Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21555

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21550 and ABZR87_RS21555 are separated by 156 nucleotidesABZR87_RS21555 and ABZR87_RS21560 are separated by 91 nucleotidesABZR87_RS21560 and ABZR87_RS21565 are separated by 49 nucleotides ABZR87_RS21550: ABZR87_RS21550 - glyoxylate/hydroxypyruvate reductase A, at 1,218,245 to 1,219,177 _RS21550 ABZR87_RS21555: ABZR87_RS21555 - aspartate aminotransferase family protein, at 1,219,334 to 1,220,734 _RS21555 ABZR87_RS21560: ABZR87_RS21560 - Lrp/AsnC family transcriptional regulator, at 1,220,826 to 1,221,320 _RS21560 ABZR87_RS21565: ABZR87_RS21565 - cupin domain-containing protein, at 1,221,370 to 1,222,089 _RS21565 Position (kb) 1219 1220 1221Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1218.542 kb on + strand, within ABZR87_RS21550at 1218.542 kb on + strand, within ABZR87_RS21550at 1218.542 kb on + strand, within ABZR87_RS21550at 1218.543 kb on - strand, within ABZR87_RS21550at 1218.578 kb on - strand, within ABZR87_RS21550at 1218.587 kb on + strand, within ABZR87_RS21550at 1219.288 kb on - strandat 1219.743 kb on - strand, within ABZR87_RS21555at 1219.746 kb on + strand, within ABZR87_RS21555at 1219.877 kb on - strand, within ABZR87_RS21555at 1219.886 kb on + strand, within ABZR87_RS21555at 1219.886 kb on + strand, within ABZR87_RS21555at 1219.886 kb on + strand, within ABZR87_RS21555at 1219.887 kb on - strand, within ABZR87_RS21555at 1219.887 kb on - strand, within ABZR87_RS21555at 1219.907 kb on + strand, within ABZR87_RS21555at 1219.908 kb on - strand, within ABZR87_RS21555at 1220.222 kb on + strand, within ABZR87_RS21555at 1220.223 kb on - strand, within ABZR87_RS21555at 1220.262 kb on - strand, within ABZR87_RS21555at 1220.319 kb on - strand, within ABZR87_RS21555at 1220.319 kb on - strand, within ABZR87_RS21555at 1220.319 kb on - strand, within ABZR87_RS21555at 1220.319 kb on - strand, within ABZR87_RS21555at 1220.370 kb on - strand, within ABZR87_RS21555at 1220.370 kb on - strand, within ABZR87_RS21555at 1220.573 kb on + strand, within ABZR87_RS21555at 1220.640 kb on - strandat 1220.640 kb on - strandat 1220.801 kb on + strandat 1220.802 kb on - strandat 1220.802 kb on - strandat 1220.802 kb on - strandat 1220.802 kb on - strandat 1220.979 kb on + strand, within ABZR87_RS21560at 1220.979 kb on + strand, within ABZR87_RS21560at 1220.979 kb on + strand, within ABZR87_RS21560at 1220.979 kb on + strand, within ABZR87_RS21560at 1220.980 kb on - strand, within ABZR87_RS21560at 1220.991 kb on + strand, within ABZR87_RS21560at 1221.148 kb on - strand, within ABZR87_RS21560at 1221.189 kb on + strand, within ABZR87_RS21560at 1221.240 kb on + strand, within ABZR87_RS21560at 1221.241 kb on - strand, within ABZR87_RS21560at 1221.249 kb on + strand, within ABZR87_RS21560at 1221.250 kb on - strand, within ABZR87_RS21560at 1221.250 kb on - strand, within ABZR87_RS21560at 1221.555 kb on + strand, within ABZR87_RS21565at 1221.556 kb on - strand, within ABZR87_RS21565at 1221.681 kb on + strand, within ABZR87_RS21565at 1221.681 kb on + strand, within ABZR87_RS21565

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB
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1,218,542 + ABZR87_RS21550 0.32 -0.5
1,218,542 + ABZR87_RS21550 0.32 +0.3
1,218,542 + ABZR87_RS21550 0.32 +0.4
1,218,543 - ABZR87_RS21550 0.32 -0.6
1,218,578 - ABZR87_RS21550 0.36 +0.6
1,218,587 + ABZR87_RS21550 0.37 -0.6
1,219,288 - +0.9
1,219,743 - ABZR87_RS21555 0.29 +1.3
1,219,746 + ABZR87_RS21555 0.29 +1.0
1,219,877 - ABZR87_RS21555 0.39 +1.4
1,219,886 + ABZR87_RS21555 0.39 +1.5
1,219,886 + ABZR87_RS21555 0.39 +1.9
1,219,886 + ABZR87_RS21555 0.39 +1.9
1,219,887 - ABZR87_RS21555 0.39 +2.1
1,219,887 - ABZR87_RS21555 0.39 -0.4
1,219,907 + ABZR87_RS21555 0.41 +2.9
1,219,908 - ABZR87_RS21555 0.41 +1.2
1,220,222 + ABZR87_RS21555 0.63 +2.3
1,220,223 - ABZR87_RS21555 0.63 +1.6
1,220,262 - ABZR87_RS21555 0.66 +1.5
1,220,319 - ABZR87_RS21555 0.70 +1.9
1,220,319 - ABZR87_RS21555 0.70 +0.1
1,220,319 - ABZR87_RS21555 0.70 +2.2
1,220,319 - ABZR87_RS21555 0.70 +1.5
1,220,370 - ABZR87_RS21555 0.74 +2.1
1,220,370 - ABZR87_RS21555 0.74 +1.7
1,220,573 + ABZR87_RS21555 0.88 +1.9
1,220,640 - +2.3
1,220,640 - +1.9
1,220,801 + +0.2
1,220,802 - -0.0
1,220,802 - -0.0
1,220,802 - +0.7
1,220,802 - -2.3
1,220,979 + ABZR87_RS21560 0.31 +0.1
1,220,979 + ABZR87_RS21560 0.31 +1.0
1,220,979 + ABZR87_RS21560 0.31 +1.4
1,220,979 + ABZR87_RS21560 0.31 +1.2
1,220,980 - ABZR87_RS21560 0.31 -2.1
1,220,991 + ABZR87_RS21560 0.33 -0.7
1,221,148 - ABZR87_RS21560 0.65 +0.4
1,221,189 + ABZR87_RS21560 0.73 -0.3
1,221,240 + ABZR87_RS21560 0.84 +1.4
1,221,241 - ABZR87_RS21560 0.84 -0.3
1,221,249 + ABZR87_RS21560 0.85 -0.1
1,221,250 - ABZR87_RS21560 0.86 +0.1
1,221,250 - ABZR87_RS21560 0.86 -0.9
1,221,555 + ABZR87_RS21565 0.26 -0.2
1,221,556 - ABZR87_RS21565 0.26 -0.6
1,221,681 + ABZR87_RS21565 0.43 +0.6
1,221,681 + ABZR87_RS21565 0.43 +0.5

Or see this region's nucleotide sequence