Experiment: no_plant_soil sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02390 and ABZR87_RS02395 are separated by 12 nucleotides ABZR87_RS02395 and ABZR87_RS02400 are separated by 19 nucleotides ABZR87_RS02400 and ABZR87_RS02405 are separated by 420 nucleotides
ABZR87_RS02390: ABZR87_RS02390 - large conductance mechanosensitive channel protein MscL, at 510,229 to 510,657
_RS02390
ABZR87_RS02395: ABZR87_RS02395 - Nif3-like dinuclear metal center hexameric protein, at 510,670 to 511,416
_RS02395
ABZR87_RS02400: ABZR87_RS02400 - Do family serine endopeptidase, at 511,436 to 512,650
_RS02400
ABZR87_RS02405: ABZR87_RS02405 - porin, at 513,071 to 514,177
_RS02405
Position (kb) 511
512
513 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.438 kb on + strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.439 kb on - strand, within ABZR87_RS02390 at 510.528 kb on + strand, within ABZR87_RS02390 at 510.529 kb on - strand, within ABZR87_RS02390 at 510.655 kb on + strand at 510.656 kb on - strand at 510.656 kb on - strand at 510.656 kb on - strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.706 kb on + strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.707 kb on - strand at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.785 kb on + strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.786 kb on - strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.845 kb on + strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.846 kb on - strand, within ABZR87_RS02395 at 510.995 kb on - strand, within ABZR87_RS02395 at 510.995 kb on - strand, within ABZR87_RS02395 at 510.995 kb on - strand, within ABZR87_RS02395 at 511.131 kb on - strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.220 kb on + strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.221 kb on - strand, within ABZR87_RS02395 at 511.311 kb on + strand, within ABZR87_RS02395 at 511.312 kb on - strand, within ABZR87_RS02395 at 511.312 kb on - strand, within ABZR87_RS02395 at 511.336 kb on + strand, within ABZR87_RS02395 at 511.336 kb on + strand, within ABZR87_RS02395 at 511.337 kb on - strand, within ABZR87_RS02395 at 511.337 kb on - strand, within ABZR87_RS02395 at 511.337 kb on - strand, within ABZR87_RS02395 at 511.352 kb on + strand at 511.352 kb on + strand at 511.352 kb on + strand at 511.352 kb on + strand at 511.353 kb on - strand at 511.353 kb on - strand at 511.353 kb on - strand at 511.353 kb on - strand at 511.391 kb on + strand at 511.391 kb on + strand at 511.435 kb on + strand at 511.435 kb on + strand at 511.435 kb on + strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.436 kb on - strand at 511.622 kb on + strand, within ABZR87_RS02400 at 511.623 kb on - strand, within ABZR87_RS02400 at 511.623 kb on - strand, within ABZR87_RS02400 at 511.824 kb on + strand, within ABZR87_RS02400 at 511.824 kb on + strand, within ABZR87_RS02400 at 511.824 kb on + strand, within ABZR87_RS02400 at 511.824 kb on + strand, within ABZR87_RS02400 at 511.825 kb on - strand, within ABZR87_RS02400 at 511.825 kb on - strand, within ABZR87_RS02400 at 511.969 kb on + strand, within ABZR87_RS02400 at 511.970 kb on - strand, within ABZR87_RS02400 at 511.970 kb on - strand, within ABZR87_RS02400 at 511.970 kb on - strand, within ABZR87_RS02400 at 512.204 kb on + strand, within ABZR87_RS02400 at 512.204 kb on + strand, within ABZR87_RS02400 at 512.204 kb on + strand, within ABZR87_RS02400 at 512.204 kb on + strand, within ABZR87_RS02400 at 512.204 kb on + strand, within ABZR87_RS02400 at 512.281 kb on + strand, within ABZR87_RS02400 at 512.281 kb on + strand, within ABZR87_RS02400 at 512.281 kb on + strand, within ABZR87_RS02400 at 512.281 kb on + strand, within ABZR87_RS02400 at 512.281 kb on + strand, within ABZR87_RS02400 at 512.282 kb on - strand, within ABZR87_RS02400 at 512.480 kb on - strand, within ABZR87_RS02400 at 512.490 kb on + strand, within ABZR87_RS02400 at 512.491 kb on - strand, within ABZR87_RS02400 at 512.599 kb on + strand at 512.648 kb on + strand at 512.648 kb on + strand at 512.649 kb on - strand at 512.649 kb on - strand at 512.649 kb on - strand at 512.667 kb on + strand at 512.701 kb on + strand at 512.792 kb on + strand at 512.793 kb on - strand at 512.807 kb on + strand at 512.807 kb on + strand at 512.808 kb on - strand at 512.808 kb on - strand at 512.808 kb on - strand at 512.811 kb on + strand at 512.811 kb on + strand at 512.811 kb on + strand at 512.811 kb on + strand at 512.812 kb on - strand at 512.812 kb on - strand at 512.812 kb on - strand at 512.821 kb on + strand at 512.858 kb on + strand at 512.858 kb on + strand at 512.858 kb on + strand at 512.858 kb on + strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.859 kb on - strand at 512.870 kb on - strand at 512.870 kb on - strand at 512.905 kb on + strand at 512.905 kb on + strand at 512.905 kb on + strand at 512.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB remove 510,438 + ABZR87_RS02390 0.49 -0.3 510,438 + ABZR87_RS02390 0.49 +0.1 510,438 + ABZR87_RS02390 0.49 -0.3 510,438 + ABZR87_RS02390 0.49 -1.0 510,438 + ABZR87_RS02390 0.49 -0.2 510,438 + ABZR87_RS02390 0.49 +0.8 510,438 + ABZR87_RS02390 0.49 +0.9 510,438 + ABZR87_RS02390 0.49 -0.3 510,439 - ABZR87_RS02390 0.49 +0.7 510,439 - ABZR87_RS02390 0.49 -0.3 510,439 - ABZR87_RS02390 0.49 +0.5 510,439 - ABZR87_RS02390 0.49 -0.0 510,439 - ABZR87_RS02390 0.49 -0.4 510,439 - ABZR87_RS02390 0.49 -0.2 510,439 - ABZR87_RS02390 0.49 -0.4 510,439 - ABZR87_RS02390 0.49 -0.0 510,528 + ABZR87_RS02390 0.70 -0.4 510,529 - ABZR87_RS02390 0.70 -0.4 510,655 + +0.5 510,656 - +0.6 510,656 - -1.6 510,656 - +1.5 510,706 + +0.9 510,706 + -0.8 510,706 + -0.6 510,706 + +0.6 510,706 + +0.4 510,707 - +1.5 510,707 - -0.1 510,707 - -1.5 510,707 - +0.2 510,785 + ABZR87_RS02395 0.15 -0.1 510,785 + ABZR87_RS02395 0.15 +0.1 510,785 + ABZR87_RS02395 0.15 +0.0 510,785 + ABZR87_RS02395 0.15 -0.2 510,785 + ABZR87_RS02395 0.15 +0.7 510,785 + ABZR87_RS02395 0.15 -0.5 510,786 - ABZR87_RS02395 0.16 +0.4 510,786 - ABZR87_RS02395 0.16 +0.5 510,786 - ABZR87_RS02395 0.16 -0.0 510,786 - ABZR87_RS02395 0.16 -0.7 510,786 - ABZR87_RS02395 0.16 -0.7 510,786 - ABZR87_RS02395 0.16 -1.0 510,786 - ABZR87_RS02395 0.16 -0.7 510,845 + ABZR87_RS02395 0.23 +0.6 510,845 + ABZR87_RS02395 0.23 +0.5 510,845 + ABZR87_RS02395 0.23 -0.5 510,846 - ABZR87_RS02395 0.24 -2.2 510,846 - ABZR87_RS02395 0.24 -0.6 510,846 - ABZR87_RS02395 0.24 +0.5 510,846 - ABZR87_RS02395 0.24 -0.0 510,846 - ABZR87_RS02395 0.24 +0.7 510,846 - ABZR87_RS02395 0.24 -0.4 510,846 - ABZR87_RS02395 0.24 +0.4 510,846 - ABZR87_RS02395 0.24 +0.5 510,846 - ABZR87_RS02395 0.24 +0.2 510,846 - ABZR87_RS02395 0.24 -0.2 510,995 - ABZR87_RS02395 0.44 +0.8 510,995 - ABZR87_RS02395 0.44 -0.1 510,995 - ABZR87_RS02395 0.44 +0.4 511,131 - ABZR87_RS02395 0.62 -0.5 511,220 + ABZR87_RS02395 0.74 +0.7 511,220 + ABZR87_RS02395 0.74 -0.0 511,220 + ABZR87_RS02395 0.74 +0.1 511,220 + ABZR87_RS02395 0.74 +0.3 511,221 - ABZR87_RS02395 0.74 -1.4 511,221 - ABZR87_RS02395 0.74 -1.1 511,221 - ABZR87_RS02395 0.74 +0.3 511,221 - ABZR87_RS02395 0.74 -0.3 511,311 + ABZR87_RS02395 0.86 -1.8 511,312 - ABZR87_RS02395 0.86 -0.5 511,312 - ABZR87_RS02395 0.86 +0.7 511,336 + ABZR87_RS02395 0.89 +0.1 511,336 + ABZR87_RS02395 0.89 -0.2 511,337 - ABZR87_RS02395 0.89 +0.6 511,337 - ABZR87_RS02395 0.89 +0.2 511,337 - ABZR87_RS02395 0.89 -1.3 511,352 + +0.2 511,352 + +0.3 511,352 + -0.4 511,352 + -0.9 511,353 - +0.6 511,353 - +0.1 511,353 - +0.5 511,353 - +1.6 511,391 + -2.5 511,391 + +0.2 511,435 + -0.1 511,435 + +0.6 511,435 + +0.5 511,436 - +1.0 511,436 - +1.2 511,436 - +0.8 511,436 - +0.1 511,436 - -1.0 511,622 + ABZR87_RS02400 0.15 +0.1 511,623 - ABZR87_RS02400 0.15 +1.2 511,623 - ABZR87_RS02400 0.15 +0.5 511,824 + ABZR87_RS02400 0.32 -0.9 511,824 + ABZR87_RS02400 0.32 -0.2 511,824 + ABZR87_RS02400 0.32 +0.5 511,824 + ABZR87_RS02400 0.32 -0.2 511,825 - ABZR87_RS02400 0.32 +1.1 511,825 - ABZR87_RS02400 0.32 +0.1 511,969 + ABZR87_RS02400 0.44 +0.4 511,970 - ABZR87_RS02400 0.44 +1.0 511,970 - ABZR87_RS02400 0.44 +0.7 511,970 - ABZR87_RS02400 0.44 +1.7 512,204 + ABZR87_RS02400 0.63 +1.2 512,204 + ABZR87_RS02400 0.63 +1.0 512,204 + ABZR87_RS02400 0.63 -1.3 512,204 + ABZR87_RS02400 0.63 +1.3 512,204 + ABZR87_RS02400 0.63 +1.3 512,281 + ABZR87_RS02400 0.70 +1.0 512,281 + ABZR87_RS02400 0.70 +0.3 512,281 + ABZR87_RS02400 0.70 +0.3 512,281 + ABZR87_RS02400 0.70 -0.6 512,281 + ABZR87_RS02400 0.70 -0.2 512,282 - ABZR87_RS02400 0.70 +0.7 512,480 - ABZR87_RS02400 0.86 +0.3 512,490 + ABZR87_RS02400 0.87 +0.7 512,491 - ABZR87_RS02400 0.87 +0.6 512,599 + -0.3 512,648 + -0.3 512,648 + -1.8 512,649 - +0.9 512,649 - -0.9 512,649 - +0.8 512,667 + +0.1 512,701 + -1.1 512,792 + -0.3 512,793 - +0.6 512,807 + +0.2 512,807 + -0.0 512,808 - -1.1 512,808 - -1.2 512,808 - +0.9 512,811 + +0.4 512,811 + -0.7 512,811 + +1.0 512,811 + -0.5 512,812 - +0.2 512,812 - +0.1 512,812 - -2.0 512,821 + +0.3 512,858 + -0.5 512,858 + +0.0 512,858 + -0.3 512,858 + +0.4 512,859 - -0.4 512,859 - -0.4 512,859 - +0.0 512,859 - +0.7 512,859 - +0.1 512,859 - -0.3 512,859 - +0.6 512,870 - -1.2 512,870 - -4.0 512,905 + -1.1 512,905 + +0.1 512,905 + -0.9 512,906 - +0.1
Or see this region's nucleotide sequence