Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2215

Experiment: nitrate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsecY and rpl15 are separated by 121 nucleotidesrpl15 and rpsE are separated by 37 nucleotidesrpsE and rplR are separated by 3 nucleotidesrplR and rplF overlap by 1 nucleotides Synpcc7942_2214: secY - preprotein translocase subunit SecY, at 2,289,522 to 2,290,841 secY Synpcc7942_2215: rpl15 - 50S ribosomal protein L15, at 2,290,963 to 2,291,406 rpl15 Synpcc7942_2216: rpsE - 30S ribosomal protein S5, at 2,291,444 to 2,291,986 rpsE Synpcc7942_2217: rplR - 50S ribosomal protein L18, at 2,291,990 to 2,292,352 rplR Synpcc7942_2218: rplF - 50S ribosomal protein L6, at 2,292,352 to 2,292,891 rplF Position (kb) 2290 2291 2292Strain fitness (log2 ratio) -3 -2 -1 0 1at 2290.849 kb on + strandat 2290.861 kb on + strandat 2290.903 kb on + strandat 2290.909 kb on + strandat 2290.960 kb on + strandat 2290.962 kb on + strandat 2290.966 kb on + strandat 2290.981 kb on + strandat 2291.039 kb on + strand, within rpl15at 2291.045 kb on - strand, within rpl15at 2291.111 kb on + strand, within rpl15at 2291.112 kb on - strand, within rpl15at 2291.201 kb on + strand, within rpl15at 2291.233 kb on + strand, within rpl15at 2291.442 kb on + strandat 2291.988 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 25 mM
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2,290,849 + +1.1
2,290,861 + +0.8
2,290,903 + -2.0
2,290,909 + -2.6
2,290,960 + -0.3
2,290,962 + -1.8
2,290,966 + -1.0
2,290,981 + -0.4
2,291,039 + rpl15 Synpcc7942_2215 0.17 -1.0
2,291,045 - rpl15 Synpcc7942_2215 0.18 -1.0
2,291,111 + rpl15 Synpcc7942_2215 0.33 -1.0
2,291,112 - rpl15 Synpcc7942_2215 0.34 -2.0
2,291,201 + rpl15 Synpcc7942_2215 0.54 -0.3
2,291,233 + rpl15 Synpcc7942_2215 0.61 -2.6
2,291,442 + -2.0
2,291,988 + -2.9

Or see this region's nucleotide sequence