Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0282

Experiment: nitrate 25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0281 and glyA are separated by 22 nucleotidesglyA and Synpcc7942_0283 are separated by 196 nucleotides Synpcc7942_0281: Synpcc7942_0281 - probable glycosyltransferase, at 277,043 to 278,116 _0281 Synpcc7942_0282: glyA - serine hydroxymethyltransferase, at 278,139 to 279,422 glyA Synpcc7942_0283: Synpcc7942_0283 - Dihydrouridine synthase TIM-barrel protein nifR3, at 279,619 to 280,623 _0283 Position (kb) 278 279 280Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 278.112 kb on + strandat 279.441 kb on + strandat 279.534 kb on + strandat 279.534 kb on + strandat 279.591 kb on + strandat 279.599 kb on - strandat 279.599 kb on - strandat 279.599 kb on - strandat 279.615 kb on + strandat 279.615 kb on + strandat 279.623 kb on - strandat 279.627 kb on + strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.635 kb on - strandat 279.650 kb on + strandat 279.662 kb on + strandat 279.668 kb on - strandat 279.672 kb on + strandat 279.688 kb on - strandat 279.702 kb on + strandat 279.702 kb on + strandat 279.702 kb on + strandat 279.710 kb on - strandat 279.710 kb on - strandat 279.710 kb on - strandat 279.710 kb on - strandat 279.736 kb on + strand, within Synpcc7942_0283at 279.736 kb on + strand, within Synpcc7942_0283at 279.738 kb on - strand, within Synpcc7942_0283at 279.754 kb on + strand, within Synpcc7942_0283at 279.773 kb on + strand, within Synpcc7942_0283at 279.781 kb on - strand, within Synpcc7942_0283at 279.782 kb on + strand, within Synpcc7942_0283at 279.790 kb on - strand, within Synpcc7942_0283at 279.790 kb on - strand, within Synpcc7942_0283at 279.803 kb on + strand, within Synpcc7942_0283at 279.812 kb on + strand, within Synpcc7942_0283at 279.831 kb on + strand, within Synpcc7942_0283at 279.839 kb on - strand, within Synpcc7942_0283at 279.868 kb on + strand, within Synpcc7942_0283at 279.893 kb on + strand, within Synpcc7942_0283at 279.927 kb on - strand, within Synpcc7942_0283at 279.950 kb on - strand, within Synpcc7942_0283at 279.971 kb on - strand, within Synpcc7942_0283at 279.976 kb on + strand, within Synpcc7942_0283at 280.013 kb on + strand, within Synpcc7942_0283at 280.021 kb on - strand, within Synpcc7942_0283at 280.023 kb on + strand, within Synpcc7942_0283at 280.023 kb on + strand, within Synpcc7942_0283at 280.023 kb on + strand, within Synpcc7942_0283at 280.028 kb on + strand, within Synpcc7942_0283at 280.031 kb on - strand, within Synpcc7942_0283at 280.041 kb on - strand, within Synpcc7942_0283at 280.043 kb on + strand, within Synpcc7942_0283at 280.052 kb on + strand, within Synpcc7942_0283at 280.052 kb on + strand, within Synpcc7942_0283at 280.052 kb on + strand, within Synpcc7942_0283at 280.060 kb on - strand, within Synpcc7942_0283at 280.064 kb on - strand, within Synpcc7942_0283at 280.075 kb on + strand, within Synpcc7942_0283at 280.075 kb on + strand, within Synpcc7942_0283at 280.075 kb on + strand, within Synpcc7942_0283at 280.077 kb on + strandat 280.092 kb on + strand, within Synpcc7942_0283at 280.114 kb on - strand, within Synpcc7942_0283at 280.116 kb on + strand, within Synpcc7942_0283at 280.125 kb on + strand, within Synpcc7942_0283at 280.134 kb on - strand, within Synpcc7942_0283at 280.134 kb on - strand, within Synpcc7942_0283at 280.134 kb on - strand, within Synpcc7942_0283at 280.159 kb on + strand, within Synpcc7942_0283at 280.159 kb on + strand, within Synpcc7942_0283at 280.168 kb on - strand, within Synpcc7942_0283at 280.205 kb on - strand, within Synpcc7942_0283at 280.216 kb on + strand, within Synpcc7942_0283at 280.216 kb on + strand, within Synpcc7942_0283at 280.229 kb on - strand, within Synpcc7942_0283at 280.266 kb on + strand, within Synpcc7942_0283at 280.271 kb on - strand, within Synpcc7942_0283at 280.276 kb on - strand, within Synpcc7942_0283at 280.283 kb on + strand, within Synpcc7942_0283at 280.283 kb on + strand, within Synpcc7942_0283at 280.291 kb on - strand, within Synpcc7942_0283at 280.295 kb on - strand, within Synpcc7942_0283at 280.296 kb on - strand, within Synpcc7942_0283at 280.296 kb on - strand, within Synpcc7942_0283at 280.342 kb on - strand, within Synpcc7942_0283at 280.363 kb on + strand, within Synpcc7942_0283

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 25 mM
remove
278,112 + +2.5
279,441 + -5.4
279,534 + -2.0
279,534 + -3.8
279,591 + +0.0
279,599 - +0.5
279,599 - -1.0
279,599 - -0.5
279,615 + +0.5
279,615 + +0.4
279,623 - -1.0
279,627 + +0.8
279,635 - -1.2
279,635 - +0.5
279,635 - +1.4
279,635 - -1.0
279,635 - -1.2
279,650 + -3.0
279,662 + +3.7
279,668 - +1.8
279,672 + +1.3
279,688 - -2.0
279,702 + -0.5
279,702 + -2.0
279,702 + -1.0
279,710 - -1.0
279,710 - -1.3
279,710 - +0.9
279,710 - -1.0
279,736 + Synpcc7942_0283 0.12 +0.1
279,736 + Synpcc7942_0283 0.12 +1.1
279,738 - Synpcc7942_0283 0.12 -1.0
279,754 + Synpcc7942_0283 0.13 -0.7
279,773 + Synpcc7942_0283 0.15 -2.0
279,781 - Synpcc7942_0283 0.16 +1.1
279,782 + Synpcc7942_0283 0.16 +0.3
279,790 - Synpcc7942_0283 0.17 +1.8
279,790 - Synpcc7942_0283 0.17 +1.2
279,803 + Synpcc7942_0283 0.18 +1.0
279,812 + Synpcc7942_0283 0.19 -1.0
279,831 + Synpcc7942_0283 0.21 +0.5
279,839 - Synpcc7942_0283 0.22 -2.0
279,868 + Synpcc7942_0283 0.25 -0.2
279,893 + Synpcc7942_0283 0.27 +1.3
279,927 - Synpcc7942_0283 0.31 +1.8
279,950 - Synpcc7942_0283 0.33 +2.4
279,971 - Synpcc7942_0283 0.35 -0.6
279,976 + Synpcc7942_0283 0.36 +2.7
280,013 + Synpcc7942_0283 0.39 +2.7
280,021 - Synpcc7942_0283 0.40 +1.6
280,023 + Synpcc7942_0283 0.40 -2.6
280,023 + Synpcc7942_0283 0.40 +1.8
280,023 + Synpcc7942_0283 0.40 -1.0
280,028 + Synpcc7942_0283 0.41 -1.0
280,031 - Synpcc7942_0283 0.41 +0.9
280,041 - Synpcc7942_0283 0.42 +0.5
280,043 + Synpcc7942_0283 0.42 -1.6
280,052 + Synpcc7942_0283 0.43 +0.0
280,052 + Synpcc7942_0283 0.43 +3.1
280,052 + Synpcc7942_0283 0.43 +1.3
280,060 - Synpcc7942_0283 0.44 +1.7
280,064 - Synpcc7942_0283 0.44 -1.0
280,075 + Synpcc7942_0283 0.45 +0.5
280,075 + Synpcc7942_0283 0.45 -0.0
280,075 + Synpcc7942_0283 0.45 +3.7
280,077 + +1.8
280,092 + Synpcc7942_0283 0.47 -0.0
280,114 - Synpcc7942_0283 0.49 -0.0
280,116 + Synpcc7942_0283 0.49 -3.4
280,125 + Synpcc7942_0283 0.50 -1.0
280,134 - Synpcc7942_0283 0.51 -0.3
280,134 - Synpcc7942_0283 0.51 +1.4
280,134 - Synpcc7942_0283 0.51 +0.4
280,159 + Synpcc7942_0283 0.54 -1.0
280,159 + Synpcc7942_0283 0.54 +1.9
280,168 - Synpcc7942_0283 0.55 +0.5
280,205 - Synpcc7942_0283 0.58 -2.0
280,216 + Synpcc7942_0283 0.59 -0.8
280,216 + Synpcc7942_0283 0.59 +0.3
280,229 - Synpcc7942_0283 0.61 +1.8
280,266 + Synpcc7942_0283 0.64 +1.9
280,271 - Synpcc7942_0283 0.65 -0.3
280,276 - Synpcc7942_0283 0.65 +1.4
280,283 + Synpcc7942_0283 0.66 -0.0
280,283 + Synpcc7942_0283 0.66 +2.4
280,291 - Synpcc7942_0283 0.67 +1.1
280,295 - Synpcc7942_0283 0.67 +1.5
280,296 - Synpcc7942_0283 0.67 +2.0
280,296 - Synpcc7942_0283 0.67 -2.4
280,342 - Synpcc7942_0283 0.72 -1.0
280,363 + Synpcc7942_0283 0.74 +2.5

Or see this region's nucleotide sequence