Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19585 and ABZR87_RS19590 are separated by 170 nucleotides ABZR87_RS19590 and ABZR87_RS19595 are separated by 59 nucleotides ABZR87_RS19595 and ABZR87_RS19600 are separated by 152 nucleotides ABZR87_RS19600 and ABZR87_RS19605 are separated by 48 nucleotides
ABZR87_RS19585: ABZR87_RS19585 - cytochrome P450, at 765,935 to 769,174
_RS19585
ABZR87_RS19590: ABZR87_RS19590 - hypothetical protein, at 769,345 to 769,635
_RS19590
ABZR87_RS19595: ABZR87_RS19595 - Gfo/Idh/MocA family oxidoreductase, at 769,695 to 770,849
_RS19595
ABZR87_RS19600: ABZR87_RS19600 - antibiotic biosynthesis monooxygenase, at 771,002 to 771,346
_RS19600
ABZR87_RS19605: ABZR87_RS19605 - cytochrome P450, at 771,395 to 772,528
_RS19605
Position (kb) 769
770
771 Strain fitness (log2 ratio) -2
-1
0
1
2 at 768.864 kb on - strand at 768.921 kb on - strand at 768.986 kb on - strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.408 kb on + strand, within ABZR87_RS19590 at 769.409 kb on - strand, within ABZR87_RS19590 at 769.409 kb on - strand, within ABZR87_RS19590 at 769.409 kb on - strand, within ABZR87_RS19590 at 769.420 kb on + strand, within ABZR87_RS19590 at 769.420 kb on + strand, within ABZR87_RS19590 at 769.423 kb on - strand, within ABZR87_RS19590 at 769.633 kb on + strand at 769.633 kb on + strand at 769.633 kb on + strand at 769.696 kb on + strand at 769.697 kb on - strand at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.922 kb on - strand, within ABZR87_RS19595 at 769.922 kb on - strand, within ABZR87_RS19595 at 769.996 kb on + strand, within ABZR87_RS19595 at 769.997 kb on - strand, within ABZR87_RS19595 at 770.090 kb on - strand, within ABZR87_RS19595 at 770.245 kb on + strand, within ABZR87_RS19595 at 770.245 kb on + strand, within ABZR87_RS19595 at 770.246 kb on - strand, within ABZR87_RS19595 at 770.246 kb on - strand, within ABZR87_RS19595 at 770.278 kb on + strand, within ABZR87_RS19595 at 770.279 kb on - strand, within ABZR87_RS19595 at 770.539 kb on + strand, within ABZR87_RS19595 at 770.540 kb on - strand, within ABZR87_RS19595 at 770.540 kb on - strand, within ABZR87_RS19595 at 770.540 kb on - strand, within ABZR87_RS19595 at 770.572 kb on + strand, within ABZR87_RS19595 at 770.611 kb on + strand, within ABZR87_RS19595 at 770.611 kb on + strand, within ABZR87_RS19595 at 770.611 kb on + strand, within ABZR87_RS19595 at 770.612 kb on - strand, within ABZR87_RS19595 at 770.612 kb on - strand, within ABZR87_RS19595 at 770.612 kb on - strand, within ABZR87_RS19595 at 770.620 kb on + strand, within ABZR87_RS19595 at 770.773 kb on + strand at 770.774 kb on - strand at 770.795 kb on + strand at 770.844 kb on - strand at 770.933 kb on - strand at 771.294 kb on + strand, within ABZR87_RS19600 at 771.294 kb on + strand, within ABZR87_RS19600 at 771.294 kb on + strand, within ABZR87_RS19600 at 771.295 kb on - strand, within ABZR87_RS19600 at 771.295 kb on - strand, within ABZR87_RS19600 at 771.295 kb on - strand, within ABZR87_RS19600 at 771.438 kb on + strand at 771.438 kb on + strand at 771.605 kb on + strand, within ABZR87_RS19605 at 771.605 kb on + strand, within ABZR87_RS19605 at 771.701 kb on - strand, within ABZR87_RS19605
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 768,864 - +0.4 768,921 - +1.3 768,986 - +0.1 769,019 + +0.5 769,019 + +2.4 769,019 + +1.7 769,019 + -0.2 769,019 + +0.4 769,019 + -0.3 769,019 + +0.4 769,019 + +0.3 769,019 + -0.9 769,019 + -0.2 769,019 + -1.2 769,019 + +0.3 769,019 + +0.8 769,020 - +0.4 769,020 - +0.3 769,020 - -1.9 769,020 - +0.2 769,020 - -0.2 769,020 - -1.0 769,020 - -1.8 769,020 - +0.4 769,020 - -0.4 769,020 - -0.8 769,020 - +2.1 769,408 + ABZR87_RS19590 0.22 +0.3 769,409 - ABZR87_RS19590 0.22 -0.4 769,409 - ABZR87_RS19590 0.22 +0.2 769,409 - ABZR87_RS19590 0.22 -0.6 769,420 + ABZR87_RS19590 0.26 +0.5 769,420 + ABZR87_RS19590 0.26 +0.1 769,423 - ABZR87_RS19590 0.27 +0.2 769,633 + -1.3 769,633 + -0.1 769,633 + +0.7 769,696 + +0.1 769,697 - -1.4 769,921 + ABZR87_RS19595 0.20 -1.0 769,921 + ABZR87_RS19595 0.20 -1.3 769,921 + ABZR87_RS19595 0.20 -0.9 769,921 + ABZR87_RS19595 0.20 +0.7 769,921 + ABZR87_RS19595 0.20 -0.3 769,921 + ABZR87_RS19595 0.20 -0.5 769,921 + ABZR87_RS19595 0.20 -0.4 769,922 - ABZR87_RS19595 0.20 -0.1 769,922 - ABZR87_RS19595 0.20 -0.1 769,996 + ABZR87_RS19595 0.26 -1.4 769,997 - ABZR87_RS19595 0.26 -0.6 770,090 - ABZR87_RS19595 0.34 -0.4 770,245 + ABZR87_RS19595 0.48 -0.8 770,245 + ABZR87_RS19595 0.48 +0.8 770,246 - ABZR87_RS19595 0.48 -0.9 770,246 - ABZR87_RS19595 0.48 +1.3 770,278 + ABZR87_RS19595 0.50 -1.0 770,279 - ABZR87_RS19595 0.51 +0.7 770,539 + ABZR87_RS19595 0.73 -1.9 770,540 - ABZR87_RS19595 0.73 -1.0 770,540 - ABZR87_RS19595 0.73 -0.4 770,540 - ABZR87_RS19595 0.73 -0.9 770,572 + ABZR87_RS19595 0.76 -1.6 770,611 + ABZR87_RS19595 0.79 +0.1 770,611 + ABZR87_RS19595 0.79 -0.8 770,611 + ABZR87_RS19595 0.79 +0.4 770,612 - ABZR87_RS19595 0.79 -1.1 770,612 - ABZR87_RS19595 0.79 +0.1 770,612 - ABZR87_RS19595 0.79 +1.8 770,620 + ABZR87_RS19595 0.80 +1.8 770,773 + -1.0 770,774 - -0.5 770,795 + -1.4 770,844 - +0.4 770,933 - +0.1 771,294 + ABZR87_RS19600 0.85 +0.5 771,294 + ABZR87_RS19600 0.85 -0.3 771,294 + ABZR87_RS19600 0.85 -0.6 771,295 - ABZR87_RS19600 0.85 +0.5 771,295 - ABZR87_RS19600 0.85 +0.6 771,295 - ABZR87_RS19600 0.85 -0.8 771,438 + +0.5 771,438 + +0.9 771,605 + ABZR87_RS19605 0.19 +0.1 771,605 + ABZR87_RS19605 0.19 -0.5 771,701 - ABZR87_RS19605 0.27 -0.1
Or see this region's nucleotide sequence