Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20220 and ABZR87_RS20225 are separated by 78 nucleotides ABZR87_RS20225 and ABZR87_RS20230 are separated by 68 nucleotides ABZR87_RS20230 and ABZR87_RS20235 are separated by 105 nucleotides
ABZR87_RS20220: ABZR87_RS20220 - type VI secretion system baseplate subunit TssF, at 923,751 to 925,601
_RS20220
ABZR87_RS20225: ABZR87_RS20225 - type VI secretion system baseplate subunit TssE, at 925,680 to 926,153
_RS20225
ABZR87_RS20230: ABZR87_RS20230 - Hcp family type VI secretion system effector, at 926,222 to 926,725
_RS20230
ABZR87_RS20235: ABZR87_RS20235 - type VI secretion system contractile sheath large subunit, at 926,831 to 928,315
_RS20235
Position (kb) 926
927 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 925.357 kb on + strand, within ABZR87_RS20220 at 925.358 kb on - strand, within ABZR87_RS20220 at 925.358 kb on - strand, within ABZR87_RS20220 at 925.403 kb on - strand, within ABZR87_RS20220 at 925.579 kb on + strand at 925.579 kb on + strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.894 kb on + strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.948 kb on + strand, within ABZR87_RS20225 at 925.949 kb on - strand, within ABZR87_RS20225 at 925.949 kb on - strand, within ABZR87_RS20225 at 926.153 kb on + strand at 926.153 kb on + strand at 926.153 kb on + strand at 926.153 kb on + strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.161 kb on + strand at 926.161 kb on + strand at 926.310 kb on + strand, within ABZR87_RS20230 at 926.310 kb on + strand, within ABZR87_RS20230 at 926.311 kb on - strand, within ABZR87_RS20230 at 926.332 kb on - strand, within ABZR87_RS20230 at 926.424 kb on + strand, within ABZR87_RS20230 at 926.424 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.509 kb on - strand, within ABZR87_RS20230 at 926.712 kb on + strand at 926.712 kb on + strand at 926.712 kb on + strand at 926.712 kb on + strand at 926.713 kb on - strand at 926.713 kb on - strand at 926.716 kb on + strand at 926.717 kb on - strand at 926.717 kb on - strand at 926.719 kb on - strand at 926.726 kb on - strand at 926.726 kb on - strand at 926.726 kb on - strand at 926.726 kb on - strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.758 kb on + strand at 926.758 kb on + strand at 926.759 kb on - strand at 926.790 kb on + strand at 926.790 kb on + strand at 926.832 kb on + strand at 926.833 kb on - strand at 926.928 kb on + strand at 926.928 kb on + strand at 926.928 kb on + strand at 926.928 kb on + strand at 926.929 kb on - strand at 926.929 kb on - strand at 926.929 kb on - strand at 927.030 kb on + strand, within ABZR87_RS20235 at 927.030 kb on + strand, within ABZR87_RS20235 at 927.031 kb on - strand, within ABZR87_RS20235 at 927.118 kb on - strand, within ABZR87_RS20235 at 927.118 kb on - strand, within ABZR87_RS20235 at 927.147 kb on + strand, within ABZR87_RS20235 at 927.147 kb on + strand, within ABZR87_RS20235 at 927.147 kb on + strand, within ABZR87_RS20235 at 927.148 kb on - strand, within ABZR87_RS20235 at 927.198 kb on + strand, within ABZR87_RS20235 at 927.199 kb on - strand, within ABZR87_RS20235 at 927.199 kb on - strand, within ABZR87_RS20235 at 927.243 kb on + strand, within ABZR87_RS20235 at 927.244 kb on - strand, within ABZR87_RS20235 at 927.495 kb on + strand, within ABZR87_RS20235 at 927.495 kb on + strand, within ABZR87_RS20235 at 927.495 kb on + strand, within ABZR87_RS20235 at 927.496 kb on - strand, within ABZR87_RS20235 at 927.496 kb on - strand, within ABZR87_RS20235 at 927.571 kb on - strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.613 kb on - strand, within ABZR87_RS20235 at 927.655 kb on - strand, within ABZR87_RS20235 at 927.655 kb on - strand, within ABZR87_RS20235
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 925,357 + ABZR87_RS20220 0.87 -0.2 925,358 - ABZR87_RS20220 0.87 +0.2 925,358 - ABZR87_RS20220 0.87 +0.0 925,403 - ABZR87_RS20220 0.89 -1.6 925,579 + +0.2 925,579 + +0.4 925,580 - -0.8 925,580 - +0.2 925,580 - -0.2 925,580 - -1.1 925,580 - -0.5 925,894 + ABZR87_RS20225 0.45 +0.8 925,895 - ABZR87_RS20225 0.45 -0.1 925,895 - ABZR87_RS20225 0.45 +0.2 925,895 - ABZR87_RS20225 0.45 -0.1 925,895 - ABZR87_RS20225 0.45 +0.9 925,948 + ABZR87_RS20225 0.57 +0.7 925,949 - ABZR87_RS20225 0.57 -0.2 925,949 - ABZR87_RS20225 0.57 +0.3 926,153 + -2.0 926,153 + -0.6 926,153 + -1.7 926,153 + -2.2 926,154 - -0.7 926,154 - +0.3 926,154 - +1.4 926,154 - -1.1 926,154 - +0.8 926,154 - +0.5 926,161 + -0.5 926,161 + +0.1 926,310 + ABZR87_RS20230 0.17 -1.2 926,310 + ABZR87_RS20230 0.17 +0.3 926,311 - ABZR87_RS20230 0.18 +0.8 926,332 - ABZR87_RS20230 0.22 -0.0 926,424 + ABZR87_RS20230 0.40 +2.2 926,424 + ABZR87_RS20230 0.40 +11.3 926,508 + ABZR87_RS20230 0.57 +0.9 926,508 + ABZR87_RS20230 0.57 -0.4 926,508 + ABZR87_RS20230 0.57 -0.4 926,509 - ABZR87_RS20230 0.57 -0.3 926,712 + +1.0 926,712 + +2.6 926,712 + -0.3 926,712 + -2.1 926,713 - +1.6 926,713 - +0.3 926,716 + +1.0 926,717 - -1.9 926,717 - +1.2 926,719 - +0.8 926,726 - +0.0 926,726 - -0.0 926,726 - +0.1 926,726 - -0.4 926,743 + -0.1 926,743 + -3.4 926,743 + -1.6 926,743 + +0.3 926,743 + -0.1 926,758 + +1.2 926,758 + -1.1 926,759 - -0.5 926,790 + +3.2 926,790 + +0.6 926,832 + -0.3 926,833 - +1.0 926,928 + +1.2 926,928 + +0.1 926,928 + +1.1 926,928 + +2.2 926,929 - +0.5 926,929 - +1.4 926,929 - -1.4 927,030 + ABZR87_RS20235 0.13 +0.9 927,030 + ABZR87_RS20235 0.13 -1.4 927,031 - ABZR87_RS20235 0.13 -0.0 927,118 - ABZR87_RS20235 0.19 -1.5 927,118 - ABZR87_RS20235 0.19 +1.0 927,147 + ABZR87_RS20235 0.21 +0.8 927,147 + ABZR87_RS20235 0.21 -1.1 927,147 + ABZR87_RS20235 0.21 -1.9 927,148 - ABZR87_RS20235 0.21 +0.4 927,198 + ABZR87_RS20235 0.25 +0.1 927,199 - ABZR87_RS20235 0.25 +1.0 927,199 - ABZR87_RS20235 0.25 -0.5 927,243 + ABZR87_RS20235 0.28 +0.2 927,244 - ABZR87_RS20235 0.28 +1.0 927,495 + ABZR87_RS20235 0.45 -0.7 927,495 + ABZR87_RS20235 0.45 -1.0 927,495 + ABZR87_RS20235 0.45 +1.6 927,496 - ABZR87_RS20235 0.45 -1.4 927,496 - ABZR87_RS20235 0.45 +1.0 927,571 - ABZR87_RS20235 0.50 +0.1 927,612 + ABZR87_RS20235 0.53 -0.1 927,612 + ABZR87_RS20235 0.53 -0.4 927,612 + ABZR87_RS20235 0.53 -0.2 927,612 + ABZR87_RS20235 0.53 -0.3 927,612 + ABZR87_RS20235 0.53 +0.2 927,613 - ABZR87_RS20235 0.53 +1.5 927,655 - ABZR87_RS20235 0.55 -1.9 927,655 - ABZR87_RS20235 0.55 -0.2
Or see this region's nucleotide sequence