Experiment: PYE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02463 and CCNA_02464 are separated by 2 nucleotides CCNA_02464 and CCNA_R0060 are separated by 676 nucleotides
CCNA_02463: CCNA_02463 - UDP-N-acetylglucosamine 4-epimerase, at 2,605,030 to 2,606,004
_02463
CCNA_02464: CCNA_02464 - UDP-glucose 6-dehydrogenase, at 2,606,007 to 2,607,314
_02464
CCNA_R0060: CCNA_R0060 - tRNA-Cys, at 2,607,991 to 2,608,064
_R0060
Position (kb)
2606
2607
2608 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2605.015 kb on + strand at 2605.023 kb on - strand at 2605.023 kb on - strand at 2605.035 kb on - strand at 2605.044 kb on + strand at 2606.030 kb on + strand at 2606.103 kb on - strand at 2606.115 kb on - strand at 2606.115 kb on - strand at 2606.479 kb on + strand, within CCNA_02464 at 2606.479 kb on + strand, within CCNA_02464 at 2606.479 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.494 kb on + strand, within CCNA_02464 at 2606.559 kb on - strand, within CCNA_02464 at 2606.848 kb on + strand, within CCNA_02464 at 2607.339 kb on + strand at 2607.378 kb on - strand at 2607.378 kb on - strand at 2607.383 kb on - strand at 2607.389 kb on + strand at 2607.389 kb on + strand at 2607.389 kb on + strand at 2607.389 kb on + strand at 2607.395 kb on - strand at 2607.397 kb on - strand at 2607.397 kb on - strand at 2607.397 kb on - strand at 2607.397 kb on - strand at 2607.397 kb on - strand at 2607.399 kb on + strand at 2607.402 kb on - strand at 2607.407 kb on - strand at 2607.407 kb on - strand at 2607.407 kb on - strand at 2607.407 kb on - strand at 2607.444 kb on + strand at 2607.446 kb on - strand at 2607.482 kb on - strand at 2607.487 kb on - strand at 2607.491 kb on + strand at 2607.515 kb on + strand at 2607.527 kb on + strand at 2607.528 kb on + strand at 2607.557 kb on + strand at 2607.564 kb on + strand at 2607.564 kb on + strand at 2607.564 kb on + strand at 2607.569 kb on + strand at 2607.572 kb on - strand at 2607.572 kb on - strand at 2607.572 kb on - strand at 2607.572 kb on - strand at 2607.572 kb on - strand at 2607.577 kb on - strand at 2607.590 kb on - strand at 2607.615 kb on + strand at 2607.615 kb on + strand at 2607.623 kb on - strand at 2607.623 kb on - strand at 2607.634 kb on + strand at 2607.634 kb on + strand at 2607.635 kb on + strand at 2607.635 kb on + strand at 2607.642 kb on - strand at 2607.642 kb on - strand at 2607.642 kb on - strand at 2607.642 kb on - strand at 2607.642 kb on - strand at 2607.642 kb on - strand at 2607.643 kb on - strand at 2607.643 kb on - strand at 2607.676 kb on - strand at 2607.709 kb on + strand at 2607.725 kb on - strand at 2607.725 kb on - strand at 2607.753 kb on - strand at 2607.808 kb on - strand at 2607.818 kb on + strand at 2607.826 kb on + strand at 2607.890 kb on - strand at 2607.890 kb on - strand at 2607.890 kb on - strand at 2607.927 kb on - strand at 2608.078 kb on + strand at 2608.146 kb on + strand at 2608.171 kb on - strand at 2608.236 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE remove 2,605,015 + -1.7 2,605,023 - +1.0 2,605,023 - -0.4 2,605,035 - +0.7 2,605,044 + -0.6 2,606,030 + +0.1 2,606,103 - -0.6 2,606,115 - +0.3 2,606,115 - -0.1 2,606,479 + CCNA_02464 0.36 -1.4 2,606,479 + CCNA_02464 0.36 -1.7 2,606,479 + CCNA_02464 0.36 +0.4 2,606,494 + CCNA_02464 0.37 -1.2 2,606,494 + CCNA_02464 0.37 -0.8 2,606,494 + CCNA_02464 0.37 +0.1 2,606,494 + CCNA_02464 0.37 -1.0 2,606,559 - CCNA_02464 0.42 -1.6 2,606,848 + CCNA_02464 0.64 -2.9 2,607,339 + -2.1 2,607,378 - -0.4 2,607,378 - +0.9 2,607,383 - +0.1 2,607,389 + -1.1 2,607,389 + +0.6 2,607,389 + -0.3 2,607,389 + -1.2 2,607,395 - +0.9 2,607,397 - -0.1 2,607,397 - +1.7 2,607,397 - -0.4 2,607,397 - +0.6 2,607,397 - -0.7 2,607,399 + +0.1 2,607,402 - -0.7 2,607,407 - +0.2 2,607,407 - -0.1 2,607,407 - -0.2 2,607,407 - -0.9 2,607,444 + +0.1 2,607,446 - -0.5 2,607,482 - +0.1 2,607,487 - -1.7 2,607,491 + -2.6 2,607,515 + -2.0 2,607,527 + -0.1 2,607,528 + -2.5 2,607,557 + +1.1 2,607,564 + -0.5 2,607,564 + -1.0 2,607,564 + -1.4 2,607,569 + -0.5 2,607,572 - -0.1 2,607,572 - -0.0 2,607,572 - -0.3 2,607,572 - +0.3 2,607,572 - -1.6 2,607,577 - -1.4 2,607,590 - -0.9 2,607,615 + -0.2 2,607,615 + -0.8 2,607,623 - -1.6 2,607,623 - -2.6 2,607,634 + -0.1 2,607,634 + -0.0 2,607,635 + +1.3 2,607,635 + +1.8 2,607,642 - -0.7 2,607,642 - +1.1 2,607,642 - -1.9 2,607,642 - -0.4 2,607,642 - -0.0 2,607,642 - -0.5 2,607,643 - -1.6 2,607,643 - -2.0 2,607,676 - -1.9 2,607,709 + +1.1 2,607,725 - +0.1 2,607,725 - -0.0 2,607,753 - -0.8 2,607,808 - -0.9 2,607,818 + -1.3 2,607,826 + +0.1 2,607,890 - +0.6 2,607,890 - -0.1 2,607,890 - -1.5 2,607,927 - -1.9 2,608,078 + +1.7 2,608,146 + +0.3 2,608,171 - -1.1 2,608,236 + +1.2
Or see this region's nucleotide sequence