Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09570

Experiment: Tetracycline 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09565 and ABZR86_RS09570 are separated by 371 nucleotidesABZR86_RS09570 and ABZR86_RS09575 are separated by 5 nucleotidesABZR86_RS09575 and ABZR86_RS09580 are separated by 661 nucleotides ABZR86_RS09565: ABZR86_RS09565 - slipin family protein, at 2,132,849 to 2,133,973 _RS09565 ABZR86_RS09570: ABZR86_RS09570 - tRNA-Val, at 2,134,345 to 2,134,415 _RS09570 ABZR86_RS09575: ABZR86_RS09575 - tRNA-Ala, at 2,134,421 to 2,134,491 _RS09575 ABZR86_RS09580: ABZR86_RS09580 - response regulator transcription factor, at 2,135,153 to 2,135,755 _RS09580 Position (kb) 2134 2135Strain fitness (log2 ratio) -2 -1 0 1at 2133.465 kb on + strand, within ABZR86_RS09565at 2133.465 kb on + strand, within ABZR86_RS09565at 2133.663 kb on + strand, within ABZR86_RS09565at 2134.014 kb on - strandat 2134.014 kb on - strandat 2134.014 kb on - strandat 2134.065 kb on - strandat 2134.133 kb on + strandat 2134.483 kb on + strand, within ABZR86_RS09575at 2134.484 kb on - strand, within ABZR86_RS09575at 2134.484 kb on - strand, within ABZR86_RS09575at 2134.484 kb on - strand, within ABZR86_RS09575at 2134.522 kb on + strandat 2134.523 kb on - strandat 2135.155 kb on - strandat 2135.235 kb on + strand, within ABZR86_RS09580at 2135.236 kb on - strand, within ABZR86_RS09580at 2135.236 kb on - strand, within ABZR86_RS09580

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.012 mg/ml
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2,133,465 + ABZR86_RS09565 0.55 +0.5
2,133,465 + ABZR86_RS09565 0.55 +1.0
2,133,663 + ABZR86_RS09565 0.72 -0.4
2,134,014 - +0.1
2,134,014 - -0.2
2,134,014 - +0.0
2,134,065 - -2.0
2,134,133 + -0.2
2,134,483 + ABZR86_RS09575 0.87 +1.7
2,134,484 - ABZR86_RS09575 0.89 -0.7
2,134,484 - ABZR86_RS09575 0.89 +0.5
2,134,484 - ABZR86_RS09575 0.89 -1.2
2,134,522 + -0.3
2,134,523 - -0.4
2,135,155 - +0.6
2,135,235 + ABZR86_RS09580 0.14 -0.0
2,135,236 - ABZR86_RS09580 0.14 -0.2
2,135,236 - ABZR86_RS09580 0.14 -0.6

Or see this region's nucleotide sequence