Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18985 and ABZR87_RS18990 are separated by 224 nucleotides ABZR87_RS18990 and ABZR87_RS18995 are separated by 116 nucleotides ABZR87_RS18995 and ABZR87_RS19000 are separated by 14 nucleotides
ABZR87_RS18985: ABZR87_RS18985 - GGDEF and EAL domain-containing protein, at 616,882 to 618,324
_RS18985
ABZR87_RS18990: ABZR87_RS18990 - flagellar brake protein, at 618,549 to 619,454
_RS18990
ABZR87_RS18995: ABZR87_RS18995 - GtrA family protein, at 619,571 to 620,083
_RS18995
ABZR87_RS19000: ABZR87_RS19000 - hypothetical protein, at 620,098 to 620,580
_RS19000
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 617.717 kb on + strand, within ABZR87_RS18985 at 617.717 kb on + strand, within ABZR87_RS18985 at 617.718 kb on - strand, within ABZR87_RS18985 at 617.801 kb on + strand, within ABZR87_RS18985 at 617.802 kb on - strand, within ABZR87_RS18985 at 617.802 kb on - strand, within ABZR87_RS18985 at 617.802 kb on - strand, within ABZR87_RS18985 at 617.802 kb on - strand, within ABZR87_RS18985 at 617.802 kb on - strand, within ABZR87_RS18985 at 617.841 kb on - strand, within ABZR87_RS18985 at 617.907 kb on + strand, within ABZR87_RS18985 at 617.908 kb on - strand, within ABZR87_RS18985 at 617.908 kb on - strand, within ABZR87_RS18985 at 617.937 kb on - strand, within ABZR87_RS18985 at 618.324 kb on + strand at 618.324 kb on + strand at 618.352 kb on + strand at 618.352 kb on + strand at 618.352 kb on + strand at 618.353 kb on - strand at 618.390 kb on + strand at 618.390 kb on + strand at 618.391 kb on - strand at 618.392 kb on + strand at 618.392 kb on + strand at 618.392 kb on + strand at 618.424 kb on - strand at 618.531 kb on - strand at 618.550 kb on + strand at 618.550 kb on + strand at 618.551 kb on - strand at 618.586 kb on + strand at 618.586 kb on + strand at 618.586 kb on + strand at 618.586 kb on + strand at 618.587 kb on - strand at 618.587 kb on - strand at 618.587 kb on - strand at 618.587 kb on - strand at 618.587 kb on - strand at 618.587 kb on - strand at 618.587 kb on - strand at 618.587 kb on - strand at 618.587 kb on - strand at 618.646 kb on + strand, within ABZR87_RS18990 at 618.646 kb on + strand, within ABZR87_RS18990 at 618.646 kb on + strand, within ABZR87_RS18990 at 618.646 kb on + strand, within ABZR87_RS18990 at 618.647 kb on - strand, within ABZR87_RS18990 at 618.647 kb on - strand, within ABZR87_RS18990 at 618.653 kb on - strand, within ABZR87_RS18990 at 618.653 kb on - strand, within ABZR87_RS18990 at 618.718 kb on + strand, within ABZR87_RS18990 at 618.718 kb on + strand, within ABZR87_RS18990 at 618.718 kb on + strand, within ABZR87_RS18990 at 618.718 kb on + strand, within ABZR87_RS18990 at 618.718 kb on + strand, within ABZR87_RS18990 at 618.719 kb on - strand, within ABZR87_RS18990 at 618.719 kb on - strand, within ABZR87_RS18990 at 618.719 kb on - strand, within ABZR87_RS18990 at 618.719 kb on - strand, within ABZR87_RS18990 at 618.940 kb on + strand, within ABZR87_RS18990 at 618.940 kb on + strand, within ABZR87_RS18990 at 618.940 kb on + strand, within ABZR87_RS18990 at 618.941 kb on - strand, within ABZR87_RS18990 at 618.941 kb on - strand, within ABZR87_RS18990 at 618.941 kb on - strand, within ABZR87_RS18990 at 618.941 kb on - strand, within ABZR87_RS18990 at 618.960 kb on + strand, within ABZR87_RS18990 at 618.961 kb on - strand, within ABZR87_RS18990 at 619.099 kb on + strand, within ABZR87_RS18990 at 619.099 kb on + strand, within ABZR87_RS18990 at 619.202 kb on + strand, within ABZR87_RS18990 at 619.202 kb on + strand, within ABZR87_RS18990 at 619.202 kb on + strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.259 kb on + strand, within ABZR87_RS18990 at 619.260 kb on - strand, within ABZR87_RS18990 at 619.495 kb on + strand at 619.495 kb on + strand at 619.495 kb on + strand at 619.520 kb on + strand at 619.530 kb on + strand at 619.530 kb on + strand at 619.531 kb on - strand at 619.667 kb on + strand, within ABZR87_RS18995 at 619.667 kb on + strand, within ABZR87_RS18995 at 619.667 kb on + strand, within ABZR87_RS18995 at 619.667 kb on + strand, within ABZR87_RS18995 at 619.668 kb on - strand, within ABZR87_RS18995 at 619.668 kb on - strand, within ABZR87_RS18995 at 619.668 kb on - strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.670 kb on - strand, within ABZR87_RS18995 at 619.670 kb on - strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.704 kb on - strand, within ABZR87_RS18995 at 619.704 kb on - strand, within ABZR87_RS18995 at 619.704 kb on - strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.834 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.928 kb on + strand, within ABZR87_RS18995 at 619.928 kb on + strand, within ABZR87_RS18995 at 619.929 kb on - strand, within ABZR87_RS18995 at 619.929 kb on - strand, within ABZR87_RS18995 at 620.099 kb on + strand at 620.100 kb on - strand at 620.100 kb on - strand at 620.218 kb on + strand, within ABZR87_RS19000 at 620.218 kb on + strand, within ABZR87_RS19000 at 620.218 kb on + strand, within ABZR87_RS19000 at 620.218 kb on + strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.289 kb on + strand, within ABZR87_RS19000 at 620.289 kb on + strand, within ABZR87_RS19000 at 620.402 kb on + strand, within ABZR87_RS19000 at 620.402 kb on + strand, within ABZR87_RS19000 at 620.403 kb on - strand, within ABZR87_RS19000
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 617,717 + ABZR87_RS18985 0.58 -1.6 617,717 + ABZR87_RS18985 0.58 -0.4 617,718 - ABZR87_RS18985 0.58 -0.3 617,801 + ABZR87_RS18985 0.64 -1.2 617,802 - ABZR87_RS18985 0.64 +0.2 617,802 - ABZR87_RS18985 0.64 -1.3 617,802 - ABZR87_RS18985 0.64 -0.3 617,802 - ABZR87_RS18985 0.64 +0.1 617,802 - ABZR87_RS18985 0.64 +0.7 617,841 - ABZR87_RS18985 0.66 -0.8 617,907 + ABZR87_RS18985 0.71 -1.4 617,908 - ABZR87_RS18985 0.71 +1.0 617,908 - ABZR87_RS18985 0.71 -0.0 617,937 - ABZR87_RS18985 0.73 -0.4 618,324 + +0.3 618,324 + +0.1 618,352 + -0.8 618,352 + -0.6 618,352 + -0.5 618,353 - +0.1 618,390 + -1.0 618,390 + -0.1 618,391 - +1.7 618,392 + +0.1 618,392 + +0.7 618,392 + -0.3 618,424 - +1.2 618,531 - +1.1 618,550 + -0.7 618,550 + +0.4 618,551 - +1.1 618,586 + +0.0 618,586 + +0.8 618,586 + -0.6 618,586 + -0.6 618,587 - +2.1 618,587 - +1.8 618,587 - +1.8 618,587 - +2.8 618,587 - +1.4 618,587 - +1.6 618,587 - +2.0 618,587 - +1.7 618,587 - +2.0 618,646 + ABZR87_RS18990 0.11 -3.4 618,646 + ABZR87_RS18990 0.11 +0.1 618,646 + ABZR87_RS18990 0.11 +0.7 618,646 + ABZR87_RS18990 0.11 -2.0 618,647 - ABZR87_RS18990 0.11 +2.1 618,647 - ABZR87_RS18990 0.11 +2.2 618,653 - ABZR87_RS18990 0.11 +1.2 618,653 - ABZR87_RS18990 0.11 +1.5 618,718 + ABZR87_RS18990 0.19 +0.7 618,718 + ABZR87_RS18990 0.19 -0.8 618,718 + ABZR87_RS18990 0.19 +0.2 618,718 + ABZR87_RS18990 0.19 -0.0 618,718 + ABZR87_RS18990 0.19 -0.3 618,719 - ABZR87_RS18990 0.19 +0.7 618,719 - ABZR87_RS18990 0.19 +2.3 618,719 - ABZR87_RS18990 0.19 +0.6 618,719 - ABZR87_RS18990 0.19 +1.4 618,940 + ABZR87_RS18990 0.43 +0.1 618,940 + ABZR87_RS18990 0.43 -0.6 618,940 + ABZR87_RS18990 0.43 -1.4 618,941 - ABZR87_RS18990 0.43 +0.7 618,941 - ABZR87_RS18990 0.43 +1.6 618,941 - ABZR87_RS18990 0.43 +0.9 618,941 - ABZR87_RS18990 0.43 +0.9 618,960 + ABZR87_RS18990 0.45 -0.2 618,961 - ABZR87_RS18990 0.45 +1.0 619,099 + ABZR87_RS18990 0.61 -0.2 619,099 + ABZR87_RS18990 0.61 +0.1 619,202 + ABZR87_RS18990 0.72 -0.1 619,202 + ABZR87_RS18990 0.72 +0.5 619,202 + ABZR87_RS18990 0.72 -0.3 619,203 - ABZR87_RS18990 0.72 -1.0 619,203 - ABZR87_RS18990 0.72 +0.1 619,203 - ABZR87_RS18990 0.72 +1.3 619,203 - ABZR87_RS18990 0.72 +0.7 619,203 - ABZR87_RS18990 0.72 +0.9 619,259 + ABZR87_RS18990 0.78 -0.0 619,260 - ABZR87_RS18990 0.78 -0.0 619,495 + +0.3 619,495 + -0.7 619,495 + -1.2 619,520 + -0.7 619,530 + +0.3 619,530 + +1.9 619,531 - -1.0 619,667 + ABZR87_RS18995 0.19 +0.2 619,667 + ABZR87_RS18995 0.19 +0.5 619,667 + ABZR87_RS18995 0.19 +0.9 619,667 + ABZR87_RS18995 0.19 -1.0 619,668 - ABZR87_RS18995 0.19 +0.2 619,668 - ABZR87_RS18995 0.19 -3.2 619,668 - ABZR87_RS18995 0.19 +0.1 619,669 + ABZR87_RS18995 0.19 +0.8 619,669 + ABZR87_RS18995 0.19 -0.6 619,669 + ABZR87_RS18995 0.19 -0.5 619,669 + ABZR87_RS18995 0.19 -0.7 619,669 + ABZR87_RS18995 0.19 -2.3 619,670 - ABZR87_RS18995 0.19 -0.0 619,670 - ABZR87_RS18995 0.19 -0.9 619,703 + ABZR87_RS18995 0.26 +0.2 619,703 + ABZR87_RS18995 0.26 +1.2 619,703 + ABZR87_RS18995 0.26 -0.2 619,703 + ABZR87_RS18995 0.26 -0.1 619,703 + ABZR87_RS18995 0.26 -0.9 619,703 + ABZR87_RS18995 0.26 -0.4 619,703 + ABZR87_RS18995 0.26 -0.5 619,703 + ABZR87_RS18995 0.26 -0.8 619,703 + ABZR87_RS18995 0.26 -0.0 619,703 + ABZR87_RS18995 0.26 -2.0 619,703 + ABZR87_RS18995 0.26 +0.0 619,704 - ABZR87_RS18995 0.26 -0.2 619,704 - ABZR87_RS18995 0.26 -1.7 619,704 - ABZR87_RS18995 0.26 +0.4 619,790 + ABZR87_RS18995 0.43 -0.1 619,790 + ABZR87_RS18995 0.43 -1.8 619,790 + ABZR87_RS18995 0.43 -0.2 619,790 + ABZR87_RS18995 0.43 +0.0 619,791 - ABZR87_RS18995 0.43 -0.0 619,791 - ABZR87_RS18995 0.43 -1.7 619,791 - ABZR87_RS18995 0.43 +0.8 619,791 - ABZR87_RS18995 0.43 +0.4 619,791 - ABZR87_RS18995 0.43 +0.8 619,791 - ABZR87_RS18995 0.43 +0.5 619,791 - ABZR87_RS18995 0.43 -0.4 619,834 + ABZR87_RS18995 0.51 -0.7 619,925 + ABZR87_RS18995 0.69 -1.1 619,925 + ABZR87_RS18995 0.69 -0.8 619,925 + ABZR87_RS18995 0.69 +0.6 619,925 + ABZR87_RS18995 0.69 +0.6 619,926 - ABZR87_RS18995 0.69 +0.4 619,926 - ABZR87_RS18995 0.69 -0.5 619,926 - ABZR87_RS18995 0.69 -0.1 619,926 - ABZR87_RS18995 0.69 -1.6 619,926 - ABZR87_RS18995 0.69 -1.3 619,928 + ABZR87_RS18995 0.70 -1.2 619,928 + ABZR87_RS18995 0.70 -0.2 619,929 - ABZR87_RS18995 0.70 +0.2 619,929 - ABZR87_RS18995 0.70 +0.2 620,099 + -0.9 620,100 - -1.0 620,100 - +0.4 620,218 + ABZR87_RS19000 0.25 -0.5 620,218 + ABZR87_RS19000 0.25 -0.6 620,218 + ABZR87_RS19000 0.25 -1.1 620,218 + ABZR87_RS19000 0.25 +0.6 620,219 - ABZR87_RS19000 0.25 -0.2 620,219 - ABZR87_RS19000 0.25 +1.7 620,219 - ABZR87_RS19000 0.25 -0.8 620,219 - ABZR87_RS19000 0.25 +0.0 620,289 + ABZR87_RS19000 0.40 -1.0 620,289 + ABZR87_RS19000 0.40 -0.6 620,402 + ABZR87_RS19000 0.63 -0.2 620,402 + ABZR87_RS19000 0.63 -0.6 620,403 - ABZR87_RS19000 0.63 +0.0
Or see this region's nucleotide sequence