Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19625 and ABZR87_RS19630 are separated by 268 nucleotides ABZR87_RS19630 and ABZR87_RS19635 overlap by 4 nucleotides
ABZR87_RS19625: ABZR87_RS19625 - TonB-dependent siderophore receptor, at 775,114 to 777,234
_RS19625
ABZR87_RS19630: ABZR87_RS19630 - oxidoreductase, at 777,503 to 778,579
_RS19630
ABZR87_RS19635: ABZR87_RS19635 - cation:proton antiporter, at 778,576 to 780,687
_RS19635
Position (kb) 777
778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 776.577 kb on - strand, within ABZR87_RS19625 at 776.577 kb on - strand, within ABZR87_RS19625 at 776.577 kb on - strand, within ABZR87_RS19625 at 776.577 kb on - strand, within ABZR87_RS19625 at 776.777 kb on + strand, within ABZR87_RS19625 at 776.840 kb on + strand, within ABZR87_RS19625 at 776.870 kb on + strand, within ABZR87_RS19625 at 776.871 kb on - strand, within ABZR87_RS19625 at 776.871 kb on - strand, within ABZR87_RS19625 at 776.871 kb on - strand, within ABZR87_RS19625 at 777.086 kb on + strand at 777.086 kb on + strand at 777.087 kb on - strand at 777.087 kb on - strand at 777.246 kb on + strand at 777.258 kb on + strand at 777.258 kb on + strand at 777.258 kb on + strand at 777.258 kb on + strand at 777.259 kb on - strand at 777.531 kb on - strand at 777.531 kb on - strand at 778.391 kb on + strand, within ABZR87_RS19630 at 778.392 kb on - strand, within ABZR87_RS19630 at 778.392 kb on - strand, within ABZR87_RS19630 at 778.392 kb on - strand, within ABZR87_RS19630 at 778.394 kb on + strand, within ABZR87_RS19630 at 778.394 kb on + strand, within ABZR87_RS19630 at 778.395 kb on - strand, within ABZR87_RS19630 at 778.714 kb on + strand at 778.714 kb on + strand at 778.714 kb on + strand at 778.714 kb on + strand at 778.714 kb on + strand at 778.714 kb on + strand at 778.715 kb on - strand at 778.715 kb on - strand at 778.798 kb on + strand, within ABZR87_RS19635 at 778.798 kb on + strand, within ABZR87_RS19635 at 778.798 kb on + strand, within ABZR87_RS19635 at 778.799 kb on - strand, within ABZR87_RS19635 at 778.799 kb on - strand, within ABZR87_RS19635 at 778.799 kb on - strand, within ABZR87_RS19635 at 778.799 kb on - strand, within ABZR87_RS19635 at 778.799 kb on - strand, within ABZR87_RS19635 at 778.799 kb on - strand, within ABZR87_RS19635 at 778.799 kb on - strand, within ABZR87_RS19635 at 778.814 kb on + strand, within ABZR87_RS19635 at 779.314 kb on + strand, within ABZR87_RS19635 at 779.314 kb on + strand, within ABZR87_RS19635 at 779.315 kb on - strand, within ABZR87_RS19635 at 779.315 kb on - strand, within ABZR87_RS19635 at 779.315 kb on - strand, within ABZR87_RS19635 at 779.537 kb on + strand, within ABZR87_RS19635 at 779.537 kb on + strand, within ABZR87_RS19635
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 776,577 - ABZR87_RS19625 0.69 -0.6 776,577 - ABZR87_RS19625 0.69 -0.1 776,577 - ABZR87_RS19625 0.69 -0.6 776,577 - ABZR87_RS19625 0.69 +0.6 776,777 + ABZR87_RS19625 0.78 -0.1 776,840 + ABZR87_RS19625 0.81 -0.8 776,870 + ABZR87_RS19625 0.83 -0.5 776,871 - ABZR87_RS19625 0.83 -1.3 776,871 - ABZR87_RS19625 0.83 +1.1 776,871 - ABZR87_RS19625 0.83 +0.3 777,086 + -1.4 777,086 + +1.0 777,087 - +0.6 777,087 - +0.8 777,246 + -1.1 777,258 + -0.6 777,258 + -0.0 777,258 + -1.0 777,258 + -0.6 777,259 - -0.2 777,531 - -2.8 777,531 - -1.9 778,391 + ABZR87_RS19630 0.82 +0.5 778,392 - ABZR87_RS19630 0.83 +0.5 778,392 - ABZR87_RS19630 0.83 -2.1 778,392 - ABZR87_RS19630 0.83 +0.3 778,394 + ABZR87_RS19630 0.83 -0.5 778,394 + ABZR87_RS19630 0.83 -0.5 778,395 - ABZR87_RS19630 0.83 -1.6 778,714 + -0.5 778,714 + +0.5 778,714 + -0.2 778,714 + +0.6 778,714 + +2.4 778,714 + -2.5 778,715 - -0.6 778,715 - -0.4 778,798 + ABZR87_RS19635 0.11 -1.0 778,798 + ABZR87_RS19635 0.11 +1.0 778,798 + ABZR87_RS19635 0.11 -1.0 778,799 - ABZR87_RS19635 0.11 +0.3 778,799 - ABZR87_RS19635 0.11 -2.6 778,799 - ABZR87_RS19635 0.11 +0.0 778,799 - ABZR87_RS19635 0.11 -0.0 778,799 - ABZR87_RS19635 0.11 +0.1 778,799 - ABZR87_RS19635 0.11 -0.5 778,799 - ABZR87_RS19635 0.11 +0.4 778,814 + ABZR87_RS19635 0.11 +0.1 779,314 + ABZR87_RS19635 0.35 +0.9 779,314 + ABZR87_RS19635 0.35 -0.0 779,315 - ABZR87_RS19635 0.35 +0.0 779,315 - ABZR87_RS19635 0.35 +0.8 779,315 - ABZR87_RS19635 0.35 -0.4 779,537 + ABZR87_RS19635 0.46 -0.6 779,537 + ABZR87_RS19635 0.46 +0.4
Or see this region's nucleotide sequence