Experiment: nitrate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0344 and birA are separated by 84 nucleotides birA and Synpcc7942_0346 are separated by 45 nucleotides Synpcc7942_0346 and Synpcc7942_0347 are separated by 156 nucleotides
Synpcc7942_0344: Synpcc7942_0344 - probable peptidase, at 337,408 to 338,451
_0344
Synpcc7942_0345: birA - Biotin--acetyl-CoA-carboxylase ligase, at 338,536 to 339,306
birA
Synpcc7942_0346: Synpcc7942_0346 - Protein of unknown function DUF152, at 339,352 to 340,131
_0346
Synpcc7942_0347: Synpcc7942_0347 - hypothetical protein, at 340,288 to 340,452
_0347
Position (kb) 338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 337.540 kb on + strand, within Synpcc7942_0344 at 337.563 kb on - strand, within Synpcc7942_0344 at 337.593 kb on - strand, within Synpcc7942_0344 at 337.707 kb on + strand, within Synpcc7942_0344 at 337.719 kb on - strand, within Synpcc7942_0344 at 337.814 kb on + strand, within Synpcc7942_0344 at 337.821 kb on - strand, within Synpcc7942_0344 at 337.821 kb on - strand, within Synpcc7942_0344 at 337.846 kb on + strand, within Synpcc7942_0344 at 337.854 kb on - strand, within Synpcc7942_0344 at 337.854 kb on - strand, within Synpcc7942_0344 at 337.870 kb on + strand, within Synpcc7942_0344 at 337.870 kb on + strand, within Synpcc7942_0344 at 337.880 kb on + strand at 337.951 kb on - strand, within Synpcc7942_0344 at 337.958 kb on + strand, within Synpcc7942_0344 at 337.966 kb on - strand, within Synpcc7942_0344 at 337.980 kb on + strand, within Synpcc7942_0344 at 338.009 kb on + strand, within Synpcc7942_0344 at 338.009 kb on + strand, within Synpcc7942_0344 at 338.017 kb on - strand, within Synpcc7942_0344 at 338.042 kb on - strand, within Synpcc7942_0344 at 338.046 kb on - strand, within Synpcc7942_0344 at 338.121 kb on - strand, within Synpcc7942_0344 at 338.220 kb on + strand, within Synpcc7942_0344 at 338.281 kb on + strand, within Synpcc7942_0344 at 338.320 kb on - strand, within Synpcc7942_0344 at 338.320 kb on - strand, within Synpcc7942_0344 at 338.331 kb on - strand, within Synpcc7942_0344 at 338.379 kb on - strand at 338.402 kb on + strand at 338.405 kb on - strand at 338.421 kb on - strand at 338.435 kb on - strand at 338.435 kb on - strand at 338.437 kb on - strand at 338.446 kb on + strand at 338.454 kb on - strand at 338.454 kb on - strand at 338.463 kb on - strand at 338.464 kb on - strand at 338.480 kb on + strand at 338.485 kb on - strand at 338.488 kb on - strand at 338.492 kb on + strand at 338.492 kb on + strand at 338.515 kb on - strand at 338.534 kb on + strand at 338.566 kb on - strand at 339.336 kb on + strand at 339.344 kb on + strand at 339.371 kb on - strand at 339.532 kb on - strand, within Synpcc7942_0346 at 339.544 kb on + strand, within Synpcc7942_0346 at 339.600 kb on + strand, within Synpcc7942_0346 at 339.628 kb on + strand, within Synpcc7942_0346 at 339.653 kb on + strand, within Synpcc7942_0346 at 339.686 kb on + strand, within Synpcc7942_0346 at 339.689 kb on - strand, within Synpcc7942_0346 at 339.830 kb on - strand, within Synpcc7942_0346 at 339.830 kb on - strand, within Synpcc7942_0346 at 339.847 kb on + strand, within Synpcc7942_0346 at 339.937 kb on + strand, within Synpcc7942_0346 at 340.034 kb on - strand, within Synpcc7942_0346 at 340.095 kb on + strand at 340.140 kb on + strand at 340.196 kb on - strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.230 kb on - strand at 340.230 kb on - strand at 340.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 25 mM remove 337,540 + Synpcc7942_0344 0.13 +0.9 337,563 - Synpcc7942_0344 0.15 +0.3 337,593 - Synpcc7942_0344 0.18 -1.0 337,707 + Synpcc7942_0344 0.29 -2.0 337,719 - Synpcc7942_0344 0.30 -0.0 337,814 + Synpcc7942_0344 0.39 +2.4 337,821 - Synpcc7942_0344 0.40 +1.4 337,821 - Synpcc7942_0344 0.40 -0.0 337,846 + Synpcc7942_0344 0.42 +2.3 337,854 - Synpcc7942_0344 0.43 +0.3 337,854 - Synpcc7942_0344 0.43 +1.0 337,870 + Synpcc7942_0344 0.44 +1.9 337,870 + Synpcc7942_0344 0.44 +0.2 337,880 + -1.0 337,951 - Synpcc7942_0344 0.52 +0.6 337,958 + Synpcc7942_0344 0.53 +2.2 337,966 - Synpcc7942_0344 0.53 -1.0 337,980 + Synpcc7942_0344 0.55 -2.0 338,009 + Synpcc7942_0344 0.58 -1.0 338,009 + Synpcc7942_0344 0.58 +0.3 338,017 - Synpcc7942_0344 0.58 +0.8 338,042 - Synpcc7942_0344 0.61 +0.3 338,046 - Synpcc7942_0344 0.61 +0.3 338,121 - Synpcc7942_0344 0.68 +1.8 338,220 + Synpcc7942_0344 0.78 -2.0 338,281 + Synpcc7942_0344 0.84 +1.5 338,320 - Synpcc7942_0344 0.87 -0.8 338,320 - Synpcc7942_0344 0.87 +3.2 338,331 - Synpcc7942_0344 0.88 -0.0 338,379 - -0.6 338,402 + -0.0 338,405 - +2.2 338,421 - -2.6 338,435 - +2.3 338,435 - +2.4 338,437 - -2.0 338,446 + -1.0 338,454 - -2.0 338,454 - -1.0 338,463 - +2.7 338,464 - +0.9 338,480 + +0.6 338,485 - -1.6 338,488 - -1.4 338,492 + +1.4 338,492 + +2.8 338,515 - -0.6 338,534 + +1.3 338,566 - +3.2 339,336 + -1.0 339,344 + +0.6 339,371 - +0.7 339,532 - Synpcc7942_0346 0.23 -2.0 339,544 + Synpcc7942_0346 0.25 -1.0 339,600 + Synpcc7942_0346 0.32 -0.0 339,628 + Synpcc7942_0346 0.35 -1.0 339,653 + Synpcc7942_0346 0.39 -2.0 339,686 + Synpcc7942_0346 0.43 -3.3 339,689 - Synpcc7942_0346 0.43 -1.0 339,830 - Synpcc7942_0346 0.61 -2.0 339,830 - Synpcc7942_0346 0.61 -2.0 339,847 + Synpcc7942_0346 0.63 -1.0 339,937 + Synpcc7942_0346 0.75 -3.0 340,034 - Synpcc7942_0346 0.87 -2.6 340,095 + -1.0 340,140 + +2.0 340,196 - -2.6 340,222 + -0.3 340,222 + +0.1 340,222 + -2.0 340,222 + -3.6 340,222 + -2.0 340,230 - +0.3 340,230 - -2.0 340,230 - -2.0
Or see this region's nucleotide sequence