Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19470

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19465 and ABZR87_RS19470 are separated by 168 nucleotidesABZR87_RS19470 and ABZR87_RS19475 are separated by 38 nucleotides ABZR87_RS19465: ABZR87_RS19465 - tyrosine-type recombinase/integrase, at 736,576 to 737,556 _RS19465 ABZR87_RS19470: ABZR87_RS19470 - UDP-glucose 4-epimerase GalE, at 737,725 to 738,750 _RS19470 ABZR87_RS19475: ABZR87_RS19475 - PAS domain-containing protein, at 738,789 to 740,216 _RS19475 Position (kb) 737 738 739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 736.843 kb on + strand, within ABZR87_RS19465at 736.843 kb on + strand, within ABZR87_RS19465at 736.844 kb on - strand, within ABZR87_RS19465at 737.192 kb on - strand, within ABZR87_RS19465at 737.192 kb on - strand, within ABZR87_RS19465at 737.326 kb on + strand, within ABZR87_RS19465at 737.413 kb on + strand, within ABZR87_RS19465at 737.462 kb on - strandat 737.512 kb on + strandat 737.512 kb on + strandat 737.513 kb on - strandat 737.513 kb on - strandat 737.554 kb on + strandat 737.554 kb on + strandat 737.554 kb on + strandat 737.554 kb on + strandat 737.555 kb on - strandat 737.555 kb on - strandat 737.555 kb on - strandat 737.615 kb on + strandat 737.616 kb on - strandat 737.616 kb on - strandat 737.631 kb on + strandat 737.632 kb on - strandat 737.660 kb on + strandat 737.660 kb on + strandat 737.660 kb on + strandat 737.660 kb on + strandat 737.660 kb on + strandat 737.660 kb on + strandat 737.661 kb on - strandat 737.693 kb on + strandat 737.693 kb on + strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 738.016 kb on + strand, within ABZR87_RS19470at 738.016 kb on + strand, within ABZR87_RS19470at 738.016 kb on + strand, within ABZR87_RS19470at 738.019 kb on + strand, within ABZR87_RS19470at 738.020 kb on - strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.127 kb on - strand, within ABZR87_RS19470at 738.247 kb on + strand, within ABZR87_RS19470at 738.247 kb on + strand, within ABZR87_RS19470at 738.248 kb on - strand, within ABZR87_RS19470at 738.256 kb on + strand, within ABZR87_RS19470at 738.256 kb on + strand, within ABZR87_RS19470at 738.257 kb on - strand, within ABZR87_RS19470at 738.257 kb on - strand, within ABZR87_RS19470at 738.257 kb on - strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.335 kb on + strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.553 kb on + strand, within ABZR87_RS19470at 738.583 kb on + strand, within ABZR87_RS19470at 738.625 kb on + strand, within ABZR87_RS19470at 738.625 kb on + strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.821 kb on + strandat 738.821 kb on + strandat 738.821 kb on + strandat 738.821 kb on + strandat 738.821 kb on + strandat 738.822 kb on - strandat 739.144 kb on + strand, within ABZR87_RS19475at 739.192 kb on + strand, within ABZR87_RS19475at 739.193 kb on - strand, within ABZR87_RS19475at 739.238 kb on + strand, within ABZR87_RS19475at 739.239 kb on - strand, within ABZR87_RS19475at 739.392 kb on + strand, within ABZR87_RS19475at 739.393 kb on - strand, within ABZR87_RS19475at 739.518 kb on + strand, within ABZR87_RS19475at 739.620 kb on + strand, within ABZR87_RS19475at 739.620 kb on + strand, within ABZR87_RS19475at 739.620 kb on + strand, within ABZR87_RS19475

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB
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736,843 + ABZR87_RS19465 0.27 -1.2
736,843 + ABZR87_RS19465 0.27 +1.8
736,844 - ABZR87_RS19465 0.27 +0.5
737,192 - ABZR87_RS19465 0.63 -0.2
737,192 - ABZR87_RS19465 0.63 +0.5
737,326 + ABZR87_RS19465 0.76 +1.6
737,413 + ABZR87_RS19465 0.85 -0.3
737,462 - -1.0
737,512 + +0.4
737,512 + +0.9
737,513 - +1.1
737,513 - -0.5
737,554 + +0.5
737,554 + +0.6
737,554 + +0.7
737,554 + +0.4
737,555 - -0.5
737,555 - -1.2
737,555 - -0.6
737,615 + +0.8
737,616 - -0.5
737,616 - +1.3
737,631 + -0.2
737,632 - -2.6
737,660 + +0.2
737,660 + +1.5
737,660 + -1.0
737,660 + +0.5
737,660 + +2.2
737,660 + +2.1
737,661 - -1.9
737,693 + +0.5
737,693 + +1.8
737,694 - -2.3
737,694 - -2.1
737,694 - +0.5
737,694 - +0.7
737,694 - -1.1
737,694 - -1.0
737,694 - -0.2
737,906 + ABZR87_RS19470 0.18 +1.1
737,906 + ABZR87_RS19470 0.18 -2.1
737,906 + ABZR87_RS19470 0.18 -0.8
737,906 + ABZR87_RS19470 0.18 -2.6
737,906 + ABZR87_RS19470 0.18 -1.4
737,906 + ABZR87_RS19470 0.18 -0.8
738,016 + ABZR87_RS19470 0.28 +0.5
738,016 + ABZR87_RS19470 0.28 +1.0
738,016 + ABZR87_RS19470 0.28 -2.0
738,019 + ABZR87_RS19470 0.29 -0.1
738,020 - ABZR87_RS19470 0.29 -2.8
738,112 + ABZR87_RS19470 0.38 -0.3
738,112 + ABZR87_RS19470 0.38 -1.4
738,112 + ABZR87_RS19470 0.38 -1.5
738,112 + ABZR87_RS19470 0.38 -1.7
738,112 + ABZR87_RS19470 0.38 -3.3
738,112 + ABZR87_RS19470 0.38 -2.1
738,113 - ABZR87_RS19470 0.38 -0.6
738,113 - ABZR87_RS19470 0.38 -0.3
738,113 - ABZR87_RS19470 0.38 -2.2
738,113 - ABZR87_RS19470 0.38 -2.3
738,113 - ABZR87_RS19470 0.38 +2.1
738,127 - ABZR87_RS19470 0.39 +0.2
738,247 + ABZR87_RS19470 0.51 -0.4
738,247 + ABZR87_RS19470 0.51 -0.5
738,248 - ABZR87_RS19470 0.51 -1.2
738,256 + ABZR87_RS19470 0.52 -3.0
738,256 + ABZR87_RS19470 0.52 -0.7
738,257 - ABZR87_RS19470 0.52 -1.6
738,257 - ABZR87_RS19470 0.52 -1.1
738,257 - ABZR87_RS19470 0.52 -1.8
738,334 + ABZR87_RS19470 0.59 -2.4
738,334 + ABZR87_RS19470 0.59 -1.9
738,334 + ABZR87_RS19470 0.59 -1.5
738,334 + ABZR87_RS19470 0.59 -2.3
738,335 + ABZR87_RS19470 0.59 -1.9
738,335 - ABZR87_RS19470 0.59 -3.8
738,335 - ABZR87_RS19470 0.59 +1.5
738,335 - ABZR87_RS19470 0.59 -2.0
738,335 - ABZR87_RS19470 0.59 -1.7
738,424 + ABZR87_RS19470 0.68 -1.2
738,424 + ABZR87_RS19470 0.68 -1.2
738,424 + ABZR87_RS19470 0.68 -1.5
738,424 + ABZR87_RS19470 0.68 +1.1
738,425 - ABZR87_RS19470 0.68 -1.5
738,425 - ABZR87_RS19470 0.68 -1.8
738,425 - ABZR87_RS19470 0.68 -2.4
738,425 - ABZR87_RS19470 0.68 -1.0
738,553 + ABZR87_RS19470 0.81 -4.1
738,583 + ABZR87_RS19470 0.84 -0.3
738,625 + ABZR87_RS19470 0.88 -1.5
738,625 + ABZR87_RS19470 0.88 -2.4
738,626 - ABZR87_RS19470 0.88 +0.7
738,626 - ABZR87_RS19470 0.88 -2.0
738,626 - ABZR87_RS19470 0.88 -0.6
738,626 - ABZR87_RS19470 0.88 -0.2
738,821 + -0.3
738,821 + -0.7
738,821 + +0.3
738,821 + +0.6
738,821 + -0.6
738,822 - +0.7
739,144 + ABZR87_RS19475 0.25 +1.4
739,192 + ABZR87_RS19475 0.28 +0.6
739,193 - ABZR87_RS19475 0.28 +1.0
739,238 + ABZR87_RS19475 0.31 +0.4
739,239 - ABZR87_RS19475 0.32 +0.1
739,392 + ABZR87_RS19475 0.42 +0.7
739,393 - ABZR87_RS19475 0.42 +0.2
739,518 + ABZR87_RS19475 0.51 +1.1
739,620 + ABZR87_RS19475 0.58 +2.1
739,620 + ABZR87_RS19475 0.58 +1.2
739,620 + ABZR87_RS19475 0.58 +1.2

Or see this region's nucleotide sequence