Experiment: no_plant_soil sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03925 and ABZR87_RS03930 are separated by 47 nucleotides ABZR87_RS03930 and ABZR87_RS03935 are separated by 84 nucleotides ABZR87_RS03935 and ABZR87_RS03940 are separated by 149 nucleotides
ABZR87_RS03925: ABZR87_RS03925 - glycine cleavage system aminomethyltransferase GcvT, at 814,788 to 815,915
_RS03925
ABZR87_RS03930: ABZR87_RS03930 - glycine cleavage system protein GcvH, at 815,963 to 816,343
_RS03930
ABZR87_RS03935: ABZR87_RS03935 - aminomethyl-transferring glycine dehydrogenase, at 816,428 to 819,367
_RS03935
ABZR87_RS03940: ABZR87_RS03940 - L-serine ammonia-lyase, at 819,517 to 820,893
_RS03940
Position (kb) 816
817
818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 815.830 kb on + strand at 815.830 kb on + strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.873 kb on + strand at 815.874 kb on - strand at 815.874 kb on - strand at 815.938 kb on + strand at 815.938 kb on + strand at 815.938 kb on + strand at 815.938 kb on + strand at 815.939 kb on - strand at 815.939 kb on - strand at 815.990 kb on + strand at 815.990 kb on + strand at 815.991 kb on - strand at 815.991 kb on - strand at 815.991 kb on - strand at 815.991 kb on - strand at 816.251 kb on + strand, within ABZR87_RS03930 at 816.251 kb on + strand, within ABZR87_RS03930 at 816.252 kb on - strand, within ABZR87_RS03930 at 816.323 kb on + strand at 816.324 kb on - strand at 816.324 kb on - strand at 816.569 kb on + strand at 816.569 kb on + strand at 816.569 kb on + strand at 816.570 kb on - strand at 816.740 kb on + strand, within ABZR87_RS03935 at 816.741 kb on - strand, within ABZR87_RS03935 at 816.741 kb on - strand, within ABZR87_RS03935 at 816.741 kb on - strand, within ABZR87_RS03935 at 816.741 kb on - strand, within ABZR87_RS03935 at 816.741 kb on - strand, within ABZR87_RS03935 at 816.743 kb on + strand, within ABZR87_RS03935 at 816.743 kb on + strand, within ABZR87_RS03935 at 816.744 kb on - strand, within ABZR87_RS03935 at 816.744 kb on - strand, within ABZR87_RS03935 at 816.800 kb on + strand, within ABZR87_RS03935 at 816.809 kb on + strand, within ABZR87_RS03935 at 816.809 kb on + strand, within ABZR87_RS03935 at 816.809 kb on + strand, within ABZR87_RS03935 at 816.810 kb on - strand, within ABZR87_RS03935 at 816.810 kb on - strand, within ABZR87_RS03935 at 816.810 kb on - strand, within ABZR87_RS03935 at 816.810 kb on - strand, within ABZR87_RS03935 at 817.124 kb on + strand, within ABZR87_RS03935 at 817.125 kb on - strand, within ABZR87_RS03935 at 817.166 kb on + strand, within ABZR87_RS03935 at 817.166 kb on + strand, within ABZR87_RS03935 at 817.167 kb on - strand, within ABZR87_RS03935 at 817.337 kb on + strand, within ABZR87_RS03935 at 817.338 kb on - strand, within ABZR87_RS03935 at 817.338 kb on - strand, within ABZR87_RS03935 at 817.338 kb on - strand, within ABZR87_RS03935 at 817.338 kb on - strand, within ABZR87_RS03935 at 817.487 kb on - strand, within ABZR87_RS03935 at 817.523 kb on + strand, within ABZR87_RS03935 at 817.524 kb on - strand, within ABZR87_RS03935 at 817.524 kb on - strand, within ABZR87_RS03935 at 817.524 kb on - strand, within ABZR87_RS03935 at 817.524 kb on - strand, within ABZR87_RS03935 at 817.532 kb on + strand, within ABZR87_RS03935 at 817.532 kb on + strand, within ABZR87_RS03935 at 817.533 kb on - strand, within ABZR87_RS03935 at 817.620 kb on - strand, within ABZR87_RS03935 at 817.868 kb on + strand, within ABZR87_RS03935 at 817.869 kb on - strand, within ABZR87_RS03935 at 817.869 kb on - strand, within ABZR87_RS03935 at 817.869 kb on - strand, within ABZR87_RS03935 at 817.899 kb on - strand, within ABZR87_RS03935 at 818.114 kb on + strand, within ABZR87_RS03935 at 818.210 kb on + strand, within ABZR87_RS03935 at 818.210 kb on + strand, within ABZR87_RS03935 at 818.210 kb on + strand, within ABZR87_RS03935 at 818.238 kb on - strand, within ABZR87_RS03935 at 818.300 kb on - strand, within ABZR87_RS03935 at 818.300 kb on - strand, within ABZR87_RS03935 at 818.438 kb on + strand, within ABZR87_RS03935 at 818.438 kb on + strand, within ABZR87_RS03935 at 818.438 kb on + strand, within ABZR87_RS03935 at 818.439 kb on - strand, within ABZR87_RS03935 at 818.516 kb on + strand, within ABZR87_RS03935 at 818.516 kb on + strand, within ABZR87_RS03935 at 818.517 kb on - strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.849 kb on + strand, within ABZR87_RS03935 at 818.849 kb on + strand, within ABZR87_RS03935 at 818.849 kb on + strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.874 kb on - strand, within ABZR87_RS03935 at 818.876 kb on + strand, within ABZR87_RS03935 at 818.877 kb on - strand, within ABZR87_RS03935 at 818.888 kb on + strand, within ABZR87_RS03935 at 818.888 kb on + strand, within ABZR87_RS03935 at 818.888 kb on + strand, within ABZR87_RS03935 at 818.888 kb on + strand, within ABZR87_RS03935 at 818.889 kb on - strand, within ABZR87_RS03935 at 819.224 kb on + strand at 819.224 kb on + strand at 819.225 kb on - strand at 819.225 kb on - strand at 819.225 kb on - strand at 819.275 kb on + strand at 819.275 kb on + strand at 819.275 kb on + strand at 819.276 kb on - strand at 819.276 kb on - strand at 819.276 kb on - strand at 819.308 kb on + strand at 819.365 kb on + strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.511 kb on + strand at 819.512 kb on - strand at 819.633 kb on - strand at 819.633 kb on - strand at 819.633 kb on - strand at 819.633 kb on - strand at 819.633 kb on - strand at 819.667 kb on + strand, within ABZR87_RS03940 at 819.667 kb on + strand, within ABZR87_RS03940 at 819.667 kb on + strand, within ABZR87_RS03940 at 819.668 kb on - strand, within ABZR87_RS03940 at 819.668 kb on - strand, within ABZR87_RS03940 at 819.668 kb on - strand, within ABZR87_RS03940 at 819.668 kb on - strand, within ABZR87_RS03940 at 819.862 kb on + strand, within ABZR87_RS03940 at 819.863 kb on - strand, within ABZR87_RS03940 at 819.863 kb on - strand, within ABZR87_RS03940 at 819.950 kb on - strand, within ABZR87_RS03940 at 819.950 kb on - strand, within ABZR87_RS03940 at 820.112 kb on - strand, within ABZR87_RS03940 at 820.255 kb on + strand, within ABZR87_RS03940 at 820.255 kb on + strand, within ABZR87_RS03940 at 820.256 kb on - strand, within ABZR87_RS03940 at 820.327 kb on + strand, within ABZR87_RS03940 at 820.327 kb on + strand, within ABZR87_RS03940 at 820.327 kb on + strand, within ABZR87_RS03940 at 820.328 kb on - strand, within ABZR87_RS03940 at 820.328 kb on - strand, within ABZR87_RS03940
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB remove 815,830 + -0.6 815,830 + +0.2 815,831 - -1.2 815,831 - -2.8 815,831 - -0.2 815,831 - -0.1 815,831 - +0.2 815,831 - +0.3 815,831 - +0.2 815,873 + -0.6 815,874 - +0.0 815,874 - -0.2 815,938 + -0.1 815,938 + -1.0 815,938 + -1.8 815,938 + -0.7 815,939 - -0.1 815,939 - -0.6 815,990 + -1.0 815,990 + -0.4 815,991 - -1.0 815,991 - +0.9 815,991 - -1.1 815,991 - -1.4 816,251 + ABZR87_RS03930 0.76 -0.4 816,251 + ABZR87_RS03930 0.76 +0.5 816,252 - ABZR87_RS03930 0.76 -1.4 816,323 + -0.6 816,324 - -0.5 816,324 - -0.4 816,569 + -2.0 816,569 + -0.2 816,569 + +1.1 816,570 - -0.3 816,740 + ABZR87_RS03935 0.11 -1.3 816,741 - ABZR87_RS03935 0.11 -0.5 816,741 - ABZR87_RS03935 0.11 +1.4 816,741 - ABZR87_RS03935 0.11 +0.8 816,741 - ABZR87_RS03935 0.11 -0.4 816,741 - ABZR87_RS03935 0.11 -0.3 816,743 + ABZR87_RS03935 0.11 -0.3 816,743 + ABZR87_RS03935 0.11 -0.3 816,744 - ABZR87_RS03935 0.11 -1.1 816,744 - ABZR87_RS03935 0.11 -0.1 816,800 + ABZR87_RS03935 0.13 -0.6 816,809 + ABZR87_RS03935 0.13 -1.6 816,809 + ABZR87_RS03935 0.13 -2.1 816,809 + ABZR87_RS03935 0.13 -0.7 816,810 - ABZR87_RS03935 0.13 -2.9 816,810 - ABZR87_RS03935 0.13 -0.8 816,810 - ABZR87_RS03935 0.13 -0.6 816,810 - ABZR87_RS03935 0.13 +0.6 817,124 + ABZR87_RS03935 0.24 -1.5 817,125 - ABZR87_RS03935 0.24 +0.2 817,166 + ABZR87_RS03935 0.25 -0.6 817,166 + ABZR87_RS03935 0.25 -2.3 817,167 - ABZR87_RS03935 0.25 +0.2 817,337 + ABZR87_RS03935 0.31 -1.0 817,338 - ABZR87_RS03935 0.31 -1.7 817,338 - ABZR87_RS03935 0.31 +0.6 817,338 - ABZR87_RS03935 0.31 +0.1 817,338 - ABZR87_RS03935 0.31 -0.7 817,487 - ABZR87_RS03935 0.36 -0.2 817,523 + ABZR87_RS03935 0.37 -0.5 817,524 - ABZR87_RS03935 0.37 -1.0 817,524 - ABZR87_RS03935 0.37 -0.4 817,524 - ABZR87_RS03935 0.37 -0.4 817,524 - ABZR87_RS03935 0.37 -0.6 817,532 + ABZR87_RS03935 0.38 -0.8 817,532 + ABZR87_RS03935 0.38 -0.2 817,533 - ABZR87_RS03935 0.38 -0.3 817,620 - ABZR87_RS03935 0.41 +0.5 817,868 + ABZR87_RS03935 0.49 -0.6 817,869 - ABZR87_RS03935 0.49 -0.7 817,869 - ABZR87_RS03935 0.49 -0.8 817,869 - ABZR87_RS03935 0.49 -0.7 817,899 - ABZR87_RS03935 0.50 -1.7 818,114 + ABZR87_RS03935 0.57 -0.3 818,210 + ABZR87_RS03935 0.61 -0.5 818,210 + ABZR87_RS03935 0.61 -0.8 818,210 + ABZR87_RS03935 0.61 -1.4 818,238 - ABZR87_RS03935 0.62 -1.1 818,300 - ABZR87_RS03935 0.64 -0.3 818,300 - ABZR87_RS03935 0.64 -0.6 818,438 + ABZR87_RS03935 0.68 -0.0 818,438 + ABZR87_RS03935 0.68 -0.9 818,438 + ABZR87_RS03935 0.68 -0.9 818,439 - ABZR87_RS03935 0.68 +0.9 818,516 + ABZR87_RS03935 0.71 +0.3 818,516 + ABZR87_RS03935 0.71 +0.0 818,517 - ABZR87_RS03935 0.71 +0.5 818,783 + ABZR87_RS03935 0.80 -2.8 818,783 + ABZR87_RS03935 0.80 -0.1 818,783 + ABZR87_RS03935 0.80 -0.7 818,783 + ABZR87_RS03935 0.80 -0.1 818,783 + ABZR87_RS03935 0.80 -1.7 818,783 + ABZR87_RS03935 0.80 -1.1 818,784 - ABZR87_RS03935 0.80 -0.2 818,784 - ABZR87_RS03935 0.80 -0.3 818,784 - ABZR87_RS03935 0.80 +0.1 818,784 - ABZR87_RS03935 0.80 -0.5 818,784 - ABZR87_RS03935 0.80 -0.3 818,784 - ABZR87_RS03935 0.80 -2.1 818,784 - ABZR87_RS03935 0.80 -1.7 818,849 + ABZR87_RS03935 0.82 +0.3 818,849 + ABZR87_RS03935 0.82 -0.6 818,849 + ABZR87_RS03935 0.82 -1.3 818,850 - ABZR87_RS03935 0.82 -0.9 818,850 - ABZR87_RS03935 0.82 -0.1 818,850 - ABZR87_RS03935 0.82 -0.7 818,850 - ABZR87_RS03935 0.82 -0.0 818,850 - ABZR87_RS03935 0.82 -1.8 818,850 - ABZR87_RS03935 0.82 -0.5 818,874 - ABZR87_RS03935 0.83 -1.2 818,876 + ABZR87_RS03935 0.83 -0.2 818,877 - ABZR87_RS03935 0.83 -0.6 818,888 + ABZR87_RS03935 0.84 +0.5 818,888 + ABZR87_RS03935 0.84 +0.5 818,888 + ABZR87_RS03935 0.84 -1.1 818,888 + ABZR87_RS03935 0.84 -1.0 818,889 - ABZR87_RS03935 0.84 -0.3 819,224 + -1.5 819,224 + -1.1 819,225 - +0.2 819,225 - -2.2 819,225 - +1.3 819,275 + -0.5 819,275 + -0.4 819,275 + -0.7 819,276 - -0.7 819,276 - +0.0 819,276 - -0.1 819,308 + -0.1 819,365 + +0.1 819,366 - +0.9 819,366 - -0.1 819,366 - -0.4 819,366 - -1.1 819,366 - -0.9 819,366 - -0.2 819,366 - -0.5 819,511 + -1.9 819,512 - +1.2 819,633 - +1.2 819,633 - -0.7 819,633 - +0.5 819,633 - -1.4 819,633 - +0.1 819,667 + ABZR87_RS03940 0.11 -0.1 819,667 + ABZR87_RS03940 0.11 -1.8 819,667 + ABZR87_RS03940 0.11 -0.4 819,668 - ABZR87_RS03940 0.11 -0.2 819,668 - ABZR87_RS03940 0.11 -0.5 819,668 - ABZR87_RS03940 0.11 -0.3 819,668 - ABZR87_RS03940 0.11 -0.7 819,862 + ABZR87_RS03940 0.25 +0.3 819,863 - ABZR87_RS03940 0.25 -0.2 819,863 - ABZR87_RS03940 0.25 +0.2 819,950 - ABZR87_RS03940 0.31 +0.4 819,950 - ABZR87_RS03940 0.31 -0.4 820,112 - ABZR87_RS03940 0.43 +0.1 820,255 + ABZR87_RS03940 0.54 -0.4 820,255 + ABZR87_RS03940 0.54 -1.3 820,256 - ABZR87_RS03940 0.54 +0.4 820,327 + ABZR87_RS03940 0.59 -0.6 820,327 + ABZR87_RS03940 0.59 +0.0 820,327 + ABZR87_RS03940 0.59 +1.0 820,328 - ABZR87_RS03940 0.59 -0.2 820,328 - ABZR87_RS03940 0.59 -0.7
Or see this region's nucleotide sequence