Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19305 and ABZR87_RS19310 overlap by 19 nucleotides ABZR87_RS19310 and ABZR87_RS19315 overlap by 4 nucleotides ABZR87_RS19315 and ABZR87_RS19320 overlap by 4 nucleotides ABZR87_RS19320 and ABZR87_RS19325 are separated by 4 nucleotides
ABZR87_RS19305: ABZR87_RS19305 - SctK family type III secretion system sorting platform protein, at 691,879 to 692,541
_RS19305
ABZR87_RS19310: ABZR87_RS19310 - type III secretion system stator protein SctL, at 692,523 to 693,128
_RS19310
ABZR87_RS19315: ABZR87_RS19315 - FliI/YscN family ATPase, at 693,125 to 694,483
_RS19315
ABZR87_RS19320: ABZR87_RS19320 - hypothetical protein, at 694,480 to 694,974
_RS19320
ABZR87_RS19325: ABZR87_RS19325 - type III secretion system export apparatus subunit SctT, at 694,979 to 695,779
_RS19325
Position (kb) 693
694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 692.193 kb on + strand, within ABZR87_RS19305 at 692.446 kb on + strand, within ABZR87_RS19305 at 692.543 kb on + strand at 692.598 kb on + strand, within ABZR87_RS19310 at 692.868 kb on + strand, within ABZR87_RS19310 at 692.868 kb on + strand, within ABZR87_RS19310 at 692.868 kb on + strand, within ABZR87_RS19310 at 692.868 kb on + strand, within ABZR87_RS19310 at 692.869 kb on - strand, within ABZR87_RS19310 at 693.222 kb on + strand at 693.223 kb on - strand at 693.223 kb on - strand at 693.336 kb on - strand, within ABZR87_RS19315 at 693.336 kb on - strand, within ABZR87_RS19315 at 693.656 kb on - strand, within ABZR87_RS19315 at 693.894 kb on - strand, within ABZR87_RS19315 at 694.088 kb on + strand, within ABZR87_RS19315 at 694.088 kb on + strand, within ABZR87_RS19315 at 694.225 kb on + strand, within ABZR87_RS19315 at 694.226 kb on - strand, within ABZR87_RS19315 at 694.304 kb on + strand, within ABZR87_RS19315 at 694.697 kb on + strand, within ABZR87_RS19320 at 695.062 kb on + strand, within ABZR87_RS19325 at 695.063 kb on - strand, within ABZR87_RS19325 at 695.441 kb on + strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 692,193 + ABZR87_RS19305 0.47 +1.0 692,446 + ABZR87_RS19305 0.86 +0.4 692,543 + -1.4 692,598 + ABZR87_RS19310 0.12 -3.5 692,868 + ABZR87_RS19310 0.57 +0.1 692,868 + ABZR87_RS19310 0.57 +1.1 692,868 + ABZR87_RS19310 0.57 +0.1 692,868 + ABZR87_RS19310 0.57 +0.7 692,869 - ABZR87_RS19310 0.57 -0.7 693,222 + +1.8 693,223 - -0.3 693,223 - -0.5 693,336 - ABZR87_RS19315 0.16 -1.3 693,336 - ABZR87_RS19315 0.16 +0.7 693,656 - ABZR87_RS19315 0.39 -1.7 693,894 - ABZR87_RS19315 0.57 -0.0 694,088 + ABZR87_RS19315 0.71 +1.2 694,088 + ABZR87_RS19315 0.71 -0.5 694,225 + ABZR87_RS19315 0.81 -0.4 694,226 - ABZR87_RS19315 0.81 -0.0 694,304 + ABZR87_RS19315 0.87 -0.2 694,697 + ABZR87_RS19320 0.44 -0.4 695,062 + ABZR87_RS19325 0.10 +0.2 695,063 - ABZR87_RS19325 0.10 -1.1 695,441 + ABZR87_RS19325 0.58 +0.2 695,442 - ABZR87_RS19325 0.58 +0.5 695,442 - ABZR87_RS19325 0.58 -0.2 695,442 - ABZR87_RS19325 0.58 -0.6
Or see this region's nucleotide sequence