Experiment: no_plant_soil sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04110 and ABZR87_RS04115 are separated by 17 nucleotides ABZR87_RS04115 and ABZR87_RS04120 are separated by 37 nucleotides ABZR87_RS04120 and ABZR87_RS04125 overlap by 1 nucleotides
ABZR87_RS04110: ABZR87_RS04110 - ParB/RepB/Spo0J family partition protein, at 861,757 to 862,668
_RS04110
ABZR87_RS04115: ABZR87_RS04115 - ParA family protein, at 862,686 to 863,471
_RS04115
ABZR87_RS04120: ABZR87_RS04120 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 863,509 to 864,177
_RS04120
ABZR87_RS04125: ABZR87_RS04125 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 864,177 to 866,126
_RS04125
Position (kb) 862
863
864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 862.747 kb on + strand at 862.747 kb on + strand at 863.290 kb on + strand, within ABZR87_RS04115 at 863.316 kb on - strand, within ABZR87_RS04115 at 863.463 kb on - strand at 863.497 kb on + strand at 863.497 kb on + strand at 863.497 kb on + strand at 863.497 kb on + strand at 863.732 kb on + strand, within ABZR87_RS04120 at 864.043 kb on - strand, within ABZR87_RS04120 at 864.045 kb on - strand, within ABZR87_RS04120 at 864.045 kb on - strand, within ABZR87_RS04120 at 864.045 kb on - strand, within ABZR87_RS04120 at 864.078 kb on - strand, within ABZR87_RS04120 at 864.078 kb on - strand, within ABZR87_RS04120 at 864.078 kb on - strand, within ABZR87_RS04120 at 864.078 kb on - strand, within ABZR87_RS04120 at 864.446 kb on - strand, within ABZR87_RS04125 at 864.446 kb on - strand, within ABZR87_RS04125 at 864.446 kb on - strand, within ABZR87_RS04125 at 864.446 kb on - strand, within ABZR87_RS04125 at 864.455 kb on - strand, within ABZR87_RS04125 at 864.455 kb on - strand, within ABZR87_RS04125 at 864.455 kb on - strand, within ABZR87_RS04125
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB remove 862,747 + -0.1 862,747 + +1.7 863,290 + ABZR87_RS04115 0.77 +0.7 863,316 - ABZR87_RS04115 0.80 +0.7 863,463 - +1.7 863,497 + +0.2 863,497 + -2.8 863,497 + -0.1 863,497 + -2.1 863,732 + ABZR87_RS04120 0.33 -0.1 864,043 - ABZR87_RS04120 0.80 -0.2 864,045 - ABZR87_RS04120 0.80 -1.6 864,045 - ABZR87_RS04120 0.80 +0.6 864,045 - ABZR87_RS04120 0.80 +1.3 864,078 - ABZR87_RS04120 0.85 +0.4 864,078 - ABZR87_RS04120 0.85 -0.8 864,078 - ABZR87_RS04120 0.85 -0.4 864,078 - ABZR87_RS04120 0.85 -0.5 864,446 - ABZR87_RS04125 0.14 -0.3 864,446 - ABZR87_RS04125 0.14 +0.7 864,446 - ABZR87_RS04125 0.14 +0.4 864,446 - ABZR87_RS04125 0.14 +1.7 864,455 - ABZR87_RS04125 0.14 +2.7 864,455 - ABZR87_RS04125 0.14 +1.4 864,455 - ABZR87_RS04125 0.14 -0.1
Or see this region's nucleotide sequence