Experiment: nitrate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aspS and ftsH are separated by 100 nucleotides ftsH and gid are separated by 177 nucleotides
Synpcc7942_1313: aspS - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) <small>(from data)</small>, at 1,340,634 to 1,342,433
aspS
Synpcc7942_1314: ftsH - FtsH-2 peptidase. Metallo peptidase. MEROPS family M41, at 1,342,534 to 1,344,405
ftsH
Synpcc7942_1315: gid - tRNA (uracil-5-)-methyltransferase Gid, at 1,344,583 to 1,345,983
gid
Position (kb) 1342
1343
1344
1345 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1342.454 kb on - strand at 1342.492 kb on + strand at 1342.500 kb on - strand at 1342.500 kb on - strand at 1342.531 kb on + strand at 1342.531 kb on + strand at 1342.531 kb on + strand at 1342.531 kb on + strand at 1342.531 kb on + strand at 1342.539 kb on - strand at 1342.539 kb on - strand at 1342.539 kb on - strand at 1342.555 kb on - strand at 1342.555 kb on - strand at 1342.565 kb on - strand at 1342.567 kb on + strand at 1342.576 kb on + strand at 1342.592 kb on + strand at 1342.592 kb on + strand at 1342.608 kb on + strand at 1342.610 kb on - strand at 1342.623 kb on + strand at 1342.697 kb on + strand at 1342.712 kb on - strand at 1342.733 kb on + strand, within ftsH at 1342.733 kb on + strand, within ftsH at 1342.754 kb on + strand, within ftsH at 1342.754 kb on + strand, within ftsH at 1342.754 kb on + strand, within ftsH at 1342.816 kb on + strand, within ftsH at 1342.818 kb on - strand, within ftsH at 1342.927 kb on + strand, within ftsH at 1342.991 kb on + strand, within ftsH at 1343.001 kb on + strand, within ftsH at 1343.004 kb on + strand, within ftsH at 1343.007 kb on + strand, within ftsH at 1343.009 kb on + strand, within ftsH at 1343.009 kb on + strand, within ftsH at 1343.009 kb on + strand, within ftsH at 1343.009 kb on + strand, within ftsH at 1343.009 kb on + strand, within ftsH at 1343.009 kb on + strand, within ftsH at 1343.009 kb on + strand, within ftsH at 1343.017 kb on - strand, within ftsH at 1343.017 kb on - strand, within ftsH at 1343.017 kb on - strand, within ftsH at 1343.022 kb on + strand, within ftsH at 1343.024 kb on + strand, within ftsH at 1343.166 kb on - strand, within ftsH at 1343.191 kb on + strand, within ftsH at 1343.191 kb on + strand, within ftsH at 1343.199 kb on - strand, within ftsH at 1343.199 kb on - strand, within ftsH at 1343.214 kb on + strand, within ftsH at 1343.244 kb on - strand, within ftsH at 1343.249 kb on + strand, within ftsH at 1343.249 kb on + strand, within ftsH at 1343.257 kb on - strand, within ftsH at 1343.263 kb on + strand, within ftsH at 1343.268 kb on + strand, within ftsH at 1343.298 kb on - strand, within ftsH at 1343.315 kb on - strand, within ftsH at 1343.330 kb on + strand, within ftsH at 1343.392 kb on + strand at 1343.392 kb on - strand, within ftsH at 1343.393 kb on + strand, within ftsH at 1343.428 kb on - strand, within ftsH at 1343.463 kb on - strand, within ftsH at 1343.470 kb on + strand, within ftsH at 1343.478 kb on - strand, within ftsH at 1343.486 kb on - strand, within ftsH at 1343.500 kb on - strand, within ftsH at 1343.500 kb on - strand, within ftsH at 1343.523 kb on + strand, within ftsH at 1343.525 kb on - strand, within ftsH at 1343.555 kb on + strand, within ftsH at 1343.600 kb on - strand, within ftsH at 1343.600 kb on - strand, within ftsH at 1343.656 kb on + strand, within ftsH at 1343.674 kb on - strand, within ftsH at 1343.752 kb on - strand, within ftsH at 1343.780 kb on - strand, within ftsH at 1343.837 kb on + strand, within ftsH at 1343.922 kb on - strand, within ftsH at 1343.930 kb on + strand, within ftsH at 1343.930 kb on + strand, within ftsH at 1343.930 kb on + strand, within ftsH at 1343.930 kb on + strand, within ftsH at 1343.930 kb on + strand, within ftsH at 1343.930 kb on + strand, within ftsH at 1343.930 kb on + strand, within ftsH at 1343.938 kb on - strand, within ftsH at 1343.938 kb on - strand, within ftsH at 1343.938 kb on - strand, within ftsH at 1343.948 kb on - strand, within ftsH at 1343.954 kb on + strand, within ftsH at 1343.954 kb on + strand, within ftsH at 1343.962 kb on - strand, within ftsH at 1343.988 kb on - strand, within ftsH at 1344.007 kb on - strand, within ftsH at 1344.041 kb on + strand, within ftsH at 1344.127 kb on - strand, within ftsH at 1344.147 kb on + strand, within ftsH at 1344.152 kb on + strand, within ftsH at 1344.152 kb on + strand, within ftsH at 1344.152 kb on + strand, within ftsH at 1344.152 kb on + strand, within ftsH at 1344.152 kb on + strand, within ftsH at 1344.160 kb on - strand, within ftsH at 1344.167 kb on - strand, within ftsH at 1344.183 kb on - strand, within ftsH at 1344.218 kb on + strand at 1344.218 kb on + strand at 1344.218 kb on + strand at 1344.226 kb on - strand at 1344.226 kb on - strand at 1344.226 kb on - strand at 1344.226 kb on - strand at 1344.265 kb on + strand at 1344.266 kb on + strand at 1344.276 kb on + strand at 1344.283 kb on + strand at 1344.285 kb on + strand at 1344.285 kb on - strand at 1344.291 kb on - strand at 1344.291 kb on - strand at 1344.413 kb on + strand at 1344.441 kb on - strand at 1344.443 kb on + strand at 1344.451 kb on - strand at 1344.451 kb on - strand at 1344.451 kb on - strand at 1344.451 kb on - strand at 1344.474 kb on + strand at 1344.477 kb on - strand at 1344.479 kb on - strand at 1344.480 kb on + strand at 1344.482 kb on - strand at 1344.519 kb on - strand at 1344.535 kb on + strand at 1344.535 kb on + strand at 1344.572 kb on - strand at 1344.580 kb on + strand at 1344.601 kb on + strand at 1344.614 kb on - strand at 1344.641 kb on + strand at 1344.669 kb on - strand at 1344.705 kb on - strand at 1344.720 kb on + strand at 1344.720 kb on + strand at 1344.723 kb on - strand, within gid at 1344.728 kb on - strand, within gid at 1344.743 kb on - strand, within gid at 1344.767 kb on + strand, within gid at 1344.823 kb on + strand, within gid at 1344.829 kb on + strand, within gid at 1344.829 kb on + strand, within gid at 1344.829 kb on + strand, within gid at 1344.829 kb on + strand, within gid at 1344.829 kb on + strand, within gid at 1344.831 kb on - strand, within gid at 1344.831 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.837 kb on - strand, within gid at 1344.844 kb on + strand, within gid at 1344.849 kb on + strand, within gid at 1344.849 kb on + strand, within gid at 1344.850 kb on + strand, within gid at 1344.852 kb on - strand, within gid at 1344.852 kb on - strand at 1344.852 kb on - strand at 1344.852 kb on - strand, within gid at 1344.852 kb on - strand, within gid at 1344.857 kb on - strand, within gid at 1344.883 kb on + strand, within gid at 1344.904 kb on + strand, within gid at 1344.917 kb on - strand, within gid at 1344.935 kb on + strand, within gid at 1344.971 kb on + strand, within gid at 1345.035 kb on + strand, within gid at 1345.043 kb on - strand, within gid at 1345.105 kb on - strand, within gid at 1345.160 kb on + strand at 1345.177 kb on - strand, within gid at 1345.210 kb on + strand, within gid at 1345.249 kb on - strand, within gid at 1345.263 kb on - strand, within gid at 1345.344 kb on + strand, within gid at 1345.349 kb on + strand, within gid at 1345.354 kb on + strand, within gid at 1345.354 kb on + strand, within gid at 1345.354 kb on + strand, within gid at 1345.354 kb on + strand, within gid at 1345.357 kb on - strand, within gid at 1345.362 kb on - strand, within gid at 1345.374 kb on - strand, within gid at 1345.400 kb on + strand, within gid
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 25 mM remove 1,342,454 - +5.4 1,342,492 + -2.6 1,342,500 - -1.0 1,342,500 - +1.6 1,342,531 + -0.0 1,342,531 + +1.3 1,342,531 + +1.0 1,342,531 + +1.9 1,342,531 + +0.8 1,342,539 - +2.8 1,342,539 - +0.2 1,342,539 - -1.0 1,342,555 - +0.6 1,342,555 - +1.6 1,342,565 - +1.3 1,342,567 + -2.0 1,342,576 + -0.4 1,342,592 + -2.0 1,342,592 + -0.0 1,342,608 + +0.2 1,342,610 - +1.3 1,342,623 + +1.6 1,342,697 + -0.4 1,342,712 - +0.6 1,342,733 + ftsH Synpcc7942_1314 0.11 +1.0 1,342,733 + ftsH Synpcc7942_1314 0.11 +0.7 1,342,754 + ftsH Synpcc7942_1314 0.12 +2.3 1,342,754 + ftsH Synpcc7942_1314 0.12 -0.3 1,342,754 + ftsH Synpcc7942_1314 0.12 +1.3 1,342,816 + ftsH Synpcc7942_1314 0.15 -1.0 1,342,818 - ftsH Synpcc7942_1314 0.15 -4.0 1,342,927 + ftsH Synpcc7942_1314 0.21 +0.1 1,342,991 + ftsH Synpcc7942_1314 0.24 -0.4 1,343,001 + ftsH Synpcc7942_1314 0.25 +0.9 1,343,004 + ftsH Synpcc7942_1314 0.25 -2.0 1,343,007 + ftsH Synpcc7942_1314 0.25 +0.3 1,343,009 + ftsH Synpcc7942_1314 0.25 +1.1 1,343,009 + ftsH Synpcc7942_1314 0.25 -0.2 1,343,009 + ftsH Synpcc7942_1314 0.25 +0.9 1,343,009 + ftsH Synpcc7942_1314 0.25 -0.0 1,343,009 + ftsH Synpcc7942_1314 0.25 -1.6 1,343,009 + ftsH Synpcc7942_1314 0.25 +0.5 1,343,009 + ftsH Synpcc7942_1314 0.25 +2.1 1,343,017 - ftsH Synpcc7942_1314 0.26 +2.9 1,343,017 - ftsH Synpcc7942_1314 0.26 -2.0 1,343,017 - ftsH Synpcc7942_1314 0.26 -4.0 1,343,022 + ftsH Synpcc7942_1314 0.26 -0.3 1,343,024 + ftsH Synpcc7942_1314 0.26 +2.1 1,343,166 - ftsH Synpcc7942_1314 0.34 +0.3 1,343,191 + ftsH Synpcc7942_1314 0.35 +2.7 1,343,191 + ftsH Synpcc7942_1314 0.35 -0.0 1,343,199 - ftsH Synpcc7942_1314 0.36 +1.3 1,343,199 - ftsH Synpcc7942_1314 0.36 +4.0 1,343,214 + ftsH Synpcc7942_1314 0.36 +1.5 1,343,244 - ftsH Synpcc7942_1314 0.38 +1.0 1,343,249 + ftsH Synpcc7942_1314 0.38 +1.3 1,343,249 + ftsH Synpcc7942_1314 0.38 +1.7 1,343,257 - ftsH Synpcc7942_1314 0.39 +0.3 1,343,263 + ftsH Synpcc7942_1314 0.39 +0.6 1,343,268 + ftsH Synpcc7942_1314 0.39 -0.7 1,343,298 - ftsH Synpcc7942_1314 0.41 -0.6 1,343,315 - ftsH Synpcc7942_1314 0.42 +0.2 1,343,330 + ftsH Synpcc7942_1314 0.43 -0.0 1,343,392 + -1.0 1,343,392 - ftsH Synpcc7942_1314 0.46 +1.2 1,343,393 + ftsH Synpcc7942_1314 0.46 +1.5 1,343,428 - ftsH Synpcc7942_1314 0.48 -1.0 1,343,463 - ftsH Synpcc7942_1314 0.50 +0.0 1,343,470 + ftsH Synpcc7942_1314 0.50 -0.0 1,343,478 - ftsH Synpcc7942_1314 0.50 -1.0 1,343,486 - ftsH Synpcc7942_1314 0.51 +2.6 1,343,500 - ftsH Synpcc7942_1314 0.52 -2.3 1,343,500 - ftsH Synpcc7942_1314 0.52 -0.0 1,343,523 + ftsH Synpcc7942_1314 0.53 +0.7 1,343,525 - ftsH Synpcc7942_1314 0.53 +0.2 1,343,555 + ftsH Synpcc7942_1314 0.55 +0.6 1,343,600 - ftsH Synpcc7942_1314 0.57 -2.6 1,343,600 - ftsH Synpcc7942_1314 0.57 +0.6 1,343,656 + ftsH Synpcc7942_1314 0.60 -1.0 1,343,674 - ftsH Synpcc7942_1314 0.61 +1.3 1,343,752 - ftsH Synpcc7942_1314 0.65 +0.4 1,343,780 - ftsH Synpcc7942_1314 0.67 -2.6 1,343,837 + ftsH Synpcc7942_1314 0.70 +0.7 1,343,922 - ftsH Synpcc7942_1314 0.74 +0.9 1,343,930 + ftsH Synpcc7942_1314 0.75 -0.3 1,343,930 + ftsH Synpcc7942_1314 0.75 +0.1 1,343,930 + ftsH Synpcc7942_1314 0.75 -2.0 1,343,930 + ftsH Synpcc7942_1314 0.75 -0.2 1,343,930 + ftsH Synpcc7942_1314 0.75 +0.6 1,343,930 + ftsH Synpcc7942_1314 0.75 +0.1 1,343,930 + ftsH Synpcc7942_1314 0.75 -0.3 1,343,938 - ftsH Synpcc7942_1314 0.75 +1.9 1,343,938 - ftsH Synpcc7942_1314 0.75 -0.0 1,343,938 - ftsH Synpcc7942_1314 0.75 +0.7 1,343,948 - ftsH Synpcc7942_1314 0.76 +1.6 1,343,954 + ftsH Synpcc7942_1314 0.76 +1.3 1,343,954 + ftsH Synpcc7942_1314 0.76 -3.3 1,343,962 - ftsH Synpcc7942_1314 0.76 +0.3 1,343,988 - ftsH Synpcc7942_1314 0.78 +2.9 1,344,007 - ftsH Synpcc7942_1314 0.79 -0.1 1,344,041 + ftsH Synpcc7942_1314 0.81 -0.4 1,344,127 - ftsH Synpcc7942_1314 0.85 +0.3 1,344,147 + ftsH Synpcc7942_1314 0.86 +1.5 1,344,152 + ftsH Synpcc7942_1314 0.86 +0.2 1,344,152 + ftsH Synpcc7942_1314 0.86 -1.0 1,344,152 + ftsH Synpcc7942_1314 0.86 -0.2 1,344,152 + ftsH Synpcc7942_1314 0.86 +1.4 1,344,152 + ftsH Synpcc7942_1314 0.86 +2.8 1,344,160 - ftsH Synpcc7942_1314 0.87 +1.3 1,344,167 - ftsH Synpcc7942_1314 0.87 -2.0 1,344,183 - ftsH Synpcc7942_1314 0.88 +2.3 1,344,218 + +0.7 1,344,218 + +2.7 1,344,218 + +3.2 1,344,226 - -2.0 1,344,226 - -0.0 1,344,226 - +2.4 1,344,226 - +0.2 1,344,265 + -1.0 1,344,266 + +1.3 1,344,276 + -1.0 1,344,283 + -1.0 1,344,285 + -1.6 1,344,285 - +2.3 1,344,291 - -1.3 1,344,291 - -0.7 1,344,413 + -1.8 1,344,441 - +0.3 1,344,443 + +0.3 1,344,451 - +1.3 1,344,451 - -0.3 1,344,451 - +2.2 1,344,451 - +0.7 1,344,474 + -2.0 1,344,477 - -3.0 1,344,479 - +0.1 1,344,480 + +2.0 1,344,482 - -2.6 1,344,519 - +1.3 1,344,535 + +2.1 1,344,535 + +0.5 1,344,572 - +1.3 1,344,580 + -1.0 1,344,601 + -1.0 1,344,614 - +1.6 1,344,641 + +1.0 1,344,669 - -1.5 1,344,705 - +2.1 1,344,720 + -0.3 1,344,720 + +0.6 1,344,723 - gid Synpcc7942_1315 0.10 -1.0 1,344,728 - gid Synpcc7942_1315 0.10 -1.0 1,344,743 - gid Synpcc7942_1315 0.11 -3.0 1,344,767 + gid Synpcc7942_1315 0.13 +0.6 1,344,823 + gid Synpcc7942_1315 0.17 +1.0 1,344,829 + gid Synpcc7942_1315 0.18 +0.1 1,344,829 + gid Synpcc7942_1315 0.18 -0.0 1,344,829 + gid Synpcc7942_1315 0.18 -3.0 1,344,829 + gid Synpcc7942_1315 0.18 +1.4 1,344,829 + gid Synpcc7942_1315 0.18 +2.4 1,344,831 - gid Synpcc7942_1315 0.18 -0.0 1,344,831 - gid Synpcc7942_1315 0.18 -1.0 1,344,837 - gid Synpcc7942_1315 0.18 +0.9 1,344,837 - gid Synpcc7942_1315 0.18 -1.0 1,344,837 - gid Synpcc7942_1315 0.18 +1.7 1,344,837 - gid Synpcc7942_1315 0.18 -0.5 1,344,837 - gid Synpcc7942_1315 0.18 -1.6 1,344,837 - gid Synpcc7942_1315 0.18 -1.0 1,344,837 - gid Synpcc7942_1315 0.18 -0.7 1,344,837 - gid Synpcc7942_1315 0.18 +0.8 1,344,837 - gid Synpcc7942_1315 0.18 +0.6 1,344,837 - gid Synpcc7942_1315 0.18 +0.8 1,344,837 - gid Synpcc7942_1315 0.18 +0.2 1,344,844 + gid Synpcc7942_1315 0.19 +1.1 1,344,849 + gid Synpcc7942_1315 0.19 +0.5 1,344,849 + gid Synpcc7942_1315 0.19 +1.9 1,344,850 + gid Synpcc7942_1315 0.19 +1.8 1,344,852 - gid Synpcc7942_1315 0.19 +3.4 1,344,852 - +1.6 1,344,852 - -2.0 1,344,852 - gid Synpcc7942_1315 0.19 +4.1 1,344,852 - gid Synpcc7942_1315 0.19 -1.0 1,344,857 - gid Synpcc7942_1315 0.20 -1.0 1,344,883 + gid Synpcc7942_1315 0.21 +0.3 1,344,904 + gid Synpcc7942_1315 0.23 -1.0 1,344,917 - gid Synpcc7942_1315 0.24 -2.0 1,344,935 + gid Synpcc7942_1315 0.25 -2.0 1,344,971 + gid Synpcc7942_1315 0.28 +2.0 1,345,035 + gid Synpcc7942_1315 0.32 -0.2 1,345,043 - gid Synpcc7942_1315 0.33 -3.3 1,345,105 - gid Synpcc7942_1315 0.37 +0.9 1,345,160 + +3.0 1,345,177 - gid Synpcc7942_1315 0.42 +1.6 1,345,210 + gid Synpcc7942_1315 0.45 -0.0 1,345,249 - gid Synpcc7942_1315 0.48 -1.0 1,345,263 - gid Synpcc7942_1315 0.49 +1.8 1,345,344 + gid Synpcc7942_1315 0.54 -0.2 1,345,349 + gid Synpcc7942_1315 0.55 +2.0 1,345,354 + gid Synpcc7942_1315 0.55 +0.6 1,345,354 + gid Synpcc7942_1315 0.55 +2.0 1,345,354 + gid Synpcc7942_1315 0.55 +0.3 1,345,354 + gid Synpcc7942_1315 0.55 +1.1 1,345,357 - gid Synpcc7942_1315 0.55 +3.8 1,345,362 - gid Synpcc7942_1315 0.56 +1.1 1,345,374 - gid Synpcc7942_1315 0.56 +5.0 1,345,400 + gid Synpcc7942_1315 0.58 +2.0
Or see this region's nucleotide sequence