Experiment: nitrate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cdsA and Synpcc7942_0395 are separated by 273 nucleotides Synpcc7942_0395 and purH are separated by 334 nucleotides
Synpcc7942_0394: cdsA - phosphatidate cytidylyltransferase, at 387,354 to 388,220
cdsA
Synpcc7942_0395: Synpcc7942_0395 - hypothetical protein, at 388,494 to 389,618
_0395
Synpcc7942_0396: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 389,953 to 391,494
purH
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 387.511 kb on - strand, within cdsA at 387.661 kb on - strand, within cdsA at 387.998 kb on + strand, within cdsA at 388.230 kb on - strand at 388.252 kb on + strand at 388.293 kb on - strand at 388.321 kb on + strand at 388.329 kb on - strand at 388.343 kb on + strand at 388.406 kb on - strand at 388.474 kb on + strand at 388.484 kb on + strand at 388.497 kb on - strand at 388.511 kb on - strand at 388.589 kb on - strand at 388.597 kb on + strand at 388.605 kb on - strand at 388.708 kb on + strand, within Synpcc7942_0395 at 388.708 kb on + strand, within Synpcc7942_0395 at 388.708 kb on + strand, within Synpcc7942_0395 at 388.715 kb on + strand, within Synpcc7942_0395 at 388.716 kb on - strand, within Synpcc7942_0395 at 388.736 kb on + strand, within Synpcc7942_0395 at 388.736 kb on + strand, within Synpcc7942_0395 at 388.744 kb on + strand, within Synpcc7942_0395 at 388.752 kb on - strand, within Synpcc7942_0395 at 388.752 kb on - strand, within Synpcc7942_0395 at 388.752 kb on - strand, within Synpcc7942_0395 at 388.778 kb on + strand, within Synpcc7942_0395 at 388.867 kb on + strand, within Synpcc7942_0395 at 388.867 kb on + strand, within Synpcc7942_0395 at 388.875 kb on - strand, within Synpcc7942_0395 at 388.875 kb on - strand, within Synpcc7942_0395 at 388.900 kb on + strand, within Synpcc7942_0395 at 388.925 kb on + strand, within Synpcc7942_0395 at 388.964 kb on + strand, within Synpcc7942_0395 at 388.974 kb on + strand, within Synpcc7942_0395 at 388.999 kb on - strand, within Synpcc7942_0395 at 389.093 kb on + strand, within Synpcc7942_0395 at 389.149 kb on + strand, within Synpcc7942_0395 at 389.149 kb on + strand, within Synpcc7942_0395 at 389.157 kb on - strand, within Synpcc7942_0395 at 389.296 kb on - strand, within Synpcc7942_0395 at 389.305 kb on + strand, within Synpcc7942_0395 at 389.307 kb on + strand, within Synpcc7942_0395 at 389.313 kb on - strand, within Synpcc7942_0395 at 389.313 kb on - strand, within Synpcc7942_0395 at 389.319 kb on + strand at 389.321 kb on - strand, within Synpcc7942_0395 at 389.326 kb on + strand, within Synpcc7942_0395 at 389.327 kb on - strand, within Synpcc7942_0395 at 389.327 kb on - strand, within Synpcc7942_0395 at 389.327 kb on - strand, within Synpcc7942_0395 at 389.327 kb on - strand, within Synpcc7942_0395 at 389.349 kb on + strand, within Synpcc7942_0395 at 389.394 kb on - strand, within Synpcc7942_0395 at 389.442 kb on + strand, within Synpcc7942_0395 at 389.469 kb on - strand, within Synpcc7942_0395 at 389.508 kb on - strand at 389.576 kb on - strand at 389.600 kb on - strand at 389.605 kb on - strand at 389.619 kb on + strand at 389.622 kb on - strand at 389.624 kb on + strand at 389.627 kb on - strand at 389.631 kb on + strand at 389.639 kb on - strand at 389.639 kb on - strand at 389.639 kb on - strand at 389.668 kb on + strand at 389.675 kb on - strand at 389.676 kb on - strand at 389.680 kb on + strand at 389.680 kb on + strand at 389.688 kb on - strand at 389.703 kb on + strand at 389.704 kb on - strand at 389.711 kb on - strand at 389.726 kb on - strand at 389.854 kb on + strand at 389.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 25 mM remove 387,511 - cdsA Synpcc7942_0394 0.18 -1.0 387,661 - cdsA Synpcc7942_0394 0.35 -2.0 387,998 + cdsA Synpcc7942_0394 0.74 -2.0 388,230 - +0.4 388,252 + +1.8 388,293 - +1.2 388,321 + +1.6 388,329 - -1.0 388,343 + +0.6 388,406 - +1.3 388,474 + -2.0 388,484 + -0.3 388,497 - -0.3 388,511 - -0.5 388,589 - -2.6 388,597 + -0.0 388,605 - -0.2 388,708 + Synpcc7942_0395 0.19 -3.0 388,708 + Synpcc7942_0395 0.19 -1.6 388,708 + Synpcc7942_0395 0.19 -2.6 388,715 + Synpcc7942_0395 0.20 +0.1 388,716 - Synpcc7942_0395 0.20 -2.6 388,736 + Synpcc7942_0395 0.22 -3.0 388,736 + Synpcc7942_0395 0.22 -3.3 388,744 + Synpcc7942_0395 0.22 +0.8 388,752 - Synpcc7942_0395 0.23 +0.8 388,752 - Synpcc7942_0395 0.23 -2.6 388,752 - Synpcc7942_0395 0.23 -1.6 388,778 + Synpcc7942_0395 0.25 -3.3 388,867 + Synpcc7942_0395 0.33 -2.6 388,867 + Synpcc7942_0395 0.33 -2.0 388,875 - Synpcc7942_0395 0.34 -2.0 388,875 - Synpcc7942_0395 0.34 +0.4 388,900 + Synpcc7942_0395 0.36 -1.0 388,925 + Synpcc7942_0395 0.38 -2.6 388,964 + Synpcc7942_0395 0.42 -3.6 388,974 + Synpcc7942_0395 0.43 -1.0 388,999 - Synpcc7942_0395 0.45 -0.6 389,093 + Synpcc7942_0395 0.53 -2.0 389,149 + Synpcc7942_0395 0.58 -1.3 389,149 + Synpcc7942_0395 0.58 +1.7 389,157 - Synpcc7942_0395 0.59 -2.0 389,296 - Synpcc7942_0395 0.71 -2.0 389,305 + Synpcc7942_0395 0.72 -3.0 389,307 + Synpcc7942_0395 0.72 -2.0 389,313 - Synpcc7942_0395 0.73 +0.3 389,313 - Synpcc7942_0395 0.73 -2.6 389,319 + -2.0 389,321 - Synpcc7942_0395 0.74 -2.0 389,326 + Synpcc7942_0395 0.74 -3.6 389,327 - Synpcc7942_0395 0.74 -2.0 389,327 - Synpcc7942_0395 0.74 -3.2 389,327 - Synpcc7942_0395 0.74 +1.0 389,327 - Synpcc7942_0395 0.74 +0.2 389,349 + Synpcc7942_0395 0.76 -2.0 389,394 - Synpcc7942_0395 0.80 -3.3 389,442 + Synpcc7942_0395 0.84 -2.0 389,469 - Synpcc7942_0395 0.87 -3.0 389,508 - -3.3 389,576 - -2.0 389,600 - -2.6 389,605 - +0.1 389,619 + +1.0 389,622 - +1.2 389,624 + +1.0 389,627 - -1.0 389,631 + +1.2 389,639 - -0.8 389,639 - +0.4 389,639 - -1.0 389,668 + -0.1 389,675 - +1.4 389,676 - +2.1 389,680 + +1.8 389,680 + +0.6 389,688 - -2.0 389,703 + +1.7 389,704 - +0.6 389,711 - -0.3 389,726 - -0.3 389,854 + -3.3 389,873 - +1.0
Or see this region's nucleotide sequence