Experiment: no_plant_soil sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00715 and ABZR87_RS00720 are separated by 28 nucleotides ABZR87_RS00720 and ABZR87_RS00725 are separated by 27 nucleotides
ABZR87_RS00715: ABZR87_RS00715 - MotA/TolQ/ExbB proton channel family protein, at 145,974 to 146,594
_RS00715
ABZR87_RS00720: ABZR87_RS00720 - biopolymer transporter ExbD, at 146,623 to 147,051
_RS00720
ABZR87_RS00725: ABZR87_RS00725 - tetraacyldisaccharide 4'-kinase, at 147,079 to 148,128
_RS00725
Position (kb) 145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 144.985 kb on + strand at 144.985 kb on + strand at 144.985 kb on + strand at 144.985 kb on + strand at 144.986 kb on - strand at 144.986 kb on - strand at 144.994 kb on + strand at 144.995 kb on - strand at 145.022 kb on + strand at 145.037 kb on + strand at 145.037 kb on + strand at 145.038 kb on - strand at 145.038 kb on - strand at 145.148 kb on + strand at 145.149 kb on - strand at 145.252 kb on + strand at 145.252 kb on + strand at 145.253 kb on - strand at 145.365 kb on + strand at 145.365 kb on + strand at 145.365 kb on + strand at 145.365 kb on + strand at 145.366 kb on - strand at 145.539 kb on - strand at 145.539 kb on - strand at 145.539 kb on - strand at 145.700 kb on - strand at 145.710 kb on + strand at 145.710 kb on + strand at 145.710 kb on + strand at 145.710 kb on + strand at 145.710 kb on + strand at 145.711 kb on - strand at 145.711 kb on - strand at 145.711 kb on - strand at 145.868 kb on - strand at 146.103 kb on + strand, within ABZR87_RS00715 at 146.103 kb on + strand, within ABZR87_RS00715 at 146.432 kb on + strand, within ABZR87_RS00715 at 146.448 kb on + strand, within ABZR87_RS00715 at 146.448 kb on + strand, within ABZR87_RS00715 at 146.502 kb on + strand, within ABZR87_RS00715 at 146.502 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.526 kb on + strand, within ABZR87_RS00715 at 146.559 kb on + strand at 146.559 kb on + strand at 146.559 kb on + strand at 146.559 kb on + strand at 146.559 kb on + strand at 146.559 kb on + strand at 146.610 kb on - strand at 146.728 kb on + strand, within ABZR87_RS00720 at 146.728 kb on + strand, within ABZR87_RS00720 at 146.728 kb on + strand, within ABZR87_RS00720 at 146.728 kb on + strand, within ABZR87_RS00720 at 146.728 kb on + strand, within ABZR87_RS00720 at 146.728 kb on + strand, within ABZR87_RS00720 at 146.737 kb on + strand, within ABZR87_RS00720 at 146.737 kb on + strand, within ABZR87_RS00720 at 146.833 kb on + strand, within ABZR87_RS00720 at 146.833 kb on + strand, within ABZR87_RS00720 at 146.833 kb on + strand, within ABZR87_RS00720 at 146.833 kb on + strand, within ABZR87_RS00720 at 146.834 kb on - strand, within ABZR87_RS00720 at 146.834 kb on - strand, within ABZR87_RS00720 at 146.834 kb on - strand, within ABZR87_RS00720 at 147.049 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB remove 144,985 + -0.2 144,985 + +0.7 144,985 + -0.3 144,985 + +0.1 144,986 - -1.2 144,986 - +0.4 144,994 + +0.2 144,995 - +0.8 145,022 + +0.6 145,037 + +2.0 145,037 + -0.1 145,038 - -0.6 145,038 - -0.4 145,148 + -0.4 145,149 - -0.8 145,252 + -0.5 145,252 + +0.4 145,253 - +0.3 145,365 + -0.3 145,365 + -0.5 145,365 + -0.6 145,365 + -1.0 145,366 - -0.2 145,539 - -3.2 145,539 - -1.2 145,539 - +0.8 145,700 - -0.6 145,710 + -0.4 145,710 + -0.3 145,710 + +0.1 145,710 + +0.6 145,710 + -0.2 145,711 - +1.4 145,711 - +1.1 145,711 - +0.3 145,868 - -1.9 146,103 + ABZR87_RS00715 0.21 -1.2 146,103 + ABZR87_RS00715 0.21 -0.5 146,432 + ABZR87_RS00715 0.74 +0.1 146,448 + ABZR87_RS00715 0.76 -0.1 146,448 + ABZR87_RS00715 0.76 -1.8 146,502 + ABZR87_RS00715 0.85 +1.0 146,502 + ABZR87_RS00715 0.85 +0.8 146,526 + ABZR87_RS00715 0.89 -1.8 146,526 + ABZR87_RS00715 0.89 -0.7 146,526 + ABZR87_RS00715 0.89 -0.6 146,526 + ABZR87_RS00715 0.89 +0.2 146,526 + ABZR87_RS00715 0.89 -1.8 146,526 + ABZR87_RS00715 0.89 -0.4 146,526 + ABZR87_RS00715 0.89 -1.3 146,526 + ABZR87_RS00715 0.89 -0.7 146,526 + ABZR87_RS00715 0.89 -0.8 146,559 + -0.7 146,559 + -1.3 146,559 + -0.6 146,559 + -0.6 146,559 + +0.2 146,559 + -0.8 146,610 - -1.5 146,728 + ABZR87_RS00720 0.24 -0.6 146,728 + ABZR87_RS00720 0.24 -0.5 146,728 + ABZR87_RS00720 0.24 -0.2 146,728 + ABZR87_RS00720 0.24 -0.4 146,728 + ABZR87_RS00720 0.24 -2.2 146,728 + ABZR87_RS00720 0.24 -0.7 146,737 + ABZR87_RS00720 0.27 -0.4 146,737 + ABZR87_RS00720 0.27 -1.0 146,833 + ABZR87_RS00720 0.49 -1.2 146,833 + ABZR87_RS00720 0.49 +0.8 146,833 + ABZR87_RS00720 0.49 -0.0 146,833 + ABZR87_RS00720 0.49 +0.2 146,834 - ABZR87_RS00720 0.49 -0.8 146,834 - ABZR87_RS00720 0.49 -1.2 146,834 - ABZR87_RS00720 0.49 +0.8 147,049 + -0.7
Or see this region's nucleotide sequence