Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03465

Experiment: no_plant_soil sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03460 and ABZR87_RS03465 are separated by 575 nucleotidesABZR87_RS03465 and ABZR87_RS03470 are separated by 100 nucleotides ABZR87_RS03460: ABZR87_RS03460 - type II secretion system inner membrane protein GspF, at 723,061 to 724,272 _RS03460 ABZR87_RS03465: ABZR87_RS03465 - pyridoxamine 5'-phosphate oxidase family protein, at 724,848 to 725,531 _RS03465 ABZR87_RS03470: ABZR87_RS03470 - PLP-dependent aminotransferase family protein, at 725,632 to 727,101 _RS03470 Position (kb) 724 725 726Strain fitness (log2 ratio) -3 -2 -1 0 1at 723.860 kb on - strand, within ABZR87_RS03460at 724.246 kb on - strandat 724.254 kb on + strandat 724.255 kb on - strandat 724.255 kb on - strandat 724.255 kb on - strandat 724.596 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.906 kb on + strandat 724.907 kb on - strandat 724.907 kb on - strandat 724.907 kb on - strandat 724.907 kb on - strandat 725.141 kb on + strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.142 kb on - strand, within ABZR87_RS03465at 725.147 kb on + strand, within ABZR87_RS03465at 725.148 kb on - strand, within ABZR87_RS03465at 725.197 kb on + strand, within ABZR87_RS03465at 725.197 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.215 kb on + strand, within ABZR87_RS03465at 725.216 kb on - strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.341 kb on + strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.342 kb on - strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.422 kb on + strand, within ABZR87_RS03465at 725.423 kb on - strand, within ABZR87_RS03465at 725.423 kb on - strand, within ABZR87_RS03465at 725.423 kb on - strand, within ABZR87_RS03465at 725.423 kb on - strand, within ABZR87_RS03465at 725.423 kb on - strand, within ABZR87_RS03465at 725.461 kb on + strand, within ABZR87_RS03465at 725.461 kb on + strand, within ABZR87_RS03465at 725.461 kb on + strand, within ABZR87_RS03465at 725.462 kb on - strand, within ABZR87_RS03465at 725.462 kb on - strand, within ABZR87_RS03465at 725.564 kb on + strandat 725.598 kb on + strandat 725.598 kb on + strandat 725.598 kb on + strandat 725.598 kb on + strandat 725.599 kb on - strandat 725.599 kb on - strandat 725.599 kb on - strandat 725.599 kb on - strandat 725.599 kb on - strandat 725.638 kb on + strandat 725.638 kb on + strandat 725.638 kb on + strandat 725.638 kb on + strandat 725.639 kb on - strandat 725.639 kb on - strandat 725.639 kb on - strandat 725.659 kb on + strandat 725.659 kb on + strandat 725.659 kb on + strandat 725.660 kb on - strandat 725.660 kb on - strandat 725.719 kb on + strandat 725.719 kb on + strandat 725.720 kb on - strandat 725.720 kb on - strandat 725.720 kb on - strandat 725.720 kb on - strandat 725.720 kb on - strandat 725.720 kb on - strandat 725.830 kb on + strand, within ABZR87_RS03470at 725.831 kb on - strand, within ABZR87_RS03470at 725.831 kb on - strand, within ABZR87_RS03470at 725.836 kb on + strand, within ABZR87_RS03470at 725.837 kb on - strand, within ABZR87_RS03470at 726.154 kb on + strand, within ABZR87_RS03470at 726.154 kb on + strand, within ABZR87_RS03470at 726.155 kb on - strand, within ABZR87_RS03470at 726.155 kb on - strand, within ABZR87_RS03470at 726.155 kb on - strand, within ABZR87_RS03470at 726.292 kb on + strand, within ABZR87_RS03470at 726.292 kb on + strand, within ABZR87_RS03470at 726.293 kb on - strand, within ABZR87_RS03470at 726.293 kb on - strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.409 kb on + strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.410 kb on - strand, within ABZR87_RS03470at 726.431 kb on - strand, within ABZR87_RS03470at 726.431 kb on - strand, within ABZR87_RS03470at 726.520 kb on + strand, within ABZR87_RS03470at 726.520 kb on + strand, within ABZR87_RS03470at 726.520 kb on + strand, within ABZR87_RS03470at 726.521 kb on - strand, within ABZR87_RS03470

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB
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723,860 - ABZR87_RS03460 0.66 -1.4
724,246 - -2.8
724,254 + -1.4
724,255 - -0.2
724,255 - +0.6
724,255 - -1.2
724,596 + -2.0
724,906 + -0.5
724,906 + +0.1
724,906 + -0.0
724,906 + +0.4
724,907 - -0.5
724,907 - +0.1
724,907 - +0.6
724,907 - -0.0
725,141 + ABZR87_RS03465 0.43 -0.2
725,142 - ABZR87_RS03465 0.43 +0.2
725,142 - ABZR87_RS03465 0.43 -0.3
725,142 - ABZR87_RS03465 0.43 -0.4
725,147 + ABZR87_RS03465 0.44 -0.5
725,148 - ABZR87_RS03465 0.44 -0.6
725,197 + ABZR87_RS03465 0.51 +0.3
725,197 + ABZR87_RS03465 0.51 +0.2
725,215 + ABZR87_RS03465 0.54 +0.4
725,215 + ABZR87_RS03465 0.54 -0.8
725,215 + ABZR87_RS03465 0.54 -0.4
725,216 - ABZR87_RS03465 0.54 -1.2
725,341 + ABZR87_RS03465 0.72 -0.5
725,341 + ABZR87_RS03465 0.72 -0.1
725,341 + ABZR87_RS03465 0.72 -0.2
725,341 + ABZR87_RS03465 0.72 +0.7
725,341 + ABZR87_RS03465 0.72 -0.8
725,341 + ABZR87_RS03465 0.72 -0.8
725,341 + ABZR87_RS03465 0.72 +0.1
725,341 + ABZR87_RS03465 0.72 -0.7
725,341 + ABZR87_RS03465 0.72 -0.9
725,341 + ABZR87_RS03465 0.72 -1.3
725,341 + ABZR87_RS03465 0.72 +0.1
725,341 + ABZR87_RS03465 0.72 +0.8
725,341 + ABZR87_RS03465 0.72 -1.4
725,342 - ABZR87_RS03465 0.72 +0.6
725,342 - ABZR87_RS03465 0.72 +0.7
725,342 - ABZR87_RS03465 0.72 +1.2
725,342 - ABZR87_RS03465 0.72 -0.4
725,342 - ABZR87_RS03465 0.72 +0.2
725,342 - ABZR87_RS03465 0.72 +0.8
725,342 - ABZR87_RS03465 0.72 +0.0
725,342 - ABZR87_RS03465 0.72 -0.6
725,422 + ABZR87_RS03465 0.84 +0.4
725,422 + ABZR87_RS03465 0.84 -0.6
725,422 + ABZR87_RS03465 0.84 +0.5
725,422 + ABZR87_RS03465 0.84 +0.1
725,422 + ABZR87_RS03465 0.84 +0.5
725,422 + ABZR87_RS03465 0.84 -0.3
725,422 + ABZR87_RS03465 0.84 -0.8
725,422 + ABZR87_RS03465 0.84 -0.1
725,422 + ABZR87_RS03465 0.84 +0.4
725,423 - ABZR87_RS03465 0.84 -0.6
725,423 - ABZR87_RS03465 0.84 -0.2
725,423 - ABZR87_RS03465 0.84 +0.3
725,423 - ABZR87_RS03465 0.84 +0.0
725,423 - ABZR87_RS03465 0.84 -1.2
725,461 + ABZR87_RS03465 0.90 +0.2
725,461 + ABZR87_RS03465 0.90 +0.5
725,461 + ABZR87_RS03465 0.90 -0.3
725,462 - ABZR87_RS03465 0.90 -1.1
725,462 - ABZR87_RS03465 0.90 +0.3
725,564 + +1.0
725,598 + +0.4
725,598 + -0.7
725,598 + +0.6
725,598 + -0.4
725,599 - -1.9
725,599 - +0.1
725,599 - -0.1
725,599 - -0.6
725,599 - +0.5
725,638 + +0.1
725,638 + -0.7
725,638 + -0.2
725,638 + +0.6
725,639 - +0.2
725,639 - +0.2
725,639 - +0.0
725,659 + -0.1
725,659 + -0.2
725,659 + -0.9
725,660 - -1.7
725,660 - +0.1
725,719 + +0.3
725,719 + -0.3
725,720 - -0.9
725,720 - -0.1
725,720 - -0.0
725,720 - -0.0
725,720 - -0.5
725,720 - +0.2
725,830 + ABZR87_RS03470 0.13 -0.7
725,831 - ABZR87_RS03470 0.14 -0.2
725,831 - ABZR87_RS03470 0.14 -0.4
725,836 + ABZR87_RS03470 0.14 -0.6
725,837 - ABZR87_RS03470 0.14 -1.0
726,154 + ABZR87_RS03470 0.36 +0.3
726,154 + ABZR87_RS03470 0.36 -0.5
726,155 - ABZR87_RS03470 0.36 +1.1
726,155 - ABZR87_RS03470 0.36 +0.8
726,155 - ABZR87_RS03470 0.36 -0.3
726,292 + ABZR87_RS03470 0.45 +0.4
726,292 + ABZR87_RS03470 0.45 -1.9
726,293 - ABZR87_RS03470 0.45 -0.5
726,293 - ABZR87_RS03470 0.45 -0.2
726,409 + ABZR87_RS03470 0.53 +0.9
726,409 + ABZR87_RS03470 0.53 -0.7
726,409 + ABZR87_RS03470 0.53 -1.4
726,409 + ABZR87_RS03470 0.53 +1.3
726,409 + ABZR87_RS03470 0.53 -0.6
726,409 + ABZR87_RS03470 0.53 +0.6
726,409 + ABZR87_RS03470 0.53 +1.4
726,409 + ABZR87_RS03470 0.53 +0.1
726,409 + ABZR87_RS03470 0.53 -1.0
726,410 - ABZR87_RS03470 0.53 +0.6
726,410 - ABZR87_RS03470 0.53 +0.3
726,410 - ABZR87_RS03470 0.53 +0.3
726,410 - ABZR87_RS03470 0.53 +0.2
726,410 - ABZR87_RS03470 0.53 +0.5
726,410 - ABZR87_RS03470 0.53 +0.7
726,410 - ABZR87_RS03470 0.53 +0.8
726,410 - ABZR87_RS03470 0.53 +0.1
726,431 - ABZR87_RS03470 0.54 -0.6
726,431 - ABZR87_RS03470 0.54 -0.8
726,520 + ABZR87_RS03470 0.60 +0.4
726,520 + ABZR87_RS03470 0.60 -0.6
726,520 + ABZR87_RS03470 0.60 +0.3
726,521 - ABZR87_RS03470 0.60 +0.2

Or see this region's nucleotide sequence