Experiment: nitrate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0047 and Synpcc7942_0048 are separated by 45 nucleotides Synpcc7942_0048 and pilA are separated by 188 nucleotides pilA and Synpcc7942_0050 are separated by 85 nucleotides
Synpcc7942_0047: Synpcc7942_0047 - TPR repeat, at 46,515 to 48,881
_0047
Synpcc7942_0048: Synpcc7942_0048 - pilin polypeptide PilA-like, at 48,927 to 49,361
_0048
Synpcc7942_0049: pilA - pilin polypeptide PilA-like, at 49,550 to 49,984
pilA
Synpcc7942_0050: Synpcc7942_0050 - hypothetical protein, at 50,070 to 52,616
_0050
Position (kb) 49
50 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 48.556 kb on + strand, within Synpcc7942_0047 at 48.579 kb on + strand, within Synpcc7942_0047 at 48.586 kb on + strand, within Synpcc7942_0047 at 48.626 kb on + strand, within Synpcc7942_0047 at 48.632 kb on - strand, within Synpcc7942_0047 at 48.634 kb on - strand, within Synpcc7942_0047 at 48.643 kb on + strand, within Synpcc7942_0047 at 48.693 kb on - strand at 48.706 kb on - strand at 48.710 kb on - strand at 48.722 kb on + strand at 48.845 kb on + strand at 49.092 kb on - strand, within Synpcc7942_0048 at 49.382 kb on - strand at 49.650 kb on + strand, within pilA at 49.680 kb on + strand, within pilA at 49.688 kb on - strand, within pilA at 49.698 kb on - strand, within pilA at 49.809 kb on + strand, within pilA at 49.822 kb on - strand, within pilA at 49.995 kb on - strand at 50.013 kb on - strand at 50.022 kb on + strand at 50.107 kb on - strand at 50.124 kb on + strand at 50.191 kb on + strand at 50.207 kb on + strand at 50.207 kb on + strand at 50.207 kb on + strand at 50.212 kb on + strand at 50.215 kb on - strand at 50.215 kb on - strand at 50.220 kb on - strand at 50.231 kb on + strand at 50.239 kb on - strand at 50.301 kb on + strand at 50.301 kb on + strand at 50.309 kb on - strand at 50.372 kb on + strand, within Synpcc7942_0050 at 50.372 kb on + strand, within Synpcc7942_0050 at 50.372 kb on + strand, within Synpcc7942_0050 at 50.562 kb on - strand, within Synpcc7942_0050 at 50.577 kb on - strand, within Synpcc7942_0050 at 50.702 kb on - strand, within Synpcc7942_0050 at 50.871 kb on - strand, within Synpcc7942_0050 at 50.915 kb on - strand, within Synpcc7942_0050 at 50.915 kb on - strand, within Synpcc7942_0050 at 50.930 kb on + strand, within Synpcc7942_0050 at 50.931 kb on - strand, within Synpcc7942_0050 at 50.948 kb on + strand, within Synpcc7942_0050 at 50.956 kb on - strand, within Synpcc7942_0050 at 50.981 kb on + strand, within Synpcc7942_0050
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 25 mM remove 48,556 + Synpcc7942_0047 0.86 +0.3 48,579 + Synpcc7942_0047 0.87 +1.4 48,586 + Synpcc7942_0047 0.87 +1.4 48,626 + Synpcc7942_0047 0.89 -1.1 48,632 - Synpcc7942_0047 0.89 +1.2 48,634 - Synpcc7942_0047 0.90 +1.4 48,643 + Synpcc7942_0047 0.90 +2.5 48,693 - +1.4 48,706 - +0.6 48,710 - +3.7 48,722 + -1.1 48,845 + -1.1 49,092 - Synpcc7942_0048 0.38 -0.5 49,382 - +1.3 49,650 + pilA Synpcc7942_0049 0.23 -1.5 49,680 + pilA Synpcc7942_0049 0.30 -0.3 49,688 - pilA Synpcc7942_0049 0.32 -2.8 49,698 - pilA Synpcc7942_0049 0.34 -1.1 49,809 + pilA Synpcc7942_0049 0.60 -4.2 49,822 - pilA Synpcc7942_0049 0.63 -0.3 49,995 - -1.2 50,013 - -0.1 50,022 + -2.7 50,107 - +0.9 50,124 + +0.2 50,191 + -0.1 50,207 + -2.1 50,207 + -2.1 50,207 + +2.2 50,212 + -1.5 50,215 - +0.1 50,215 - +1.6 50,220 - -2.7 50,231 + -1.1 50,239 - -1.1 50,301 + -1.6 50,301 + -0.0 50,309 - +1.0 50,372 + Synpcc7942_0050 0.12 -2.1 50,372 + Synpcc7942_0050 0.12 +0.5 50,372 + Synpcc7942_0050 0.12 -1.1 50,562 - Synpcc7942_0050 0.19 -0.3 50,577 - Synpcc7942_0050 0.20 +2.0 50,702 - Synpcc7942_0050 0.25 -2.7 50,871 - Synpcc7942_0050 0.31 -1.1 50,915 - Synpcc7942_0050 0.33 -1.1 50,915 - Synpcc7942_0050 0.33 -1.2 50,930 + Synpcc7942_0050 0.34 -1.1 50,931 - Synpcc7942_0050 0.34 +1.6 50,948 + Synpcc7942_0050 0.34 -3.1 50,956 - Synpcc7942_0050 0.35 +2.4 50,981 + Synpcc7942_0050 0.36 +0.1
Or see this region's nucleotide sequence