb on + strandat 1.556 kb on + strandat 1.556 kb on + strandat 1.556 kb on + strandat 1.567 kb on + strandat 1.567 kb on + strandat 1.567 kb on + strandat 1.567 kb on + strandat 1.567 kb on + strandat 1.568 kb on - strandat 1.568 kb on - strandat 1.568 kb on - strandat 1.589 kb on + strandat 1.589 kb on + strandat 1.589 kb on + strandat 1.589 kb on + strandat 1.589 kb on + strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.593 kb on + strandat 1.593 kb on + strandat 1.594 kb on - strandat 1.594 kb on - strandat 1.594 kb on - strandat 1.613 kb on + strandat 1.614 kb on - strandat 1.687 kb on - strandat 1.687 kb on - strandat 1.700 kb on + strandat 1.701 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB
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1,157 + -1.0
1,158 - -0.7
1,158 - -1.5
1,333 - ABZR87_RS16270 0.87 -1.1
1,348 - -1.0
1,445 + -0.5
1,445 + +0.8
1,470 + -1.9
1,471 - -1.3
1,471 - +0.5
1,471 - +0.5
1,534 - -0.2
1,534 - -0.9
1,548 + -0.4
1,549 - -0.4
1,556 + -0.3
1,556 + -0.1
1,556 + -0.7
1,556 + +1.1
1,567 + -1.4
1,567 + -0.0
1,567 + -0.3
1,567 + -0.1
1,567 + +0.3
1,568 - +0.0
1,568 - +1.1
1,568 - +0.1
1,589 + +0.2
1,589 + -0.9
1,589 + -0.1
1,589 + +0.2
1,589 + -1.2
1,590 - -1.1
1,590 - +0.1
1,590 - -0.1
1,590 - +0.3
1,590 - -0.3
1,590 - -0.1
1,590 - -1.0
1,590 - -0.8
1,590 - -0.1
1,590 - -1.0
1,593 + -0.3
1,593 + -0.0
1,594 - +0.0
1,594 - -0.7
1,594 - +0.4
1,613 + +0.1
1,614 - -0.0
1,687 - +0.9
1,687 - -0.1
1,700 + -0.5
1,701 - +0.5

Or see this region's nucleotide sequence