Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23535

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23520 and ABZR87_RS23525 are separated by 60 nucleotidesABZR87_RS23525 and ABZR87_RS23530 are separated by 22 nucleotidesABZR87_RS23530 and ABZR87_RS23535 are separated by 322 nucleotidesABZR87_RS23535 and ABZR87_RS23540 are separated by 5 nucleotides ABZR87_RS23520: ABZR87_RS23520 - sigma-54 dependent transcriptional regulator, at 1,636,647 to 1,637,750 _RS23520 ABZR87_RS23525: ABZR87_RS23525 - hypothetical protein, at 1,637,811 to 1,637,957 _RS23525 ABZR87_RS23530: ABZR87_RS23530 - hypothetical protein, at 1,637,980 to 1,638,378 _RS23530 ABZR87_RS23535: ABZR87_RS23535 - RNA polymerase factor sigma-54, at 1,638,701 to 1,640,203 _RS23535 ABZR87_RS23540: ABZR87_RS23540 - glycosyltransferase, at 1,640,209 to 1,641,423 _RS23540 Position (kb) 1638 1639 1640 1641Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1637.715 kb on + strandat 1637.781 kb on - strandat 1637.812 kb on + strandat 1637.982 kb on - strandat 1638.008 kb on + strandat 1638.015 kb on + strandat 1638.102 kb on + strand, within ABZR87_RS23530at 1638.102 kb on + strand, within ABZR87_RS23530at 1638.201 kb on + strand, within ABZR87_RS23530at 1638.201 kb on + strand, within ABZR87_RS23530at 1638.201 kb on + strand, within ABZR87_RS23530at 1638.201 kb on + strand, within ABZR87_RS23530at 1638.201 kb on + strand, within ABZR87_RS23530at 1638.202 kb on - strand, within ABZR87_RS23530at 1638.202 kb on - strand, within ABZR87_RS23530at 1638.202 kb on - strand, within ABZR87_RS23530at 1638.202 kb on - strand, within ABZR87_RS23530at 1638.202 kb on - strand, within ABZR87_RS23530at 1638.324 kb on + strand, within ABZR87_RS23530at 1638.451 kb on - strandat 1638.467 kb on + strandat 1638.468 kb on - strandat 1638.468 kb on - strandat 1638.548 kb on + strandat 1638.548 kb on + strandat 1638.548 kb on + strandat 1638.548 kb on + strandat 1638.549 kb on - strandat 1638.549 kb on - strandat 1638.550 kb on + strandat 1638.550 kb on + strandat 1638.550 kb on + strandat 1638.551 kb on - strandat 1638.551 kb on - strandat 1638.630 kb on + strandat 1639.041 kb on - strand, within ABZR87_RS23535at 1639.041 kb on - strand, within ABZR87_RS23535at 1639.041 kb on - strand, within ABZR87_RS23535at 1639.041 kb on - strand, within ABZR87_RS23535at 1639.041 kb on - strand, within ABZR87_RS23535at 1639.043 kb on + strand, within ABZR87_RS23535at 1639.043 kb on + strand, within ABZR87_RS23535at 1639.043 kb on + strand, within ABZR87_RS23535at 1639.043 kb on + strand, within ABZR87_RS23535at 1639.044 kb on - strand, within ABZR87_RS23535at 1639.044 kb on - strand, within ABZR87_RS23535at 1639.044 kb on - strand, within ABZR87_RS23535at 1639.152 kb on - strand, within ABZR87_RS23535at 1639.217 kb on + strand, within ABZR87_RS23535at 1639.283 kb on + strand, within ABZR87_RS23535at 1639.308 kb on + strand, within ABZR87_RS23535at 1639.309 kb on - strand, within ABZR87_RS23535at 1639.586 kb on + strand, within ABZR87_RS23535at 1639.586 kb on + strand, within ABZR87_RS23535at 1639.586 kb on + strand, within ABZR87_RS23535at 1639.587 kb on - strand, within ABZR87_RS23535at 1639.682 kb on + strand, within ABZR87_RS23535at 1639.683 kb on - strand, within ABZR87_RS23535at 1639.683 kb on - strand, within ABZR87_RS23535at 1639.683 kb on - strand, within ABZR87_RS23535at 1639.758 kb on + strand, within ABZR87_RS23535at 1639.759 kb on - strand, within ABZR87_RS23535at 1639.841 kb on + strand, within ABZR87_RS23535at 1639.841 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.937 kb on + strand, within ABZR87_RS23535at 1639.938 kb on - strand, within ABZR87_RS23535at 1639.938 kb on - strand, within ABZR87_RS23535at 1639.938 kb on - strand, within ABZR87_RS23535at 1639.973 kb on + strand, within ABZR87_RS23535at 1639.974 kb on - strand, within ABZR87_RS23535at 1639.974 kb on - strand, within ABZR87_RS23535at 1639.974 kb on - strand, within ABZR87_RS23535at 1640.153 kb on + strandat 1640.154 kb on - strandat 1640.154 kb on - strandat 1640.329 kb on + strandat 1640.492 kb on + strand, within ABZR87_RS23540at 1640.492 kb on + strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.493 kb on - strand, within ABZR87_RS23540at 1640.605 kb on + strand, within ABZR87_RS23540at 1640.605 kb on + strand, within ABZR87_RS23540at 1640.605 kb on + strand, within ABZR87_RS23540at 1640.606 kb on - strand, within ABZR87_RS23540at 1640.606 kb on - strand, within ABZR87_RS23540at 1640.674 kb on + strand, within ABZR87_RS23540at 1640.674 kb on + strand, within ABZR87_RS23540at 1640.674 kb on + strand, within ABZR87_RS23540at 1640.689 kb on + strand, within ABZR87_RS23540at 1640.689 kb on + strand, within ABZR87_RS23540at 1640.689 kb on + strand, within ABZR87_RS23540at 1640.690 kb on - strand, within ABZR87_RS23540at 1640.704 kb on - strand, within ABZR87_RS23540at 1640.873 kb on - strand, within ABZR87_RS23540at 1640.910 kb on - strand, within ABZR87_RS23540at 1640.910 kb on - strand, within ABZR87_RS23540at 1640.910 kb on - strand, within ABZR87_RS23540at 1641.010 kb on + strand, within ABZR87_RS23540at 1641.010 kb on + strand, within ABZR87_RS23540at 1641.010 kb on + strand, within ABZR87_RS23540at 1641.010 kb on + strand, within ABZR87_RS23540at 1641.010 kb on + strand, within ABZR87_RS23540at 1641.011 kb on - strand, within ABZR87_RS23540

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB
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1,637,715 + -0.1
1,637,781 - +0.9
1,637,812 + +0.5
1,637,982 - -0.8
1,638,008 + -1.5
1,638,015 + +0.1
1,638,102 + ABZR87_RS23530 0.31 -0.2
1,638,102 + ABZR87_RS23530 0.31 -0.2
1,638,201 + ABZR87_RS23530 0.55 -0.9
1,638,201 + ABZR87_RS23530 0.55 +0.0
1,638,201 + ABZR87_RS23530 0.55 -1.3
1,638,201 + ABZR87_RS23530 0.55 -1.1
1,638,201 + ABZR87_RS23530 0.55 -0.7
1,638,202 - ABZR87_RS23530 0.56 +1.2
1,638,202 - ABZR87_RS23530 0.56 -2.1
1,638,202 - ABZR87_RS23530 0.56 +0.3
1,638,202 - ABZR87_RS23530 0.56 +0.9
1,638,202 - ABZR87_RS23530 0.56 +0.4
1,638,324 + ABZR87_RS23530 0.86 +0.2
1,638,451 - +0.8
1,638,467 + -1.6
1,638,468 - -0.5
1,638,468 - -0.8
1,638,548 + +2.8
1,638,548 + +2.2
1,638,548 + -1.2
1,638,548 + +0.1
1,638,549 - -0.4
1,638,549 - +0.3
1,638,550 + -0.9
1,638,550 + +1.7
1,638,550 + -0.3
1,638,551 - +0.8
1,638,551 - -0.6
1,638,630 + -0.4
1,639,041 - ABZR87_RS23535 0.23 +2.2
1,639,041 - ABZR87_RS23535 0.23 +2.4
1,639,041 - ABZR87_RS23535 0.23 +2.1
1,639,041 - ABZR87_RS23535 0.23 +3.0
1,639,041 - ABZR87_RS23535 0.23 +2.3
1,639,043 + ABZR87_RS23535 0.23 +3.1
1,639,043 + ABZR87_RS23535 0.23 +4.1
1,639,043 + ABZR87_RS23535 0.23 +1.4
1,639,043 + ABZR87_RS23535 0.23 +1.5
1,639,044 - ABZR87_RS23535 0.23 +3.0
1,639,044 - ABZR87_RS23535 0.23 +3.1
1,639,044 - ABZR87_RS23535 0.23 +2.6
1,639,152 - ABZR87_RS23535 0.30 +2.0
1,639,217 + ABZR87_RS23535 0.34 +2.7
1,639,283 + ABZR87_RS23535 0.39 +4.5
1,639,308 + ABZR87_RS23535 0.40 +3.2
1,639,309 - ABZR87_RS23535 0.40 +3.9
1,639,586 + ABZR87_RS23535 0.59 +3.7
1,639,586 + ABZR87_RS23535 0.59 +1.7
1,639,586 + ABZR87_RS23535 0.59 +3.5
1,639,587 - ABZR87_RS23535 0.59 +5.2
1,639,682 + ABZR87_RS23535 0.65 +3.0
1,639,683 - ABZR87_RS23535 0.65 +2.7
1,639,683 - ABZR87_RS23535 0.65 +2.2
1,639,683 - ABZR87_RS23535 0.65 +2.8
1,639,758 + ABZR87_RS23535 0.70 +2.8
1,639,759 - ABZR87_RS23535 0.70 +3.7
1,639,841 + ABZR87_RS23535 0.76 +2.8
1,639,841 + ABZR87_RS23535 0.76 +2.9
1,639,937 + ABZR87_RS23535 0.82 +2.7
1,639,937 + ABZR87_RS23535 0.82 +1.4
1,639,937 + ABZR87_RS23535 0.82 +1.9
1,639,937 + ABZR87_RS23535 0.82 +2.3
1,639,937 + ABZR87_RS23535 0.82 +2.6
1,639,937 + ABZR87_RS23535 0.82 +3.2
1,639,938 - ABZR87_RS23535 0.82 +1.9
1,639,938 - ABZR87_RS23535 0.82 +3.7
1,639,938 - ABZR87_RS23535 0.82 +2.1
1,639,973 + ABZR87_RS23535 0.85 +0.7
1,639,974 - ABZR87_RS23535 0.85 +0.4
1,639,974 - ABZR87_RS23535 0.85 +2.7
1,639,974 - ABZR87_RS23535 0.85 +2.7
1,640,153 + +3.7
1,640,154 - +1.4
1,640,154 - +3.4
1,640,329 + +0.5
1,640,492 + ABZR87_RS23540 0.23 -1.3
1,640,492 + ABZR87_RS23540 0.23 -0.1
1,640,493 - ABZR87_RS23540 0.23 -1.6
1,640,493 - ABZR87_RS23540 0.23 +0.5
1,640,493 - ABZR87_RS23540 0.23 -0.1
1,640,493 - ABZR87_RS23540 0.23 -1.1
1,640,493 - ABZR87_RS23540 0.23 -0.3
1,640,493 - ABZR87_RS23540 0.23 +0.7
1,640,605 + ABZR87_RS23540 0.33 +0.4
1,640,605 + ABZR87_RS23540 0.33 +0.5
1,640,605 + ABZR87_RS23540 0.33 -0.8
1,640,606 - ABZR87_RS23540 0.33 -0.4
1,640,606 - ABZR87_RS23540 0.33 +0.3
1,640,674 + ABZR87_RS23540 0.38 +0.1
1,640,674 + ABZR87_RS23540 0.38 -0.3
1,640,674 + ABZR87_RS23540 0.38 -1.2
1,640,689 + ABZR87_RS23540 0.40 -0.4
1,640,689 + ABZR87_RS23540 0.40 -1.7
1,640,689 + ABZR87_RS23540 0.40 -1.9
1,640,690 - ABZR87_RS23540 0.40 -0.4
1,640,704 - ABZR87_RS23540 0.41 +0.9
1,640,873 - ABZR87_RS23540 0.55 -0.0
1,640,910 - ABZR87_RS23540 0.58 -0.4
1,640,910 - ABZR87_RS23540 0.58 -1.6
1,640,910 - ABZR87_RS23540 0.58 -0.5
1,641,010 + ABZR87_RS23540 0.66 -0.6
1,641,010 + ABZR87_RS23540 0.66 -0.1
1,641,010 + ABZR87_RS23540 0.66 +0.1
1,641,010 + ABZR87_RS23540 0.66 -0.2
1,641,010 + ABZR87_RS23540 0.66 -0.1
1,641,011 - ABZR87_RS23540 0.66 -0.2

Or see this region's nucleotide sequence