Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1023

Experiment: nitrate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmenE and Synpcc7942_1022 overlap by 26 nucleotidesSynpcc7942_1022 and Synpcc7942_1023 are separated by 3 nucleotidesSynpcc7942_1023 and Synpcc7942_1024 are separated by 19 nucleotides Synpcc7942_1021: menE - O-succinylbenzoic acid--CoA ligase, at 1,035,731 to 1,037,074 menE Synpcc7942_1022: Synpcc7942_1022 - hypothetical protein, at 1,037,049 to 1,037,837 _1022 Synpcc7942_1023: Synpcc7942_1023 - hypothetical protein, at 1,037,841 to 1,038,086 _1023 Synpcc7942_1024: Synpcc7942_1024 - hypothetical protein, at 1,038,106 to 1,039,098 _1024 Position (kb) 1037 1038 1039Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1037.054 kb on - strandat 1037.076 kb on - strandat 1037.083 kb on + strandat 1037.140 kb on - strand, within Synpcc7942_1022at 1037.269 kb on + strand, within Synpcc7942_1022at 1037.269 kb on + strand, within Synpcc7942_1022at 1037.363 kb on + strand, within Synpcc7942_1022at 1037.363 kb on + strand, within Synpcc7942_1022at 1037.371 kb on - strand, within Synpcc7942_1022at 1037.449 kb on + strand, within Synpcc7942_1022at 1037.474 kb on - strand, within Synpcc7942_1022at 1037.529 kb on + strand, within Synpcc7942_1022at 1037.530 kb on - strand, within Synpcc7942_1022at 1037.554 kb on - strand, within Synpcc7942_1022at 1037.595 kb on + strand, within Synpcc7942_1022at 1037.609 kb on - strand, within Synpcc7942_1022at 1037.639 kb on - strand, within Synpcc7942_1022at 1037.693 kb on + strand, within Synpcc7942_1022at 1037.694 kb on + strand, within Synpcc7942_1022at 1037.773 kb on + strandat 1037.788 kb on + strandat 1037.796 kb on - strandat 1037.800 kb on + strandat 1037.805 kb on + strandat 1037.805 kb on + strandat 1037.839 kb on + strandat 1037.839 kb on + strandat 1037.839 kb on + strandat 1037.847 kb on - strandat 1037.847 kb on - strandat 1037.847 kb on - strandat 1037.847 kb on - strandat 1037.847 kb on - strandat 1037.847 kb on - strandat 1037.861 kb on + strandat 1037.866 kb on + strand, within Synpcc7942_1023at 1037.873 kb on + strand, within Synpcc7942_1023at 1037.877 kb on + strand, within Synpcc7942_1023at 1037.893 kb on + strand, within Synpcc7942_1023at 1037.979 kb on - strand, within Synpcc7942_1023at 1038.018 kb on + strand, within Synpcc7942_1023at 1038.033 kb on + strand, within Synpcc7942_1023at 1038.043 kb on + strand, within Synpcc7942_1023at 1038.043 kb on + strand, within Synpcc7942_1023at 1038.043 kb on + strand, within Synpcc7942_1023at 1038.051 kb on - strand, within Synpcc7942_1023at 1038.051 kb on - strand, within Synpcc7942_1023at 1038.120 kb on - strandat 1038.131 kb on - strandat 1038.180 kb on - strandat 1038.205 kb on - strandat 1038.205 kb on - strandat 1038.205 kb on - strandat 1038.207 kb on + strand, within Synpcc7942_1024at 1038.235 kb on + strand, within Synpcc7942_1024at 1038.241 kb on - strand, within Synpcc7942_1024at 1038.241 kb on - strand, within Synpcc7942_1024at 1038.241 kb on - strand, within Synpcc7942_1024at 1038.241 kb on - strand, within Synpcc7942_1024at 1038.241 kb on - strand, within Synpcc7942_1024at 1038.244 kb on + strand, within Synpcc7942_1024at 1038.244 kb on + strand, within Synpcc7942_1024at 1038.251 kb on - strand, within Synpcc7942_1024at 1038.252 kb on - strand, within Synpcc7942_1024at 1038.252 kb on - strand, within Synpcc7942_1024at 1038.290 kb on + strand, within Synpcc7942_1024at 1038.292 kb on + strand, within Synpcc7942_1024at 1038.310 kb on + strand, within Synpcc7942_1024at 1038.321 kb on - strand, within Synpcc7942_1024at 1038.325 kb on + strand, within Synpcc7942_1024at 1038.325 kb on + strand, within Synpcc7942_1024at 1038.325 kb on + strandat 1038.335 kb on + strand, within Synpcc7942_1024at 1038.335 kb on + strand, within Synpcc7942_1024at 1038.335 kb on + strand, within Synpcc7942_1024at 1038.343 kb on - strand, within Synpcc7942_1024at 1038.373 kb on + strand, within Synpcc7942_1024at 1038.373 kb on + strand, within Synpcc7942_1024at 1038.373 kb on + strand, within Synpcc7942_1024at 1038.373 kb on + strand, within Synpcc7942_1024at 1038.373 kb on + strand, within Synpcc7942_1024at 1038.381 kb on - strand, within Synpcc7942_1024at 1038.381 kb on - strand, within Synpcc7942_1024at 1038.381 kb on - strand, within Synpcc7942_1024at 1038.381 kb on - strand, within Synpcc7942_1024at 1038.381 kb on - strand, within Synpcc7942_1024at 1038.381 kb on - strand, within Synpcc7942_1024at 1038.381 kb on - strand, within Synpcc7942_1024at 1038.383 kb on + strand, within Synpcc7942_1024at 1038.383 kb on + strand, within Synpcc7942_1024at 1038.383 kb on + strand, within Synpcc7942_1024at 1038.383 kb on + strand, within Synpcc7942_1024at 1038.391 kb on - strand, within Synpcc7942_1024at 1038.391 kb on - strand, within Synpcc7942_1024at 1038.391 kb on - strand, within Synpcc7942_1024at 1038.391 kb on - strand, within Synpcc7942_1024at 1038.403 kb on + strand, within Synpcc7942_1024at 1038.419 kb on + strand, within Synpcc7942_1024at 1038.427 kb on - strand, within Synpcc7942_1024at 1038.451 kb on + strand, within Synpcc7942_1024at 1038.452 kb on - strand, within Synpcc7942_1024at 1038.456 kb on + strand, within Synpcc7942_1024at 1038.456 kb on + strand, within Synpcc7942_1024at 1038.461 kb on + strand, within Synpcc7942_1024at 1038.464 kb on - strand, within Synpcc7942_1024at 1038.477 kb on + strand, within Synpcc7942_1024at 1038.477 kb on + strand, within Synpcc7942_1024at 1038.483 kb on - strand, within Synpcc7942_1024at 1038.485 kb on - strand, within Synpcc7942_1024at 1038.495 kb on + strand, within Synpcc7942_1024at 1038.506 kb on + strand, within Synpcc7942_1024at 1038.508 kb on - strand, within Synpcc7942_1024at 1038.521 kb on + strand, within Synpcc7942_1024at 1038.522 kb on - strand, within Synpcc7942_1024at 1038.541 kb on - strand, within Synpcc7942_1024at 1038.555 kb on + strand, within Synpcc7942_1024at 1038.556 kb on + strand, within Synpcc7942_1024at 1038.556 kb on + strand, within Synpcc7942_1024at 1038.564 kb on - strand, within Synpcc7942_1024at 1038.564 kb on - strand, within Synpcc7942_1024at 1038.564 kb on - strand, within Synpcc7942_1024at 1038.567 kb on - strand, within Synpcc7942_1024at 1038.571 kb on + strand, within Synpcc7942_1024at 1038.571 kb on + strand, within Synpcc7942_1024at 1038.571 kb on + strand, within Synpcc7942_1024at 1038.576 kb on + strand, within Synpcc7942_1024at 1038.579 kb on - strand, within Synpcc7942_1024at 1038.579 kb on - strand, within Synpcc7942_1024at 1038.579 kb on - strand, within Synpcc7942_1024at 1038.579 kb on - strand, within Synpcc7942_1024at 1038.579 kb on - strand, within Synpcc7942_1024at 1038.584 kb on - strand, within Synpcc7942_1024at 1038.587 kb on + strand, within Synpcc7942_1024at 1038.595 kb on - strand, within Synpcc7942_1024at 1038.602 kb on + strand, within Synpcc7942_1024at 1038.610 kb on - strand, within Synpcc7942_1024at 1038.616 kb on + strand, within Synpcc7942_1024at 1038.624 kb on - strand, within Synpcc7942_1024at 1038.630 kb on + strand, within Synpcc7942_1024at 1038.631 kb on - strand, within Synpcc7942_1024at 1038.631 kb on - strand, within Synpcc7942_1024at 1038.651 kb on + strand, within Synpcc7942_1024at 1038.659 kb on - strand, within Synpcc7942_1024at 1038.670 kb on - strand, within Synpcc7942_1024at 1038.675 kb on - strand, within Synpcc7942_1024at 1038.761 kb on - strand, within Synpcc7942_1024at 1038.768 kb on - strand, within Synpcc7942_1024at 1038.768 kb on - strand, within Synpcc7942_1024at 1038.788 kb on + strand, within Synpcc7942_1024at 1038.796 kb on - strand, within Synpcc7942_1024at 1038.822 kb on + strand, within Synpcc7942_1024at 1038.822 kb on + strand, within Synpcc7942_1024at 1038.822 kb on + strand, within Synpcc7942_1024at 1038.822 kb on + strand, within Synpcc7942_1024at 1038.822 kb on - strand, within Synpcc7942_1024at 1038.845 kb on - strand, within Synpcc7942_1024at 1038.845 kb on - strand, within Synpcc7942_1024at 1038.923 kb on - strand, within Synpcc7942_1024at 1038.928 kb on - strand, within Synpcc7942_1024at 1038.933 kb on - strand, within Synpcc7942_1024at 1038.967 kb on + strand, within Synpcc7942_1024at 1039.006 kb on + strandat 1039.006 kb on + strandat 1039.006 kb on - strandat 1039.019 kb on - strandat 1039.019 kb on - strandat 1039.059 kb on + strandat 1039.067 kb on - strandat 1039.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 25 mM
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1,037,054 - -0.0
1,037,076 - +2.6
1,037,083 + +2.4
1,037,140 - Synpcc7942_1022 0.12 -1.0
1,037,269 + Synpcc7942_1022 0.28 -0.0
1,037,269 + Synpcc7942_1022 0.28 -3.6
1,037,363 + Synpcc7942_1022 0.40 -1.0
1,037,363 + Synpcc7942_1022 0.40 -1.0
1,037,371 - Synpcc7942_1022 0.41 -2.6
1,037,449 + Synpcc7942_1022 0.51 +1.5
1,037,474 - Synpcc7942_1022 0.54 -3.6
1,037,529 + Synpcc7942_1022 0.61 -0.0
1,037,530 - Synpcc7942_1022 0.61 +1.8
1,037,554 - Synpcc7942_1022 0.64 -2.0
1,037,595 + Synpcc7942_1022 0.69 +1.0
1,037,609 - Synpcc7942_1022 0.71 -0.8
1,037,639 - Synpcc7942_1022 0.75 -2.4
1,037,693 + Synpcc7942_1022 0.82 -1.0
1,037,694 + Synpcc7942_1022 0.82 -2.0
1,037,773 + +3.4
1,037,788 + +1.0
1,037,796 - -0.0
1,037,800 + -1.0
1,037,805 + +1.2
1,037,805 + +1.8
1,037,839 + +0.8
1,037,839 + +1.1
1,037,839 + +2.3
1,037,847 - -1.0
1,037,847 - +1.0
1,037,847 - -1.0
1,037,847 - +2.9
1,037,847 - -0.1
1,037,847 - -3.9
1,037,861 + +1.8
1,037,866 + Synpcc7942_1023 0.10 -0.0
1,037,873 + Synpcc7942_1023 0.13 +1.0
1,037,877 + Synpcc7942_1023 0.15 +1.7
1,037,893 + Synpcc7942_1023 0.21 -2.0
1,037,979 - Synpcc7942_1023 0.56 -1.0
1,038,018 + Synpcc7942_1023 0.72 -2.6
1,038,033 + Synpcc7942_1023 0.78 +3.5
1,038,043 + Synpcc7942_1023 0.82 -3.0
1,038,043 + Synpcc7942_1023 0.82 -2.6
1,038,043 + Synpcc7942_1023 0.82 -0.5
1,038,051 - Synpcc7942_1023 0.85 -2.4
1,038,051 - Synpcc7942_1023 0.85 +2.1
1,038,120 - -0.2
1,038,131 - +2.8
1,038,180 - +2.2
1,038,205 - +0.3
1,038,205 - +1.0
1,038,205 - +1.0
1,038,207 + Synpcc7942_1024 0.10 +0.4
1,038,235 + Synpcc7942_1024 0.13 -1.0
1,038,241 - Synpcc7942_1024 0.14 +0.3
1,038,241 - Synpcc7942_1024 0.14 -0.5
1,038,241 - Synpcc7942_1024 0.14 -2.0
1,038,241 - Synpcc7942_1024 0.14 -1.0
1,038,241 - Synpcc7942_1024 0.14 +2.4
1,038,244 + Synpcc7942_1024 0.14 +0.3
1,038,244 + Synpcc7942_1024 0.14 -3.0
1,038,251 - Synpcc7942_1024 0.15 -2.0
1,038,252 - Synpcc7942_1024 0.15 +1.6
1,038,252 - Synpcc7942_1024 0.15 -2.0
1,038,290 + Synpcc7942_1024 0.19 +1.5
1,038,292 + Synpcc7942_1024 0.19 +0.8
1,038,310 + Synpcc7942_1024 0.21 +2.8
1,038,321 - Synpcc7942_1024 0.22 -1.0
1,038,325 + Synpcc7942_1024 0.22 +0.2
1,038,325 + Synpcc7942_1024 0.22 -1.0
1,038,325 + +1.0
1,038,335 + Synpcc7942_1024 0.23 -2.6
1,038,335 + Synpcc7942_1024 0.23 +0.4
1,038,335 + Synpcc7942_1024 0.23 -0.5
1,038,343 - Synpcc7942_1024 0.24 +1.1
1,038,373 + Synpcc7942_1024 0.27 +0.4
1,038,373 + Synpcc7942_1024 0.27 +0.4
1,038,373 + Synpcc7942_1024 0.27 +1.0
1,038,373 + Synpcc7942_1024 0.27 -2.0
1,038,373 + Synpcc7942_1024 0.27 +0.9
1,038,381 - Synpcc7942_1024 0.28 +2.5
1,038,381 - Synpcc7942_1024 0.28 +3.2
1,038,381 - Synpcc7942_1024 0.28 -2.6
1,038,381 - Synpcc7942_1024 0.28 -1.0
1,038,381 - Synpcc7942_1024 0.28 +4.0
1,038,381 - Synpcc7942_1024 0.28 -0.8
1,038,381 - Synpcc7942_1024 0.28 +1.3
1,038,383 + Synpcc7942_1024 0.28 +1.3
1,038,383 + Synpcc7942_1024 0.28 -1.0
1,038,383 + Synpcc7942_1024 0.28 +2.7
1,038,383 + Synpcc7942_1024 0.28 +1.3
1,038,391 - Synpcc7942_1024 0.29 +2.8
1,038,391 - Synpcc7942_1024 0.29 +0.4
1,038,391 - Synpcc7942_1024 0.29 +1.2
1,038,391 - Synpcc7942_1024 0.29 -3.0
1,038,403 + Synpcc7942_1024 0.30 +1.5
1,038,419 + Synpcc7942_1024 0.32 +3.2
1,038,427 - Synpcc7942_1024 0.32 -3.5
1,038,451 + Synpcc7942_1024 0.35 +0.2
1,038,452 - Synpcc7942_1024 0.35 +0.5
1,038,456 + Synpcc7942_1024 0.35 -2.0
1,038,456 + Synpcc7942_1024 0.35 -1.8
1,038,461 + Synpcc7942_1024 0.36 -1.0
1,038,464 - Synpcc7942_1024 0.36 +2.0
1,038,477 + Synpcc7942_1024 0.37 +0.3
1,038,477 + Synpcc7942_1024 0.37 -2.6
1,038,483 - Synpcc7942_1024 0.38 +1.8
1,038,485 - Synpcc7942_1024 0.38 -0.3
1,038,495 + Synpcc7942_1024 0.39 +1.1
1,038,506 + Synpcc7942_1024 0.40 -0.7
1,038,508 - Synpcc7942_1024 0.40 +2.8
1,038,521 + Synpcc7942_1024 0.42 -2.6
1,038,522 - Synpcc7942_1024 0.42 +2.4
1,038,541 - Synpcc7942_1024 0.44 -2.0
1,038,555 + Synpcc7942_1024 0.45 +0.2
1,038,556 + Synpcc7942_1024 0.45 +1.8
1,038,556 + Synpcc7942_1024 0.45 +1.9
1,038,564 - Synpcc7942_1024 0.46 -0.0
1,038,564 - Synpcc7942_1024 0.46 -0.2
1,038,564 - Synpcc7942_1024 0.46 +1.8
1,038,567 - Synpcc7942_1024 0.46 +0.1
1,038,571 + Synpcc7942_1024 0.47 +1.8
1,038,571 + Synpcc7942_1024 0.47 -2.6
1,038,571 + Synpcc7942_1024 0.47 +1.2
1,038,576 + Synpcc7942_1024 0.47 +0.8
1,038,579 - Synpcc7942_1024 0.48 -2.0
1,038,579 - Synpcc7942_1024 0.48 -1.0
1,038,579 - Synpcc7942_1024 0.48 +0.1
1,038,579 - Synpcc7942_1024 0.48 +0.5
1,038,579 - Synpcc7942_1024 0.48 +0.5
1,038,584 - Synpcc7942_1024 0.48 -1.0
1,038,587 + Synpcc7942_1024 0.48 +0.2
1,038,595 - Synpcc7942_1024 0.49 +1.0
1,038,602 + Synpcc7942_1024 0.50 +1.5
1,038,610 - Synpcc7942_1024 0.51 -1.4
1,038,616 + Synpcc7942_1024 0.51 -0.2
1,038,624 - Synpcc7942_1024 0.52 +0.5
1,038,630 + Synpcc7942_1024 0.53 +1.2
1,038,631 - Synpcc7942_1024 0.53 -1.0
1,038,631 - Synpcc7942_1024 0.53 +0.5
1,038,651 + Synpcc7942_1024 0.55 +0.4
1,038,659 - Synpcc7942_1024 0.56 +1.8
1,038,670 - Synpcc7942_1024 0.57 -1.5
1,038,675 - Synpcc7942_1024 0.57 +1.5
1,038,761 - Synpcc7942_1024 0.66 -3.9
1,038,768 - Synpcc7942_1024 0.67 +1.1
1,038,768 - Synpcc7942_1024 0.67 +1.9
1,038,788 + Synpcc7942_1024 0.69 +0.7
1,038,796 - Synpcc7942_1024 0.69 +2.3
1,038,822 + Synpcc7942_1024 0.72 -1.0
1,038,822 + Synpcc7942_1024 0.72 -1.0
1,038,822 + Synpcc7942_1024 0.72 +0.1
1,038,822 + Synpcc7942_1024 0.72 -0.5
1,038,822 - Synpcc7942_1024 0.72 -2.6
1,038,845 - Synpcc7942_1024 0.74 +0.8
1,038,845 - Synpcc7942_1024 0.74 -0.0
1,038,923 - Synpcc7942_1024 0.82 -1.3
1,038,928 - Synpcc7942_1024 0.83 -0.0
1,038,933 - Synpcc7942_1024 0.83 +0.4
1,038,967 + Synpcc7942_1024 0.87 -0.5
1,039,006 + +1.6
1,039,006 + +0.5
1,039,006 - -1.2
1,039,019 - +1.1
1,039,019 - +1.8
1,039,059 + +0.5
1,039,067 - +1.1
1,039,067 - -2.0

Or see this region's nucleotide sequence