Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0697

Experiment: nitrate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0695 and psbT are separated by 209 nucleotidespsbT and psbB are separated by 76 nucleotidespsbB and Synpcc7942_0698 are separated by 336 nucleotidesSynpcc7942_0698 and psbM are separated by 99 nucleotides Synpcc7942_0695: Synpcc7942_0695 - hypothetical protein, at 688,334 to 688,840 _0695 Synpcc7942_0696: psbT - photosystem II reaction center protein T, at 689,050 to 689,145 psbT Synpcc7942_0697: psbB - photosystem II core light harvesting protein, at 689,222 to 690,748 psbB Synpcc7942_0698: Synpcc7942_0698 - probable ferredoxin, at 691,085 to 691,519 _0698 Synpcc7942_0699: psbM - photosystem II reaction center protein PsbM, at 691,619 to 691,726 psbM Position (kb) 689 690 691Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 688.236 kb on + strandat 688.365 kb on + strandat 688.386 kb on + strand, within Synpcc7942_0695at 688.434 kb on + strand, within Synpcc7942_0695at 688.442 kb on - strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strand, within Synpcc7942_0695at 688.552 kb on + strandat 688.552 kb on + strand, within Synpcc7942_0695at 688.558 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.560 kb on - strand, within Synpcc7942_0695at 688.571 kb on - strand, within Synpcc7942_0695at 688.622 kb on + strand, within Synpcc7942_0695at 688.627 kb on + strand, within Synpcc7942_0695at 688.692 kb on - strand, within Synpcc7942_0695at 688.722 kb on + strand, within Synpcc7942_0695at 688.759 kb on - strand, within Synpcc7942_0695at 688.760 kb on + strand, within Synpcc7942_0695at 688.787 kb on - strand, within Synpcc7942_0695at 688.788 kb on - strand, within Synpcc7942_0695at 688.825 kb on + strandat 688.871 kb on + strandat 689.018 kb on - strandat 689.021 kb on + strandat 689.021 kb on + strandat 689.028 kb on + strandat 689.029 kb on - strandat 689.095 kb on + strand, within psbTat 690.832 kb on - strandat 690.849 kb on - strandat 690.855 kb on + strandat 690.885 kb on + strandat 690.910 kb on - strandat 690.914 kb on - strandat 690.919 kb on - strandat 690.929 kb on - strandat 690.955 kb on - strandat 690.994 kb on + strandat 691.000 kb on - strandat 691.000 kb on - strandat 691.005 kb on - strandat 691.014 kb on - strandat 691.014 kb on - strandat 691.073 kb on - strandat 691.075 kb on + strandat 691.075 kb on + strandat 691.075 kb on + strandat 691.083 kb on - strandat 691.083 kb on - strandat 691.083 kb on - strandat 691.126 kb on - strandat 691.128 kb on - strandat 691.128 kb on - strandat 691.137 kb on + strand, within Synpcc7942_0698at 691.150 kb on + strand, within Synpcc7942_0698at 691.150 kb on + strand, within Synpcc7942_0698at 691.165 kb on + strandat 691.168 kb on - strand, within Synpcc7942_0698at 691.168 kb on - strand, within Synpcc7942_0698at 691.177 kb on + strand, within Synpcc7942_0698at 691.177 kb on + strand, within Synpcc7942_0698at 691.185 kb on - strand, within Synpcc7942_0698at 691.185 kb on - strandat 691.186 kb on - strand, within Synpcc7942_0698at 691.217 kb on - strandat 691.239 kb on - strand, within Synpcc7942_0698at 691.258 kb on - strand, within Synpcc7942_0698at 691.291 kb on - strand, within Synpcc7942_0698at 691.292 kb on - strandat 691.294 kb on + strand, within Synpcc7942_0698at 691.302 kb on - strand, within Synpcc7942_0698at 691.306 kb on + strand, within Synpcc7942_0698at 691.312 kb on + strand, within Synpcc7942_0698at 691.320 kb on - strand, within Synpcc7942_0698at 691.333 kb on - strand, within Synpcc7942_0698at 691.348 kb on + strand, within Synpcc7942_0698at 691.369 kb on + strand, within Synpcc7942_0698at 691.381 kb on + strand, within Synpcc7942_0698at 691.417 kb on + strand, within Synpcc7942_0698at 691.417 kb on + strand, within Synpcc7942_0698at 691.417 kb on + strand, within Synpcc7942_0698at 691.425 kb on - strand, within Synpcc7942_0698at 691.425 kb on - strand, within Synpcc7942_0698at 691.475 kb on + strand, within Synpcc7942_0698at 691.485 kb on + strandat 691.506 kb on - strandat 691.516 kb on - strandat 691.522 kb on - strandat 691.549 kb on + strandat 691.557 kb on - strandat 691.566 kb on + strandat 691.567 kb on - strandat 691.603 kb on - strandat 691.611 kb on + strandat 691.733 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 25 mM
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688,236 + -2.1
688,365 + -2.3
688,386 + Synpcc7942_0695 0.10 -3.4
688,434 + Synpcc7942_0695 0.20 -2.6
688,442 - Synpcc7942_0695 0.21 -2.1
688,552 + Synpcc7942_0695 0.43 -3.9
688,552 + Synpcc7942_0695 0.43 -2.6
688,552 + Synpcc7942_0695 0.43 -1.1
688,552 + Synpcc7942_0695 0.43 +0.2
688,552 + Synpcc7942_0695 0.43 -2.1
688,552 + Synpcc7942_0695 0.43 -3.0
688,552 + Synpcc7942_0695 0.43 -3.1
688,552 + Synpcc7942_0695 0.43 -4.2
688,552 + Synpcc7942_0695 0.43 -2.1
688,552 + Synpcc7942_0695 0.43 -0.6
688,552 + -1.1
688,552 + Synpcc7942_0695 0.43 -1.1
688,558 - Synpcc7942_0695 0.44 -2.6
688,560 - Synpcc7942_0695 0.45 -2.6
688,560 - Synpcc7942_0695 0.45 -1.1
688,560 - Synpcc7942_0695 0.45 -3.0
688,560 - Synpcc7942_0695 0.45 +1.3
688,560 - Synpcc7942_0695 0.45 -3.2
688,560 - Synpcc7942_0695 0.45 -1.1
688,560 - Synpcc7942_0695 0.45 -3.4
688,560 - Synpcc7942_0695 0.45 -3.1
688,560 - Synpcc7942_0695 0.45 -3.1
688,571 - Synpcc7942_0695 0.47 -1.6
688,622 + Synpcc7942_0695 0.57 -1.1
688,627 + Synpcc7942_0695 0.58 -0.5
688,692 - Synpcc7942_0695 0.71 -1.1
688,722 + Synpcc7942_0695 0.77 -2.6
688,759 - Synpcc7942_0695 0.84 -3.4
688,760 + Synpcc7942_0695 0.84 -3.4
688,787 - Synpcc7942_0695 0.89 -2.1
688,788 - Synpcc7942_0695 0.90 -1.1
688,825 + -2.6
688,871 + -1.1
689,018 - +1.3
689,021 + -1.5
689,021 + -2.6
689,028 + -1.1
689,029 - -0.3
689,095 + psbT Synpcc7942_0696 0.47 +0.9
690,832 - -1.1
690,849 - -1.1
690,855 + +0.2
690,885 + -3.6
690,910 - -2.6
690,914 - +1.3
690,919 - +0.5
690,929 - +3.3
690,955 - -2.1
690,994 + +2.7
691,000 - +0.2
691,000 - -1.6
691,005 - -3.1
691,014 - +0.2
691,014 - +1.5
691,073 - -0.1
691,075 + +1.5
691,075 + +2.4
691,075 + +0.8
691,083 - -2.1
691,083 - +0.7
691,083 - -1.1
691,126 - -0.4
691,128 - +1.3
691,128 - -2.6
691,137 + Synpcc7942_0698 0.12 -0.4
691,150 + Synpcc7942_0698 0.15 -0.7
691,150 + Synpcc7942_0698 0.15 +2.2
691,165 + -1.1
691,168 - Synpcc7942_0698 0.19 +3.1
691,168 - Synpcc7942_0698 0.19 +3.1
691,177 + Synpcc7942_0698 0.21 +1.4
691,177 + Synpcc7942_0698 0.21 +1.7
691,185 - Synpcc7942_0698 0.23 +2.9
691,185 - -1.1
691,186 - Synpcc7942_0698 0.23 +2.8
691,217 - -2.1
691,239 - Synpcc7942_0698 0.35 +1.2
691,258 - Synpcc7942_0698 0.40 -1.3
691,291 - Synpcc7942_0698 0.47 -2.1
691,292 - -2.1
691,294 + Synpcc7942_0698 0.48 -1.1
691,302 - Synpcc7942_0698 0.50 -0.6
691,306 + Synpcc7942_0698 0.51 +1.9
691,312 + Synpcc7942_0698 0.52 +3.4
691,320 - Synpcc7942_0698 0.54 -1.1
691,333 - Synpcc7942_0698 0.57 +1.6
691,348 + Synpcc7942_0698 0.60 +0.3
691,369 + Synpcc7942_0698 0.65 -2.1
691,381 + Synpcc7942_0698 0.68 +1.3
691,417 + Synpcc7942_0698 0.76 +3.6
691,417 + Synpcc7942_0698 0.76 +1.1
691,417 + Synpcc7942_0698 0.76 +2.4
691,425 - Synpcc7942_0698 0.78 +0.9
691,425 - Synpcc7942_0698 0.78 -2.6
691,475 + Synpcc7942_0698 0.90 +0.6
691,485 + +1.1
691,506 - +2.8
691,516 - +1.4
691,522 - +1.7
691,549 + -1.1
691,557 - +3.6
691,566 + -0.6
691,567 - +0.6
691,603 - -2.6
691,611 + -1.1
691,733 + +2.5

Or see this region's nucleotide sequence