Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07945

Experiment: Tetracycline 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07935 and ABZR86_RS07940 are separated by 16 nucleotidesABZR86_RS07940 and ABZR86_RS07945 are separated by 168 nucleotidesABZR86_RS07945 and ABZR86_RS07950 are separated by 381 nucleotides ABZR86_RS07935: ABZR86_RS07935 - 4'-phosphopantetheinyl transferase superfamily protein, at 1,761,922 to 1,762,608 _RS07935 ABZR86_RS07940: ABZR86_RS07940 - TetR/AcrR family transcriptional regulator, at 1,762,625 to 1,763,428 _RS07940 ABZR86_RS07945: ABZR86_RS07945 - hypothetical protein, at 1,763,597 to 1,764,511 _RS07945 ABZR86_RS07950: ABZR86_RS07950 - hypothetical protein, at 1,764,893 to 1,765,402 _RS07950 Position (kb) 1763 1764 1765Strain fitness (log2 ratio) -1 0 1at 1763.062 kb on - strand, within ABZR86_RS07940at 1763.148 kb on - strand, within ABZR86_RS07940at 1763.284 kb on - strand, within ABZR86_RS07940at 1763.466 kb on - strandat 1763.521 kb on + strandat 1763.521 kb on + strandat 1763.522 kb on - strandat 1763.599 kb on - strandat 1763.619 kb on + strandat 1763.620 kb on - strandat 1763.620 kb on - strandat 1763.762 kb on - strand, within ABZR86_RS07945at 1763.762 kb on - strand, within ABZR86_RS07945at 1763.854 kb on + strand, within ABZR86_RS07945at 1763.855 kb on - strand, within ABZR86_RS07945at 1763.967 kb on + strand, within ABZR86_RS07945at 1763.967 kb on + strand, within ABZR86_RS07945at 1763.968 kb on - strand, within ABZR86_RS07945at 1763.968 kb on - strand, within ABZR86_RS07945at 1763.968 kb on - strand, within ABZR86_RS07945at 1763.968 kb on - strand, within ABZR86_RS07945at 1763.974 kb on + strand, within ABZR86_RS07945at 1764.249 kb on + strand, within ABZR86_RS07945at 1764.511 kb on + strandat 1764.526 kb on + strandat 1764.596 kb on + strandat 1764.878 kb on + strandat 1764.878 kb on + strandat 1764.901 kb on - strandat 1764.994 kb on + strand, within ABZR86_RS07950at 1765.109 kb on - strand, within ABZR86_RS07950at 1765.232 kb on - strand, within ABZR86_RS07950at 1765.436 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.012 mg/ml
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1,763,062 - ABZR86_RS07940 0.54 +0.2
1,763,148 - ABZR86_RS07940 0.65 +0.3
1,763,284 - ABZR86_RS07940 0.82 +1.1
1,763,466 - -0.4
1,763,521 + -0.2
1,763,521 + +0.0
1,763,522 - +0.3
1,763,599 - -0.1
1,763,619 + -1.1
1,763,620 - -0.4
1,763,620 - +0.3
1,763,762 - ABZR86_RS07945 0.18 +0.2
1,763,762 - ABZR86_RS07945 0.18 -0.0
1,763,854 + ABZR86_RS07945 0.28 +0.1
1,763,855 - ABZR86_RS07945 0.28 +0.2
1,763,967 + ABZR86_RS07945 0.40 +0.9
1,763,967 + ABZR86_RS07945 0.40 -0.2
1,763,968 - ABZR86_RS07945 0.41 -0.1
1,763,968 - ABZR86_RS07945 0.41 +0.9
1,763,968 - ABZR86_RS07945 0.41 +0.3
1,763,968 - ABZR86_RS07945 0.41 +0.3
1,763,974 + ABZR86_RS07945 0.41 -0.1
1,764,249 + ABZR86_RS07945 0.71 -0.2
1,764,511 + -0.2
1,764,526 + +1.2
1,764,596 + -0.6
1,764,878 + -0.2
1,764,878 + +0.3
1,764,901 - -0.2
1,764,994 + ABZR86_RS07950 0.20 +0.4
1,765,109 - ABZR86_RS07950 0.42 -0.3
1,765,232 - ABZR86_RS07950 0.66 -0.3
1,765,436 - -0.0

Or see this region's nucleotide sequence