Experiment: nitrate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eno and Synpcc7942_0640 are separated by 255 nucleotides Synpcc7942_0640 and sdhA are separated by 97 nucleotides
Synpcc7942_0639: eno - phosphopyruvate hydratase, at 630,677 to 631,969
eno
Synpcc7942_0640: Synpcc7942_0640 - ATPase, at 632,225 to 633,991
_0640
Synpcc7942_0641: sdhA - succinate dehydrogenase flavoprotein subunit, at 634,089 to 635,996
sdhA
Position (kb) 632
633
634 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 631.932 kb on + strand at 631.932 kb on + strand at 631.932 kb on + strand at 631.932 kb on + strand at 631.932 kb on + strand at 631.940 kb on - strand at 631.947 kb on + strand at 631.947 kb on + strand at 631.955 kb on - strand at 631.970 kb on + strand at 631.970 kb on + strand at 632.024 kb on + strand at 632.030 kb on - strand at 632.036 kb on - strand at 632.066 kb on - strand at 632.096 kb on - strand at 632.162 kb on + strand at 632.203 kb on - strand at 632.275 kb on - strand at 632.353 kb on - strand at 632.358 kb on - strand at 632.390 kb on + strand at 632.398 kb on - strand at 632.440 kb on + strand, within Synpcc7942_0640 at 632.493 kb on - strand, within Synpcc7942_0640 at 632.552 kb on + strand, within Synpcc7942_0640 at 632.609 kb on + strand, within Synpcc7942_0640 at 632.692 kb on - strand, within Synpcc7942_0640 at 632.716 kb on + strand, within Synpcc7942_0640 at 632.770 kb on + strand, within Synpcc7942_0640 at 632.795 kb on - strand, within Synpcc7942_0640 at 632.911 kb on - strand, within Synpcc7942_0640 at 632.948 kb on - strand, within Synpcc7942_0640 at 632.997 kb on + strand, within Synpcc7942_0640 at 633.113 kb on - strand, within Synpcc7942_0640 at 633.155 kb on - strand, within Synpcc7942_0640 at 633.218 kb on + strand, within Synpcc7942_0640 at 633.277 kb on + strand, within Synpcc7942_0640 at 633.282 kb on + strand, within Synpcc7942_0640 at 633.292 kb on + strand, within Synpcc7942_0640 at 633.300 kb on - strand, within Synpcc7942_0640 at 633.300 kb on - strand at 633.448 kb on - strand, within Synpcc7942_0640 at 633.448 kb on - strand, within Synpcc7942_0640 at 633.450 kb on + strand, within Synpcc7942_0640 at 633.478 kb on - strand, within Synpcc7942_0640 at 633.478 kb on - strand, within Synpcc7942_0640 at 633.643 kb on + strand, within Synpcc7942_0640 at 633.675 kb on - strand, within Synpcc7942_0640 at 633.678 kb on + strand at 633.678 kb on + strand, within Synpcc7942_0640 at 633.688 kb on + strand, within Synpcc7942_0640 at 633.695 kb on + strand, within Synpcc7942_0640 at 633.703 kb on - strand, within Synpcc7942_0640 at 633.703 kb on - strand, within Synpcc7942_0640 at 633.728 kb on + strand, within Synpcc7942_0640 at 633.970 kb on - strand at 634.106 kb on + strand at 634.148 kb on + strand at 634.181 kb on + strand at 634.196 kb on - strand at 634.213 kb on + strand at 634.221 kb on - strand at 634.224 kb on - strand at 634.272 kb on + strand at 634.272 kb on + strand at 634.272 kb on + strand at 634.280 kb on - strand, within sdhA at 634.280 kb on - strand, within sdhA at 634.280 kb on - strand, within sdhA at 634.280 kb on - strand, within sdhA at 634.298 kb on - strand, within sdhA at 634.304 kb on + strand, within sdhA at 634.431 kb on - strand, within sdhA at 634.431 kb on - strand, within sdhA at 634.469 kb on + strand, within sdhA at 634.474 kb on + strand, within sdhA at 634.482 kb on - strand, within sdhA at 634.484 kb on + strand, within sdhA at 634.484 kb on + strand, within sdhA at 634.515 kb on + strand, within sdhA at 634.530 kb on + strand, within sdhA at 634.530 kb on + strand, within sdhA at 634.540 kb on + strand, within sdhA at 634.565 kb on + strand, within sdhA at 634.573 kb on - strand, within sdhA at 634.583 kb on - strand, within sdhA at 634.597 kb on - strand, within sdhA at 634.600 kb on + strand, within sdhA at 634.600 kb on - strand, within sdhA at 634.608 kb on - strand, within sdhA at 634.608 kb on - strand, within sdhA at 634.608 kb on - strand, within sdhA at 634.623 kb on + strand, within sdhA at 634.633 kb on - strand, within sdhA at 634.648 kb on + strand, within sdhA at 634.668 kb on - strand, within sdhA at 634.673 kb on - strand, within sdhA at 634.689 kb on - strand, within sdhA at 634.742 kb on - strand, within sdhA at 634.743 kb on - strand, within sdhA at 634.769 kb on - strand, within sdhA at 634.792 kb on - strand, within sdhA at 634.797 kb on - strand, within sdhA at 634.797 kb on - strand, within sdhA at 634.797 kb on - strand, within sdhA at 634.804 kb on + strand, within sdhA at 634.812 kb on - strand, within sdhA at 634.812 kb on - strand, within sdhA at 634.812 kb on - strand, within sdhA at 634.820 kb on + strand, within sdhA at 634.820 kb on + strand, within sdhA at 634.825 kb on + strand, within sdhA at 634.833 kb on - strand, within sdhA at 634.848 kb on - strand, within sdhA at 634.958 kb on + strand, within sdhA at 634.985 kb on - strand, within sdhA
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 25 mM remove 631,932 + +2.1 631,932 + +0.6 631,932 + -1.1 631,932 + +1.6 631,932 + -1.5 631,940 - +0.8 631,947 + +1.7 631,947 + +1.8 631,955 - +2.1 631,970 + -0.1 631,970 + +2.1 632,024 + +1.9 632,030 - +0.5 632,036 - +0.5 632,066 - +2.2 632,096 - +2.3 632,162 + +0.5 632,203 - -1.1 632,275 - -0.4 632,353 - -1.1 632,358 - -0.3 632,390 + -0.4 632,398 - -1.1 632,440 + Synpcc7942_0640 0.12 -2.1 632,493 - Synpcc7942_0640 0.15 -1.1 632,552 + Synpcc7942_0640 0.19 -0.9 632,609 + Synpcc7942_0640 0.22 +1.9 632,692 - Synpcc7942_0640 0.26 +0.9 632,716 + Synpcc7942_0640 0.28 -1.1 632,770 + Synpcc7942_0640 0.31 -2.1 632,795 - Synpcc7942_0640 0.32 -2.1 632,911 - Synpcc7942_0640 0.39 -0.1 632,948 - Synpcc7942_0640 0.41 -2.1 632,997 + Synpcc7942_0640 0.44 -0.4 633,113 - Synpcc7942_0640 0.50 +1.3 633,155 - Synpcc7942_0640 0.53 -2.1 633,218 + Synpcc7942_0640 0.56 -1.1 633,277 + Synpcc7942_0640 0.60 +1.1 633,282 + Synpcc7942_0640 0.60 -1.1 633,292 + Synpcc7942_0640 0.60 -2.1 633,300 - Synpcc7942_0640 0.61 -3.4 633,300 - -1.1 633,448 - Synpcc7942_0640 0.69 -1.6 633,448 - Synpcc7942_0640 0.69 -4.2 633,450 + Synpcc7942_0640 0.69 -2.4 633,478 - Synpcc7942_0640 0.71 -0.1 633,478 - Synpcc7942_0640 0.71 -1.1 633,643 + Synpcc7942_0640 0.80 -2.1 633,675 - Synpcc7942_0640 0.82 -2.6 633,678 + -0.1 633,678 + Synpcc7942_0640 0.82 -0.5 633,688 + Synpcc7942_0640 0.83 +0.5 633,695 + Synpcc7942_0640 0.83 -1.1 633,703 - Synpcc7942_0640 0.84 -2.1 633,703 - Synpcc7942_0640 0.84 -2.1 633,728 + Synpcc7942_0640 0.85 -2.6 633,970 - +1.9 634,106 + +0.9 634,148 + +0.7 634,181 + -0.1 634,196 - +0.5 634,213 + -0.1 634,221 - +0.2 634,224 - -2.1 634,272 + +0.1 634,272 + -2.6 634,272 + +1.8 634,280 - sdhA Synpcc7942_0641 0.10 +1.0 634,280 - sdhA Synpcc7942_0641 0.10 -2.6 634,280 - sdhA Synpcc7942_0641 0.10 +1.8 634,280 - sdhA Synpcc7942_0641 0.10 +0.3 634,298 - sdhA Synpcc7942_0641 0.11 +1.5 634,304 + sdhA Synpcc7942_0641 0.11 +1.2 634,431 - sdhA Synpcc7942_0641 0.18 +1.9 634,431 - sdhA Synpcc7942_0641 0.18 +0.2 634,469 + sdhA Synpcc7942_0641 0.20 +1.2 634,474 + sdhA Synpcc7942_0641 0.20 +2.1 634,482 - sdhA Synpcc7942_0641 0.21 +0.4 634,484 + sdhA Synpcc7942_0641 0.21 +1.8 634,484 + sdhA Synpcc7942_0641 0.21 +1.1 634,515 + sdhA Synpcc7942_0641 0.22 -1.1 634,530 + sdhA Synpcc7942_0641 0.23 +0.8 634,530 + sdhA Synpcc7942_0641 0.23 -1.8 634,540 + sdhA Synpcc7942_0641 0.24 -2.1 634,565 + sdhA Synpcc7942_0641 0.25 +2.8 634,573 - sdhA Synpcc7942_0641 0.25 -0.1 634,583 - sdhA Synpcc7942_0641 0.26 +1.8 634,597 - sdhA Synpcc7942_0641 0.27 -0.9 634,600 + sdhA Synpcc7942_0641 0.27 -1.4 634,600 - sdhA Synpcc7942_0641 0.27 -2.6 634,608 - sdhA Synpcc7942_0641 0.27 -2.1 634,608 - sdhA Synpcc7942_0641 0.27 +0.3 634,608 - sdhA Synpcc7942_0641 0.27 -1.6 634,623 + sdhA Synpcc7942_0641 0.28 -3.1 634,633 - sdhA Synpcc7942_0641 0.29 +2.2 634,648 + sdhA Synpcc7942_0641 0.29 +0.9 634,668 - sdhA Synpcc7942_0641 0.30 -0.6 634,673 - sdhA Synpcc7942_0641 0.31 +2.4 634,689 - sdhA Synpcc7942_0641 0.31 +3.9 634,742 - sdhA Synpcc7942_0641 0.34 +1.9 634,743 - sdhA Synpcc7942_0641 0.34 +0.1 634,769 - sdhA Synpcc7942_0641 0.36 +0.5 634,792 - sdhA Synpcc7942_0641 0.37 -2.1 634,797 - sdhA Synpcc7942_0641 0.37 +1.9 634,797 - sdhA Synpcc7942_0641 0.37 -0.5 634,797 - sdhA Synpcc7942_0641 0.37 +2.2 634,804 + sdhA Synpcc7942_0641 0.37 +2.3 634,812 - sdhA Synpcc7942_0641 0.38 -0.5 634,812 - sdhA Synpcc7942_0641 0.38 +0.9 634,812 - sdhA Synpcc7942_0641 0.38 +1.8 634,820 + sdhA Synpcc7942_0641 0.38 +0.5 634,820 + sdhA Synpcc7942_0641 0.38 -3.1 634,825 + sdhA Synpcc7942_0641 0.39 +1.4 634,833 - sdhA Synpcc7942_0641 0.39 +2.4 634,848 - sdhA Synpcc7942_0641 0.40 +1.0 634,958 + sdhA Synpcc7942_0641 0.46 +0.4 634,985 - sdhA Synpcc7942_0641 0.47 +1.9
Or see this region's nucleotide sequence