Experiment: no_plant_soil sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03970 and ABZR87_RS03975 are separated by 716 nucleotides ABZR87_RS03975 and ABZR87_RS03980 are separated by 590 nucleotides
ABZR87_RS03970: ABZR87_RS03970 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 827,991 to 831,983
_RS03970
ABZR87_RS03975: ABZR87_RS03975 - primosomal protein N', at 832,700 to 834,997
_RS03975
ABZR87_RS03980: ABZR87_RS03980 - uroporphyrinogen decarboxylase, at 835,588 to 836,682
_RS03980
Position (kb) 832
833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 831.865 kb on + strand at 831.865 kb on + strand at 831.865 kb on + strand at 831.866 kb on - strand at 831.866 kb on - strand at 831.866 kb on - strand at 831.866 kb on - strand at 831.866 kb on - strand at 831.866 kb on - strand at 831.977 kb on + strand at 831.977 kb on + strand at 831.977 kb on + strand at 831.978 kb on - strand at 831.992 kb on + strand at 831.993 kb on + strand at 832.043 kb on + strand at 832.043 kb on + strand at 832.043 kb on + strand at 832.043 kb on + strand at 832.043 kb on + strand at 832.044 kb on - strand at 832.044 kb on - strand at 832.071 kb on + strand at 832.071 kb on + strand at 832.072 kb on - strand at 832.072 kb on - strand at 832.098 kb on + strand at 832.098 kb on + strand at 832.099 kb on - strand at 832.149 kb on - strand at 832.149 kb on - strand at 834.957 kb on + strand at 835.127 kb on + strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.128 kb on - strand at 835.130 kb on + strand at 835.130 kb on + strand at 835.130 kb on + strand at 835.130 kb on + strand at 835.131 kb on - strand at 835.131 kb on - strand at 835.131 kb on - strand at 835.141 kb on + strand at 835.141 kb on + strand at 835.142 kb on - strand at 835.142 kb on - strand at 835.179 kb on + strand at 835.180 kb on - strand at 835.199 kb on - strand at 835.258 kb on - strand at 835.271 kb on + strand at 835.272 kb on - strand at 835.272 kb on - strand at 835.309 kb on + strand at 835.309 kb on + strand at 835.309 kb on + strand at 835.310 kb on - strand at 835.377 kb on + strand at 835.377 kb on + strand at 835.377 kb on + strand at 835.377 kb on + strand at 835.378 kb on - strand at 835.378 kb on - strand at 835.401 kb on + strand at 835.402 kb on - strand at 835.402 kb on - strand at 835.423 kb on - strand at 835.472 kb on + strand at 835.486 kb on + strand at 835.487 kb on - strand at 835.487 kb on - strand at 835.487 kb on - strand at 835.558 kb on + strand at 835.589 kb on + strand at 835.590 kb on - strand at 835.590 kb on - strand at 835.590 kb on - strand at 835.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB remove 831,865 + -0.4 831,865 + -0.5 831,865 + -0.1 831,866 - -0.1 831,866 - +0.2 831,866 - -0.3 831,866 - -1.3 831,866 - +0.7 831,866 - -0.0 831,977 + -0.3 831,977 + -0.1 831,977 + -1.6 831,978 - -0.0 831,992 + -0.7 831,993 + +1.1 832,043 + +0.2 832,043 + -0.7 832,043 + -0.4 832,043 + -1.3 832,043 + +0.2 832,044 - -0.1 832,044 - -2.4 832,071 + -0.8 832,071 + +0.6 832,072 - +1.4 832,072 - -0.1 832,098 + +0.5 832,098 + +0.4 832,099 - -0.6 832,149 - -0.1 832,149 - +1.0 834,957 + -1.3 835,127 + -0.2 835,128 - -0.7 835,128 - -0.6 835,128 - +0.3 835,128 - -1.0 835,128 - +0.3 835,130 + -2.2 835,130 + +0.5 835,130 + -0.2 835,130 + -0.2 835,131 - +0.4 835,131 - +0.6 835,131 - -0.0 835,141 + +0.3 835,141 + -2.9 835,142 - -0.5 835,142 - -0.6 835,179 + -0.1 835,180 - -0.1 835,199 - -1.6 835,258 - +0.2 835,271 + -0.8 835,272 - -0.6 835,272 - -0.7 835,309 + -1.1 835,309 + -0.4 835,309 + +0.1 835,310 - -0.9 835,377 + -0.6 835,377 + +1.0 835,377 + -0.3 835,377 + +0.3 835,378 - -0.4 835,378 - -0.5 835,401 + +0.4 835,402 - +0.2 835,402 - +0.3 835,423 - +0.3 835,472 + -0.8 835,486 + -0.4 835,487 - -0.5 835,487 - +0.5 835,487 - +0.2 835,558 + +0.0 835,589 + +0.6 835,590 - +0.5 835,590 - -0.0 835,590 - -0.2 835,590 - +0.1
Or see this region's nucleotide sequence