Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05270

Experiment: Tetracycline 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05265 and ABZR86_RS05270 are separated by 9 nucleotidesABZR86_RS05270 and ABZR86_RS05275 are separated by 104 nucleotides ABZR86_RS05265: ABZR86_RS05265 - ferritin-like domain-containing protein, at 1,183,940 to 1,185,916 _RS05265 ABZR86_RS05270: ABZR86_RS05270 - alpha/beta hydrolase, at 1,185,926 to 1,186,732 _RS05270 ABZR86_RS05275: ABZR86_RS05275 - PhzF family phenazine biosynthesis protein, at 1,186,837 to 1,187,667 _RS05275 Position (kb) 1185 1186 1187Strain fitness (log2 ratio) -2 -1 0 1at 1185.283 kb on + strand, within ABZR86_RS05265at 1185.572 kb on + strand, within ABZR86_RS05265at 1185.573 kb on - strand, within ABZR86_RS05265at 1185.573 kb on - strand, within ABZR86_RS05265at 1185.586 kb on - strand, within ABZR86_RS05265at 1185.610 kb on - strand, within ABZR86_RS05265at 1185.610 kb on - strand, within ABZR86_RS05265at 1186.057 kb on + strand, within ABZR86_RS05270at 1186.140 kb on + strand, within ABZR86_RS05270at 1186.140 kb on + strand, within ABZR86_RS05270at 1186.140 kb on + strand, within ABZR86_RS05270at 1186.141 kb on - strand, within ABZR86_RS05270at 1186.144 kb on + strand, within ABZR86_RS05270at 1186.144 kb on + strand, within ABZR86_RS05270at 1186.145 kb on - strand, within ABZR86_RS05270at 1186.145 kb on - strand, within ABZR86_RS05270at 1186.481 kb on - strand, within ABZR86_RS05270at 1186.481 kb on - strand, within ABZR86_RS05270at 1186.481 kb on - strand, within ABZR86_RS05270at 1186.616 kb on + strand, within ABZR86_RS05270at 1186.616 kb on + strand, within ABZR86_RS05270at 1186.616 kb on + strand, within ABZR86_RS05270at 1186.617 kb on - strand, within ABZR86_RS05270at 1186.709 kb on + strandat 1186.709 kb on + strandat 1186.709 kb on + strandat 1186.710 kb on - strandat 1186.838 kb on + strandat 1186.839 kb on - strandat 1186.975 kb on - strand, within ABZR86_RS05275at 1187.104 kb on + strand, within ABZR86_RS05275at 1187.104 kb on + strand, within ABZR86_RS05275at 1187.104 kb on + strand, within ABZR86_RS05275at 1187.104 kb on + strand, within ABZR86_RS05275at 1187.104 kb on + strand, within ABZR86_RS05275at 1187.105 kb on - strand, within ABZR86_RS05275at 1187.105 kb on - strand, within ABZR86_RS05275at 1187.105 kb on - strand, within ABZR86_RS05275

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.012 mg/ml
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1,185,283 + ABZR86_RS05265 0.68 +0.2
1,185,572 + ABZR86_RS05265 0.83 -0.0
1,185,573 - ABZR86_RS05265 0.83 -0.2
1,185,573 - ABZR86_RS05265 0.83 +0.2
1,185,586 - ABZR86_RS05265 0.83 -0.0
1,185,610 - ABZR86_RS05265 0.84 -0.5
1,185,610 - ABZR86_RS05265 0.84 +0.4
1,186,057 + ABZR86_RS05270 0.16 +0.3
1,186,140 + ABZR86_RS05270 0.27 -0.7
1,186,140 + ABZR86_RS05270 0.27 +0.2
1,186,140 + ABZR86_RS05270 0.27 -0.0
1,186,141 - ABZR86_RS05270 0.27 -0.1
1,186,144 + ABZR86_RS05270 0.27 +0.2
1,186,144 + ABZR86_RS05270 0.27 +0.0
1,186,145 - ABZR86_RS05270 0.27 +0.3
1,186,145 - ABZR86_RS05270 0.27 -0.4
1,186,481 - ABZR86_RS05270 0.69 -0.3
1,186,481 - ABZR86_RS05270 0.69 -0.3
1,186,481 - ABZR86_RS05270 0.69 +0.2
1,186,616 + ABZR86_RS05270 0.86 -0.5
1,186,616 + ABZR86_RS05270 0.86 +0.1
1,186,616 + ABZR86_RS05270 0.86 -1.5
1,186,617 - ABZR86_RS05270 0.86 -0.2
1,186,709 + -0.1
1,186,709 + -0.9
1,186,709 + +0.6
1,186,710 - +0.7
1,186,838 + +0.5
1,186,839 - +0.1
1,186,975 - ABZR86_RS05275 0.17 +0.3
1,187,104 + ABZR86_RS05275 0.32 +0.1
1,187,104 + ABZR86_RS05275 0.32 -0.1
1,187,104 + ABZR86_RS05275 0.32 -0.3
1,187,104 + ABZR86_RS05275 0.32 -2.3
1,187,104 + ABZR86_RS05275 0.32 -1.4
1,187,105 - ABZR86_RS05275 0.32 +0.1
1,187,105 - ABZR86_RS05275 0.32 +0.5
1,187,105 - ABZR86_RS05275 0.32 +0.3

Or see this region's nucleotide sequence