Experiment: no_plant_soil sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00250 and ABZR87_RS00255 overlap by 4 nucleotides ABZR87_RS00255 and ABZR87_RS00260 are separated by 243 nucleotides ABZR87_RS00260 and ABZR87_RS00265 are separated by 4 nucleotides
ABZR87_RS00250: ABZR87_RS00250 - MFS transporter, at 49,672 to 50,874
_RS00250
ABZR87_RS00255: ABZR87_RS00255 - TIGR03571 family LLM class oxidoreductase, at 50,871 to 51,815
_RS00255
ABZR87_RS00260: ABZR87_RS00260 - MarR family winged helix-turn-helix transcriptional regulator, at 52,059 to 52,496
_RS00260
ABZR87_RS00265: ABZR87_RS00265 - chloride channel protein, at 52,501 to 54,318
_RS00265
Position (kb) 50
51
52 Strain fitness (log2 ratio) -1
0
1
2 at 50.171 kb on + strand, within ABZR87_RS00250 at 50.171 kb on + strand, within ABZR87_RS00250 at 50.171 kb on + strand, within ABZR87_RS00250 at 50.172 kb on - strand, within ABZR87_RS00250 at 50.172 kb on - strand, within ABZR87_RS00250 at 50.172 kb on - strand, within ABZR87_RS00250 at 50.172 kb on - strand, within ABZR87_RS00250 at 50.172 kb on - strand, within ABZR87_RS00250 at 50.177 kb on + strand, within ABZR87_RS00250 at 50.177 kb on + strand, within ABZR87_RS00250 at 50.178 kb on - strand, within ABZR87_RS00250 at 50.178 kb on - strand, within ABZR87_RS00250 at 50.178 kb on - strand, within ABZR87_RS00250 at 50.693 kb on + strand, within ABZR87_RS00250 at 50.728 kb on + strand, within ABZR87_RS00250 at 50.728 kb on + strand, within ABZR87_RS00250 at 50.728 kb on + strand, within ABZR87_RS00250 at 50.881 kb on + strand at 50.881 kb on + strand at 50.881 kb on + strand at 50.881 kb on + strand at 50.882 kb on - strand at 51.115 kb on + strand, within ABZR87_RS00255 at 51.115 kb on + strand, within ABZR87_RS00255 at 51.115 kb on + strand, within ABZR87_RS00255 at 51.116 kb on - strand, within ABZR87_RS00255 at 51.116 kb on - strand, within ABZR87_RS00255 at 51.327 kb on + strand, within ABZR87_RS00255 at 51.327 kb on + strand, within ABZR87_RS00255 at 51.604 kb on + strand, within ABZR87_RS00255 at 51.604 kb on + strand, within ABZR87_RS00255 at 51.604 kb on + strand, within ABZR87_RS00255 at 51.605 kb on - strand, within ABZR87_RS00255 at 51.866 kb on + strand at 51.866 kb on + strand at 51.866 kb on + strand at 51.867 kb on - strand at 52.014 kb on - strand at 52.022 kb on + strand at 52.029 kb on - strand at 52.049 kb on + strand at 52.049 kb on + strand at 52.188 kb on + strand, within ABZR87_RS00260 at 52.189 kb on - strand, within ABZR87_RS00260 at 52.189 kb on - strand, within ABZR87_RS00260 at 52.189 kb on - strand, within ABZR87_RS00260 at 52.341 kb on - strand, within ABZR87_RS00260 at 52.494 kb on + strand at 52.494 kb on + strand at 52.494 kb on + strand at 52.495 kb on - strand at 52.495 kb on - strand at 52.495 kb on - strand at 52.698 kb on + strand, within ABZR87_RS00265 at 52.699 kb on - strand, within ABZR87_RS00265 at 52.699 kb on - strand, within ABZR87_RS00265
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 1; outgrowth in LB remove 50,171 + ABZR87_RS00250 0.41 -0.2 50,171 + ABZR87_RS00250 0.41 +0.3 50,171 + ABZR87_RS00250 0.41 -0.5 50,172 - ABZR87_RS00250 0.42 -0.4 50,172 - ABZR87_RS00250 0.42 +0.6 50,172 - ABZR87_RS00250 0.42 -0.4 50,172 - ABZR87_RS00250 0.42 +0.3 50,172 - ABZR87_RS00250 0.42 -0.8 50,177 + ABZR87_RS00250 0.42 +0.7 50,177 + ABZR87_RS00250 0.42 +2.3 50,178 - ABZR87_RS00250 0.42 +0.3 50,178 - ABZR87_RS00250 0.42 +0.5 50,178 - ABZR87_RS00250 0.42 +0.1 50,693 + ABZR87_RS00250 0.85 -0.1 50,728 + ABZR87_RS00250 0.88 -0.4 50,728 + ABZR87_RS00250 0.88 +0.2 50,728 + ABZR87_RS00250 0.88 -0.1 50,881 + -0.2 50,881 + -0.6 50,881 + +0.2 50,881 + +1.2 50,882 - -0.2 51,115 + ABZR87_RS00255 0.26 +0.8 51,115 + ABZR87_RS00255 0.26 +0.2 51,115 + ABZR87_RS00255 0.26 +0.9 51,116 - ABZR87_RS00255 0.26 -0.2 51,116 - ABZR87_RS00255 0.26 +0.1 51,327 + ABZR87_RS00255 0.48 +0.3 51,327 + ABZR87_RS00255 0.48 -1.2 51,604 + ABZR87_RS00255 0.78 -0.7 51,604 + ABZR87_RS00255 0.78 +0.6 51,604 + ABZR87_RS00255 0.78 -0.4 51,605 - ABZR87_RS00255 0.78 +0.0 51,866 + -0.6 51,866 + +0.6 51,866 + -0.4 51,867 - -0.2 52,014 - +0.1 52,022 + -0.5 52,029 - +1.1 52,049 + -0.8 52,049 + -1.5 52,188 + ABZR87_RS00260 0.29 +0.4 52,189 - ABZR87_RS00260 0.30 +1.2 52,189 - ABZR87_RS00260 0.30 +0.5 52,189 - ABZR87_RS00260 0.30 +1.8 52,341 - ABZR87_RS00260 0.64 +1.6 52,494 + -0.3 52,494 + -0.9 52,494 + -0.5 52,495 - +1.3 52,495 - +1.1 52,495 - +0.8 52,698 + ABZR87_RS00265 0.11 +1.2 52,699 - ABZR87_RS00265 0.11 +1.4 52,699 - ABZR87_RS00265 0.11 +0.7
Or see this region's nucleotide sequence