Experiment: no_plant_soil sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03830 and ABZR87_RS03835 are separated by 273 nucleotides ABZR87_RS03835 and ABZR87_RS03840 are separated by 128 nucleotides
ABZR87_RS03825: ABZR87_RS03825 - MBL fold metallo-hydrolase, at 790,650 to 791,306
_RS03825
ABZR87_RS03830: ABZR87_RS03830 - exonuclease, at 791,303 to 792,031
_RS03830
ABZR87_RS03835: ABZR87_RS03835 - hypothetical protein, at 792,305 to 792,580
_RS03835
ABZR87_RS03840: ABZR87_RS03840 - arsenate reductase (glutaredoxin), at 792,709 to 793,056
_RS03840
Position (kb) 792
793 Strain fitness (log2 ratio) -2
-1
0
1
2 at 791.441 kb on + strand, within ABZR87_RS03830 at 791.441 kb on + strand, within ABZR87_RS03830 at 791.441 kb on + strand, within ABZR87_RS03830 at 791.442 kb on - strand, within ABZR87_RS03830 at 791.442 kb on - strand, within ABZR87_RS03830 at 791.442 kb on - strand, within ABZR87_RS03830 at 791.517 kb on - strand, within ABZR87_RS03830 at 791.664 kb on + strand, within ABZR87_RS03830 at 791.664 kb on + strand, within ABZR87_RS03830 at 791.665 kb on - strand, within ABZR87_RS03830 at 791.679 kb on - strand, within ABZR87_RS03830 at 791.679 kb on - strand, within ABZR87_RS03830 at 791.679 kb on - strand, within ABZR87_RS03830 at 791.762 kb on + strand, within ABZR87_RS03830 at 791.763 kb on - strand, within ABZR87_RS03830 at 791.763 kb on - strand, within ABZR87_RS03830 at 791.763 kb on - strand, within ABZR87_RS03830 at 791.763 kb on - strand, within ABZR87_RS03830 at 791.763 kb on - strand, within ABZR87_RS03830 at 791.912 kb on - strand, within ABZR87_RS03830 at 792.141 kb on + strand at 792.141 kb on + strand at 792.141 kb on + strand at 792.142 kb on - strand at 792.208 kb on + strand at 792.209 kb on - strand at 792.209 kb on - strand at 792.209 kb on - strand at 792.209 kb on - strand at 792.278 kb on + strand at 792.299 kb on - strand at 792.578 kb on + strand at 792.579 kb on - strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.637 kb on + strand at 792.638 kb on - strand at 792.638 kb on - strand at 792.638 kb on - strand at 792.706 kb on + strand at 792.706 kb on + strand at 792.706 kb on + strand at 792.857 kb on + strand, within ABZR87_RS03840 at 792.857 kb on + strand, within ABZR87_RS03840 at 792.857 kb on + strand, within ABZR87_RS03840 at 792.953 kb on + strand, within ABZR87_RS03840 at 792.954 kb on - strand, within ABZR87_RS03840 at 792.954 kb on - strand, within ABZR87_RS03840 at 792.954 kb on - strand, within ABZR87_RS03840 at 792.954 kb on - strand, within ABZR87_RS03840 at 793.046 kb on + strand at 793.047 kb on - strand at 793.047 kb on - strand at 793.102 kb on + strand at 793.103 kb on - strand at 793.103 kb on - strand at 793.103 kb on - strand at 793.103 kb on - strand at 793.103 kb on - strand at 793.236 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB remove 791,441 + ABZR87_RS03830 0.19 +0.0 791,441 + ABZR87_RS03830 0.19 +0.1 791,441 + ABZR87_RS03830 0.19 +0.3 791,442 - ABZR87_RS03830 0.19 +1.6 791,442 - ABZR87_RS03830 0.19 +0.5 791,442 - ABZR87_RS03830 0.19 +0.2 791,517 - ABZR87_RS03830 0.29 +0.9 791,664 + ABZR87_RS03830 0.50 -1.0 791,664 + ABZR87_RS03830 0.50 -0.2 791,665 - ABZR87_RS03830 0.50 -1.1 791,679 - ABZR87_RS03830 0.52 -1.2 791,679 - ABZR87_RS03830 0.52 -1.5 791,679 - ABZR87_RS03830 0.52 +0.4 791,762 + ABZR87_RS03830 0.63 +0.6 791,763 - ABZR87_RS03830 0.63 +2.2 791,763 - ABZR87_RS03830 0.63 +0.4 791,763 - ABZR87_RS03830 0.63 +0.5 791,763 - ABZR87_RS03830 0.63 +0.4 791,763 - ABZR87_RS03830 0.63 +0.9 791,912 - ABZR87_RS03830 0.84 +1.0 792,141 + +1.9 792,141 + +1.1 792,141 + -0.1 792,142 - -0.7 792,208 + -0.6 792,209 - -0.0 792,209 - -0.6 792,209 - -1.3 792,209 - -0.6 792,278 + -0.1 792,299 - +0.8 792,578 + -0.4 792,579 - +0.8 792,637 + -1.4 792,637 + +0.4 792,637 + -0.3 792,637 + +0.3 792,637 + -0.1 792,637 + +0.3 792,637 + -0.9 792,637 + -0.1 792,637 + -0.1 792,637 + -0.3 792,638 - -0.4 792,638 - +0.1 792,638 - +0.6 792,706 + -0.3 792,706 + +0.1 792,706 + +0.1 792,857 + ABZR87_RS03840 0.43 +0.3 792,857 + ABZR87_RS03840 0.43 -0.6 792,857 + ABZR87_RS03840 0.43 -0.8 792,953 + ABZR87_RS03840 0.70 +1.0 792,954 - ABZR87_RS03840 0.70 -0.6 792,954 - ABZR87_RS03840 0.70 +0.4 792,954 - ABZR87_RS03840 0.70 -0.3 792,954 - ABZR87_RS03840 0.70 -0.4 793,046 + -0.2 793,047 - +0.0 793,047 - +0.4 793,102 + +0.1 793,103 - -1.2 793,103 - +0.8 793,103 - -0.1 793,103 - -0.4 793,103 - -0.6 793,236 + -0.3 793,403 + +1.4 793,403 + +0.6 793,403 + -0.0 793,403 + -0.6 793,403 + -0.1 793,403 + +0.5 793,403 + +0.6 793,403 + -0.3 793,403 + +0.9 793,403 + -1.1 793,403 + +0.6 793,403 + -0.3 793,403 + -0.3 793,404 - -1.4 793,404 - -0.8 793,404 - -0.7 793,404 - -0.9 793,404 - -2.6 793,404 - -0.3 793,404 - -0.7 793,404 - +0.4
Or see this region's nucleotide sequence