Experiment: Levan - from Erwinia herbicola (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0738 and BT0739 are separated by 220 nucleotides BT0739 and BT0740 are separated by 16 nucleotides BT0740 and BT0741 are separated by 61 nucleotides BT0741 and BT0742 overlap by 4 nucleotides
BT0738: BT0738 - serine hydroxymethyltransferase (NCBI ptt file), at 916,121 to 917,401
BT0738
BT0739: BT0739 - hypothetical protein (NCBI ptt file), at 917,622 to 918,359
BT0739
BT0740: BT0740 - flavoredoxin (NCBI ptt file), at 918,376 to 918,915
BT0740
BT0741: BT0741 - aspartate carbamoyltransferase regulatory chain (NCBI ptt file), at 918,977 to 919,438
BT0741
BT0742: BT0742 - aspartate carbamoyltransferase catalytic chain (NCBI ptt file), at 919,435 to 920,376
BT0742
Position (kb) 918
919 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 917.447 kb on + strand at 917.739 kb on - strand, within BT0739 at 917.922 kb on - strand, within BT0739 at 918.011 kb on - strand, within BT0739 at 918.080 kb on - strand, within BT0739 at 918.354 kb on - strand at 918.628 kb on + strand, within BT0740 at 918.727 kb on - strand, within BT0740 at 919.442 kb on - strand at 919.716 kb on - strand, within BT0742
Per-strain Table
Position Strand Gene LocusTag Fraction Levan - from Erwinia herbicola (C) remove 917,447 + -5.0 917,739 - BT0739 0.16 +1.7 917,922 - BT0739 0.41 -0.2 918,011 - BT0739 0.53 +0.7 918,080 - BT0739 0.62 -0.3 918,354 - -0.3 918,628 + BT0740 0.47 -1.6 918,727 - BT0740 0.65 -0.7 919,442 - -0.8 919,716 - BT0742 0.30 +0.4
Or see this region's nucleotide sequence